Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48505 * 109.47057 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.47278 * 29.99677 * 3 2 1 6 6 H 1.48495 * 109.47117 * 150.00015 * 3 2 1 7 7 C 1.38951 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99617 * 0.02562 * 7 2 1 9 9 N 1.37089 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00143 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99861 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00156 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47211 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00236 * 180.02562 * 13 12 10 15 15 C 1.53777 * 113.61322 * 155.00420 * 14 13 12 16 16 C 1.53778 * 87.08322 * 89.11422 * 15 14 13 17 17 C 1.53007 * 113.61471 * 139.98043 * 16 15 14 18 18 N 1.46501 * 109.47049 * 175.00030 * 17 16 15 19 19 C 1.34776 * 119.99684 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00118 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99767 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.46924 * 180.02562 * 21 19 18 23 23 H 1.08997 * 110.67853 * 52.03260 * 22 21 19 24 24 C 1.54998 * 110.61705 * 175.00340 * 22 21 19 25 25 C 1.54817 * 102.12466 * 155.53959 * 24 22 21 26 26 C 1.54100 * 104.18606 * 339.09929 * 25 24 22 27 27 O 1.43746 * 107.29659 * 357.97343 * 26 25 24 28 28 C 1.53776 * 87.08098 * 25.43027 * 16 15 14 29 29 H 0.97001 * 120.00363 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00529 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47185 * 60.00283 * 12 10 9 32 32 H 1.09001 * 109.47476 * 300.00156 * 12 10 9 33 33 H 1.00906 * 110.99859 * 56.04459 * 13 12 10 34 34 H 1.08993 * 112.90320 * 23.74754 * 14 13 12 35 35 H 1.08997 * 113.61716 * 334.56270 * 15 14 13 36 36 H 1.09003 * 113.69054 * 203.67290 * 15 14 13 37 37 H 1.08996 * 113.61390 * 270.79574 * 16 15 14 38 38 H 1.08995 * 109.47291 * 54.99807 * 17 16 15 39 39 H 1.09000 * 109.46624 * 294.99915 * 17 16 15 40 40 H 0.96992 * 120.00078 * 0.02562 * 18 17 16 41 41 H 1.08995 * 109.47021 * 60.00398 * 21 19 18 42 42 H 1.09002 * 109.46991 * 300.00375 * 21 19 18 43 43 H 1.09002 * 110.90913 * 37.32174 * 24 22 21 44 44 H 1.08997 * 110.90321 * 273.75291 * 24 22 21 45 45 H 1.08991 * 110.48506 * 97.77523 * 25 24 22 46 46 H 1.08995 * 110.48134 * 220.29142 * 25 24 22 47 47 H 1.09002 * 109.87699 * 117.39650 * 26 25 24 48 48 H 1.08999 * 109.87889 * 238.54603 * 26 25 24 49 49 H 1.09000 * 113.61580 * 89.11626 * 28 16 15 50 50 H 1.09004 * 113.61679 * 220.01720 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3704 0.0000 13 7 6.0504 -3.7554 0.0006 14 6 7.5189 -3.7946 0.0013 15 6 8.1003 -5.0874 0.5973 16 6 8.0321 -5.6787 -0.8206 17 6 9.2432 -6.5401 -1.1845 18 7 9.0306 -7.1510 -2.4990 19 6 9.9729 -7.9565 -3.0279 20 8 10.9965 -8.1759 -2.4156 21 6 9.7541 -8.5854 -4.3798 22 6 10.9652 -9.4466 -4.7437 23 1 11.1961 -10.1454 -3.9396 24 6 10.7159 -10.2058 -6.0718 25 6 12.1572 -10.4600 -6.5766 26 6 13.0072 -9.4085 -5.8373 27 8 12.1099 -8.6167 -5.0409 28 6 8.1239 -4.2350 -1.3422 29 1 -0.4851 0.8400 -0.0004 30 1 3.8648 -0.3632 -0.0004 31 1 5.9240 -1.8566 0.8900 32 1 5.9241 -1.8566 -0.8899 33 1 5.6749 -4.2720 -0.7805 34 1 7.9673 -2.8871 0.4055 35 1 7.4353 -5.5784 1.3076 36 1 9.1166 -4.9768 0.9757 37 1 7.0833 -6.1660 -1.0452 38 1 9.3705 -7.3225 -0.4365 39 1 10.1367 -5.9166 -1.2138 40 1 8.2122 -6.9753 -2.9888 41 1 9.6261 -7.8032 -5.1280 42 1 8.8608 -9.2093 -4.3500 43 1 10.1607 -9.5859 -6.7759 44 1 10.1958 -11.1463 -5.8904 45 1 12.4816 -11.4666 -6.3133 46 1 12.2155 -10.3111 -7.6548 47 1 13.7337 -9.9050 -5.1940 48 1 13.5211 -8.7734 -6.5588 49 1 9.1465 -3.8900 -1.4945 50 1 7.4778 -4.0378 -2.1977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692333922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -99.379465 kcal Electronic energy + Delta-G solvation = -28298.574523 eV Core-core repulsion = 24133.188415 eV Total energy + Delta-G solvation = -4165.386108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43243 -39.76823 -38.96541 -38.21062 -35.06173 -34.07769 -33.19475 -32.73593 -32.10046 -31.65996 -28.70169 -26.99579 -26.03752 -25.77337 -23.76959 -22.74991 -22.15465 -21.62181 -20.63120 -19.43478 -19.07982 -18.37302 -17.55592 -16.85379 -16.67062 -16.06885 -15.98878 -15.76435 -15.52167 -15.38607 -14.87381 -14.83087 -14.56179 -14.14905 -13.85266 -13.68552 -13.59111 -13.07745 -12.86870 -12.83890 -12.74904 -12.50429 -12.35965 -12.19730 -12.16370 -11.93106 -11.72155 -11.67471 -11.59182 -11.18578 -11.14846 -10.97347 -10.61265 -10.57942 -10.38238 -9.99461 -9.99036 -9.93470 -9.59172 -9.26395 -8.60413 -8.21518 -8.14395 -6.32817 -3.84345 2.44798 2.91170 3.01567 3.05255 3.13917 3.44049 3.71993 3.99119 4.07019 4.08939 4.21008 4.41230 4.41549 4.46598 4.54672 4.61308 4.64670 4.74913 4.77400 4.95842 4.97531 5.03448 5.09484 5.18160 5.20547 5.26362 5.33215 5.39004 5.41189 5.48726 5.54305 5.56411 5.61644 5.65201 5.67634 5.69137 5.77189 5.91119 6.01035 6.05925 6.14486 6.29201 6.55489 7.12987 7.25819 7.55045 7.57014 8.01856 8.12635 8.57882 8.93132 9.40633 9.80646 10.80260 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.001500 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.847019 B =18658.407065 C =19111.790644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.049 3.951 13 N -0.648 5.648 14 C 0.067 3.933 15 C -0.121 4.121 16 C -0.123 4.123 17 C 0.131 3.869 18 N -0.731 5.731 19 C 0.512 3.488 20 O -0.533 6.533 21 C -0.138 4.138 22 C 0.093 3.907 23 H 0.079 0.921 24 C -0.153 4.153 25 C -0.156 4.156 26 C 0.046 3.954 27 O -0.364 6.364 28 C -0.166 4.166 29 H 0.273 0.727 30 H 0.371 0.629 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.352 0.648 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.401 0.599 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.811 -15.879 -11.487 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.084 4.084 13 N -0.280 5.280 14 C -0.044 4.044 15 C -0.160 4.160 16 C -0.141 4.141 17 C 0.007 3.993 18 N -0.383 5.383 19 C 0.298 3.702 20 O -0.409 6.409 21 C -0.178 4.178 22 C 0.035 3.965 23 H 0.097 0.903 24 C -0.190 4.190 25 C -0.194 4.194 26 C -0.031 4.031 27 O -0.283 6.283 28 C -0.205 4.205 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.172 0.828 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.103 0.897 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.894 -16.472 -10.276 31.569 hybrid contribution 0.315 1.601 -1.274 2.070 sum 25.209 -14.871 -11.550 31.465 Atomic orbital electron populations 1.69618 1.05653 1.27517 1.49296 1.25036 0.95487 0.97973 0.97608 0.86671 0.79830 0.84041 0.78848 1.19672 1.20145 1.19458 1.19433 0.79255 0.96641 1.48138 0.86286 1.42206 1.07537 1.06174 1.67021 1.19720 0.88210 0.84566 0.84023 1.90564 1.69470 1.30943 1.53802 1.21749 0.94927 0.90408 1.01333 1.59916 1.04527 1.12556 1.50995 1.22581 0.88282 0.98219 0.95322 1.23026 1.01067 0.96407 0.95530 1.22808 0.98259 0.94740 0.98342 1.21393 0.97772 0.96259 0.83828 1.46055 1.21680 1.49571 1.20999 1.20529 0.83257 0.78888 0.87537 1.90727 1.26976 1.60876 1.62324 1.21749 0.99146 1.01189 0.95688 1.22857 0.85777 0.91537 0.96354 0.90336 1.23207 0.97307 1.01305 0.97226 1.22929 0.95129 1.00048 1.01300 1.23125 0.92950 0.93252 0.93806 1.88982 1.31272 1.36783 1.71308 1.23791 1.02035 0.96212 0.98465 0.91598 0.79673 0.89384 0.93661 0.82772 0.89834 0.89990 0.89748 0.88300 0.91471 0.91498 0.76496 0.87904 0.87386 0.90199 0.89949 0.90647 0.90422 0.92416 0.89975 0.89684 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.60 10.16 -14.94 -0.15 -8.75 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.89 5.09 -10.97 -0.06 -13.94 16 10 C 0.45 10.02 7.82 -10.99 -0.09 9.93 16 11 O -0.57 -14.97 15.78 5.54 0.09 -14.89 16 12 C 0.05 0.78 6.01 -4.98 -0.03 0.75 16 13 N -0.65 -9.48 6.19 -107.14 -0.66 -10.15 16 14 C 0.07 0.73 4.28 -66.90 -0.29 0.45 16 15 C -0.12 -1.17 7.44 -25.92 -0.19 -1.37 16 16 C -0.12 -1.07 3.52 -89.81 -0.32 -1.39 16 17 C 0.13 1.19 5.51 -4.04 -0.02 1.17 16 18 N -0.73 -6.04 5.56 -60.29 -0.33 -6.38 16 19 C 0.51 5.17 7.77 -10.98 -0.09 5.08 16 20 O -0.53 -7.68 15.66 1.89 0.03 -7.65 16 21 C -0.14 -0.92 5.46 -27.88 -0.15 -1.07 16 22 C 0.09 0.73 2.77 -25.68 -0.07 0.66 16 23 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 24 C -0.15 -0.78 6.58 -24.72 -0.16 -0.94 16 25 C -0.16 -0.78 7.01 -25.20 -0.18 -0.96 16 26 C 0.05 0.33 7.70 37.73 0.29 0.62 16 27 O -0.36 -3.83 10.90 -38.90 -0.42 -4.26 16 28 C -0.17 -1.49 7.15 -25.92 -0.19 -1.68 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 31 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.35 5.29 7.82 -39.29 -0.31 4.98 16 34 H 0.08 0.86 7.87 -51.93 -0.41 0.46 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 40 H 0.40 2.39 8.47 -40.82 -0.35 2.04 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.36 8.06 -51.93 -0.42 -0.06 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 50 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -35.88 407.40 -9.29 -45.17 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.41 Total: 12.74 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.72 Total: 3.54 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.28 Total: -55.27 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.31 Total: -26.79 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.88 -9.29 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692333922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.206 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds