Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48505 * 109.47057 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.47278 * 29.99677 * 3 2 1 6 6 H 1.48495 * 109.47117 * 150.00015 * 3 2 1 7 7 C 1.38951 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99617 * 0.02562 * 7 2 1 9 9 N 1.37089 * 120.00061 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00143 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99861 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00156 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47211 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00236 * 180.02562 * 13 12 10 15 15 C 1.53777 * 113.61322 * 155.00420 * 14 13 12 16 16 C 1.53778 * 87.08322 * 89.11422 * 15 14 13 17 17 C 1.53007 * 113.61471 * 139.98043 * 16 15 14 18 18 N 1.46501 * 109.47049 * 175.00030 * 17 16 15 19 19 C 1.34776 * 119.99684 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00118 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99767 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.46924 * 180.02562 * 21 19 18 23 23 H 1.08997 * 110.67853 * 52.03260 * 22 21 19 24 24 C 1.54998 * 110.61705 * 175.00340 * 22 21 19 25 25 C 1.54817 * 102.12466 * 155.53959 * 24 22 21 26 26 C 1.54100 * 104.18606 * 339.09929 * 25 24 22 27 27 O 1.43746 * 107.29659 * 357.97343 * 26 25 24 28 28 C 1.53776 * 87.08098 * 25.43027 * 16 15 14 29 29 H 0.97001 * 120.00363 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00529 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47185 * 60.00283 * 12 10 9 32 32 H 1.09001 * 109.47476 * 300.00156 * 12 10 9 33 33 H 1.00906 * 110.99859 * 56.04459 * 13 12 10 34 34 H 1.08993 * 112.90320 * 23.74754 * 14 13 12 35 35 H 1.08997 * 113.61716 * 334.56270 * 15 14 13 36 36 H 1.09003 * 113.69054 * 203.67290 * 15 14 13 37 37 H 1.08996 * 113.61390 * 270.79574 * 16 15 14 38 38 H 1.08995 * 109.47291 * 54.99807 * 17 16 15 39 39 H 1.09000 * 109.46624 * 294.99915 * 17 16 15 40 40 H 0.96992 * 120.00078 * 0.02562 * 18 17 16 41 41 H 1.08995 * 109.47021 * 60.00398 * 21 19 18 42 42 H 1.09002 * 109.46991 * 300.00375 * 21 19 18 43 43 H 1.09002 * 110.90913 * 37.32174 * 24 22 21 44 44 H 1.08997 * 110.90321 * 273.75291 * 24 22 21 45 45 H 1.08991 * 110.48506 * 97.77523 * 25 24 22 46 46 H 1.08995 * 110.48134 * 220.29142 * 25 24 22 47 47 H 1.09002 * 109.87699 * 117.39650 * 26 25 24 48 48 H 1.08999 * 109.87889 * 238.54603 * 26 25 24 49 49 H 1.09000 * 113.61580 * 89.11626 * 28 16 15 50 50 H 1.09004 * 113.61679 * 220.01720 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3704 0.0000 13 7 6.0504 -3.7554 0.0006 14 6 7.5189 -3.7946 0.0013 15 6 8.1003 -5.0874 0.5973 16 6 8.0321 -5.6787 -0.8206 17 6 9.2432 -6.5401 -1.1845 18 7 9.0306 -7.1510 -2.4990 19 6 9.9729 -7.9565 -3.0279 20 8 10.9965 -8.1759 -2.4156 21 6 9.7541 -8.5854 -4.3798 22 6 10.9652 -9.4466 -4.7437 23 1 11.1961 -10.1454 -3.9396 24 6 10.7159 -10.2058 -6.0718 25 6 12.1572 -10.4600 -6.5766 26 6 13.0072 -9.4085 -5.8373 27 8 12.1099 -8.6167 -5.0409 28 6 8.1239 -4.2350 -1.3422 29 1 -0.4851 0.8400 -0.0004 30 1 3.8648 -0.3632 -0.0004 31 1 5.9240 -1.8566 0.8900 32 1 5.9241 -1.8566 -0.8899 33 1 5.6749 -4.2720 -0.7805 34 1 7.9673 -2.8871 0.4055 35 1 7.4353 -5.5784 1.3076 36 1 9.1166 -4.9768 0.9757 37 1 7.0833 -6.1660 -1.0452 38 1 9.3705 -7.3225 -0.4365 39 1 10.1367 -5.9166 -1.2138 40 1 8.2122 -6.9753 -2.9888 41 1 9.6261 -7.8032 -5.1280 42 1 8.8608 -9.2093 -4.3500 43 1 10.1607 -9.5859 -6.7759 44 1 10.1958 -11.1463 -5.8904 45 1 12.4816 -11.4666 -6.3133 46 1 12.2155 -10.3111 -7.6548 47 1 13.7337 -9.9050 -5.1940 48 1 13.5211 -8.7734 -6.5588 49 1 9.1465 -3.8900 -1.4945 50 1 7.4778 -4.0378 -2.1977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692333922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -128.553587 kcal Electronic energy + Delta-G solvation = -28299.839608 eV Core-core repulsion = 24133.188415 eV Total energy + Delta-G solvation = -4166.651193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17256 -40.63339 -40.03113 -39.55157 -36.20025 -35.77748 -34.32841 -33.70943 -33.33226 -32.61579 -29.58548 -28.15767 -27.00970 -26.52656 -25.41391 -23.48005 -22.79805 -22.11400 -21.36014 -21.28660 -20.30039 -19.89448 -18.22630 -17.67855 -17.48544 -17.38352 -16.94921 -16.63064 -16.48235 -16.38244 -16.16925 -15.87105 -15.62470 -15.16528 -14.93143 -14.81416 -14.56783 -14.29912 -14.17069 -14.10753 -13.59207 -13.39595 -13.27600 -13.23868 -13.04352 -12.93133 -12.62390 -12.61802 -12.40872 -12.19120 -12.12326 -11.98018 -11.76813 -11.53474 -11.50781 -11.37605 -11.19573 -10.74980 -10.60719 -10.40662 -10.24313 -10.04180 -9.26315 -8.40704 -6.01663 1.31486 1.36199 1.45537 1.69208 1.96476 2.23745 2.24010 2.71314 2.93178 3.16026 3.38004 3.62242 3.63269 3.65794 3.78873 3.84423 3.96030 4.03814 4.05623 4.16623 4.17931 4.27470 4.34829 4.47750 4.50402 4.53505 4.59490 4.66092 4.70473 4.75400 4.84809 4.87075 4.89371 4.93721 4.95163 4.96410 5.11215 5.21064 5.23924 5.26315 5.35830 5.53398 5.56017 5.93394 6.01066 6.14467 6.44037 6.58907 6.60581 6.88750 7.30307 7.40556 7.97044 8.76884 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.001500 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.847019 B =18658.407065 C =19111.790644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.448 3.552 11 O -0.615 6.615 12 C 0.063 3.937 13 N -0.667 5.667 14 C 0.063 3.937 15 C -0.120 4.120 16 C -0.112 4.112 17 C 0.136 3.864 18 N -0.721 5.721 19 C 0.505 3.495 20 O -0.584 6.584 21 C -0.131 4.131 22 C 0.083 3.917 23 H 0.058 0.942 24 C -0.145 4.145 25 C -0.153 4.153 26 C 0.036 3.964 27 O -0.399 6.399 28 C -0.153 4.153 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.346 0.654 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.414 0.586 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.093 -14.371 -12.751 33.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.500 6.500 12 C -0.069 4.069 13 N -0.299 5.299 14 C -0.047 4.047 15 C -0.159 4.159 16 C -0.131 4.131 17 C 0.012 3.988 18 N -0.373 5.373 19 C 0.293 3.707 20 O -0.463 6.463 21 C -0.171 4.171 22 C 0.026 3.974 23 H 0.076 0.924 24 C -0.182 4.182 25 C -0.190 4.190 26 C -0.041 4.041 27 O -0.319 6.319 28 C -0.192 4.192 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.251 0.749 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.115 0.885 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 27.183 -14.967 -11.550 33.111 hybrid contribution -0.425 0.987 -0.845 1.367 sum 26.758 -13.980 -12.395 32.636 Atomic orbital electron populations 1.69802 1.08164 1.29244 1.50275 1.26108 0.96445 1.02694 0.96025 0.85368 0.79507 0.76721 0.79944 1.18081 1.20136 1.15441 1.19014 0.81568 0.94928 1.50415 0.92680 1.42033 1.05787 1.07656 1.67754 1.21022 0.91057 0.83276 0.81065 1.90543 1.71452 1.32798 1.55175 1.21667 0.89309 0.91952 1.03972 1.59906 1.06962 1.11788 1.51235 1.22649 0.86010 0.99269 0.96815 1.23043 1.01470 0.95829 0.95546 1.22686 0.97741 0.94786 0.97865 1.21270 0.97617 0.95852 0.84030 1.46007 1.21884 1.48759 1.20678 1.21187 0.82552 0.78488 0.88442 1.90704 1.29063 1.62682 1.63895 1.21827 0.99838 1.01769 0.93651 1.22985 0.85592 0.91549 0.97304 0.92370 1.23197 0.97590 1.01805 0.95615 1.22938 0.94622 0.99642 1.01811 1.23296 0.93032 0.93892 0.93862 1.88942 1.32575 1.38355 1.72015 1.23699 1.02475 0.95567 0.97427 0.91157 0.77448 0.86955 0.90319 0.83393 0.88429 0.91673 0.88138 0.88731 0.92621 0.92157 0.74938 0.86408 0.84257 0.89103 0.88311 0.89859 0.88994 0.93055 0.89250 0.88456 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.96 21.66 0.30 -55.67 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 3 Si 0.96 38.22 27.74 68.60 1.90 40.12 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 7 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 8 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.37 5.09 -306.99 -1.56 -28.93 16 10 C 0.45 19.74 7.82 87.66 0.69 20.43 16 11 O -0.62 -33.55 15.78 -3.08 -0.05 -33.60 16 12 C 0.06 1.83 6.01 85.56 0.51 2.35 16 13 N -0.67 -18.24 6.19 -492.87 -3.05 -21.29 16 14 C 0.06 1.19 4.28 45.44 0.19 1.38 16 15 C -0.12 -2.11 7.44 31.12 0.23 -1.88 16 16 C -0.11 -1.78 3.52 -10.27 -0.04 -1.81 16 17 C 0.14 2.35 5.51 86.38 0.48 2.82 16 18 N -0.72 -11.08 5.56 -463.05 -2.57 -13.65 16 19 C 0.51 9.94 7.77 87.66 0.68 10.62 16 20 O -0.58 -17.26 15.66 0.47 0.01 -17.25 16 21 C -0.13 -1.55 5.46 29.85 0.16 -1.39 16 22 C 0.08 1.27 2.77 31.28 0.09 1.36 16 23 H 0.06 1.08 7.89 -2.39 -0.02 1.07 16 24 C -0.14 -1.18 6.58 31.90 0.21 -0.97 16 25 C -0.15 -1.28 7.01 31.59 0.22 -1.06 16 26 C 0.04 0.51 7.70 72.35 0.56 1.06 16 27 O -0.40 -8.43 10.90 -145.48 -1.59 -10.02 16 28 C -0.15 -2.32 7.15 31.12 0.22 -2.10 16 29 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.39 14.85 5.76 -92.70 -0.53 14.32 16 31 H 0.11 2.78 8.13 -2.39 -0.02 2.76 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.35 10.02 7.82 -89.69 -0.70 9.32 16 34 H 0.10 1.62 7.87 -2.39 -0.02 1.60 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 40 H 0.41 4.15 8.47 -92.71 -0.79 3.36 16 41 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.56 8.06 -2.39 -0.02 0.54 16 44 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.10 1.31 7.90 -2.39 -0.02 1.29 16 50 H 0.07 1.08 8.07 -2.39 -0.02 1.06 16 Total: -1.00 -85.01 407.40 -2.19 -87.20 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -1.12 Total: 40.92 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.53 Total: 12.17 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.88 Total: -119.54 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -1.63 Total: -60.87 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.12 kcal Total: -85.01 -2.19 -87.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692333922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.349 kcal (2) G-P(sol) polarization free energy of solvation -85.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds