Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.52000 * 2 1 4 4 O 1.21274 * 119.99688 * 239.99561 * 3 2 1 5 5 N 1.34775 * 119.99887 * 59.99830 * 3 2 1 6 6 C 1.46506 * 119.99693 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.27231 * 327.08495 * 6 5 3 8 8 C 1.54595 * 110.30964 * 89.28192 * 6 5 3 9 9 C 1.54934 * 102.92338 * 96.95860 * 8 6 5 10 10 N 1.48535 * 103.22566 * 37.41113 * 9 8 6 11 11 C 1.46899 * 111.00040 * 200.27678 * 10 9 8 12 12 C 1.50700 * 109.47347 * 287.40130 * 11 10 9 13 13 O 1.21286 * 119.99659 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99670 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99753 * 179.97438 * 14 12 11 16 16 H 1.08007 * 119.99847 * 0.02562 * 15 14 12 17 17 C 1.38944 * 120.00052 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46854 * 60.00124 * 19 17 15 21 21 H 1.48494 * 109.47225 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47169 * 300.00312 * 19 17 15 23 23 C 1.47900 * 105.82483 * 320.79510 * 10 9 8 24 24 C 1.53173 * 109.52674 * 239.87201 * 2 1 3 25 25 C 1.53180 * 109.03853 * 183.05252 * 24 2 1 26 26 C 1.53090 * 109.16231 * 56.97862 * 25 24 2 27 27 O 1.42908 * 109.41420 * 302.39168 * 26 25 24 28 28 C 1.43028 * 114.13046 * 61.16478 * 27 26 25 29 29 H 1.09003 * 109.46880 * 60.00531 * 1 2 3 30 30 H 1.09002 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47090 * 300.00214 * 1 2 3 32 32 H 0.97000 * 120.00190 * 359.97438 * 5 3 2 33 33 H 1.09002 * 110.72117 * 215.31589 * 8 6 5 34 34 H 1.08995 * 110.72452 * 338.59650 * 8 6 5 35 35 H 1.08999 * 110.66675 * 278.97969 * 9 8 6 36 36 H 1.08992 * 110.81205 * 155.91355 * 9 8 6 37 37 H 1.09007 * 109.46799 * 47.40288 * 11 10 9 38 38 H 1.09004 * 109.47226 * 167.39642 * 11 10 9 39 39 H 0.97001 * 120.00458 * 0.02562 * 14 12 11 40 40 H 0.96996 * 120.00126 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.91576 * 265.98215 * 23 10 9 42 42 H 1.08994 * 110.08857 * 144.77265 * 23 10 9 43 43 H 1.09003 * 109.54340 * 302.91943 * 24 2 1 44 44 H 1.08994 * 109.54438 * 63.18366 * 24 2 1 45 45 H 1.08991 * 109.52509 * 176.88703 * 25 24 2 46 46 H 1.09008 * 109.51639 * 297.00975 * 25 24 2 47 47 H 1.09000 * 109.48228 * 62.37463 * 26 25 24 48 48 H 1.09002 * 109.47953 * 182.41577 * 26 25 24 49 49 H 1.09006 * 109.56447 * 178.88436 * 28 27 26 50 50 H 1.09002 * 109.47171 * 58.80810 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7312 1.8164 -0.9095 5 7 1.7087 2.2506 1.0108 6 6 2.1978 3.6316 1.0105 7 1 3.1818 3.6836 0.5447 8 6 1.2018 4.5534 0.2700 9 6 0.3659 5.1593 1.4252 10 7 1.3690 5.3585 2.5024 11 6 0.7177 5.4685 3.8145 12 6 0.0202 6.8003 3.9191 13 8 0.0619 7.5811 2.9920 14 7 -0.6500 7.1235 5.0429 15 6 -1.2841 8.3352 5.1382 16 1 -1.2470 9.0306 4.3126 17 6 -1.9755 8.6683 6.2965 18 7 -2.0211 7.8220 7.3009 19 14 -2.8402 10.3191 6.4262 20 1 -3.8623 10.4280 5.3545 21 1 -3.4990 10.4300 7.7524 22 1 -1.8461 11.4118 6.2750 23 6 2.2579 4.1776 2.4491 24 6 2.0420 -0.7246 -1.2486 25 6 3.5718 -0.7851 -1.1992 26 6 4.0058 -1.4793 0.0944 27 8 3.4707 -0.7726 1.2153 28 6 2.0416 -0.7241 1.2481 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1504 1.9339 1.7381 33 1 1.7315 5.3353 -0.2742 34 1 0.5682 3.9754 -0.4026 35 1 -0.4093 4.4631 1.7454 36 1 -0.0731 6.1114 1.1275 37 1 -0.0119 4.6664 3.9263 38 1 1.4686 5.3889 4.6007 39 1 -0.6830 6.4991 5.7845 40 1 -2.5035 8.0547 8.1096 41 1 1.9091 3.4185 3.1493 42 1 3.2798 4.4669 2.6941 43 1 1.6377 -1.7366 -1.2744 44 1 1.7272 -0.1820 -2.1399 45 1 3.9420 -1.3475 -2.0563 46 1 3.9773 0.2265 -1.2246 47 1 3.6339 -2.5039 0.0995 48 1 5.0940 -1.4870 0.1553 49 1 1.7149 -0.1878 2.1391 50 1 1.6440 -1.7388 1.2682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698548614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -114.302760 kcal Electronic energy + Delta-G solvation = -30459.739678 eV Core-core repulsion = 26293.706448 eV Total energy + Delta-G solvation = -4166.033231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16459 -39.42001 -38.33231 -37.42122 -34.84604 -34.54717 -33.80898 -32.47193 -31.30668 -30.68907 -28.53104 -27.40719 -26.56554 -25.47065 -24.29630 -23.68643 -22.09294 -21.31782 -20.55326 -19.68759 -19.16613 -17.87280 -17.36803 -16.78785 -16.40746 -16.04690 -15.95413 -15.46992 -15.26472 -14.96356 -14.64557 -14.54160 -14.43767 -14.24806 -13.91487 -13.58073 -13.30214 -13.02051 -12.99549 -12.69130 -12.57782 -12.45558 -12.34911 -12.17484 -11.83516 -11.80498 -11.48408 -11.37280 -11.28595 -11.15440 -11.02617 -10.95732 -10.84765 -10.74050 -10.43811 -10.20671 -10.01130 -9.62576 -9.47895 -9.14436 -8.49468 -8.00524 -7.93332 -6.40889 -3.81592 2.45584 2.91488 3.20573 3.26072 3.30587 3.50586 3.91544 4.02940 4.08559 4.20445 4.29594 4.37200 4.50840 4.61360 4.71259 4.76699 4.81573 4.96796 5.01568 5.03679 5.16035 5.17577 5.20199 5.25106 5.26619 5.34971 5.37856 5.46695 5.48509 5.57170 5.63640 5.69135 5.75638 5.78610 5.80768 5.91222 5.95731 6.11773 6.15352 6.28040 6.40313 6.43144 6.76715 7.13017 7.18101 7.32424 7.55779 8.06942 8.07180 8.63058 9.19244 9.55493 10.07775 10.76920 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.002056 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.086849 B =13618.436872 C =13874.540730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.535 3.465 4 O -0.533 6.533 5 N -0.719 5.719 6 C 0.135 3.865 7 H 0.099 0.901 8 C -0.129 4.129 9 C 0.041 3.959 10 N -0.489 5.489 11 C 0.037 3.963 12 C 0.445 3.555 13 O -0.576 6.576 14 N -0.566 5.566 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.030 3.970 24 C -0.095 4.095 25 C -0.167 4.167 26 C 0.059 3.941 27 O -0.377 6.377 28 C 0.074 3.926 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.048 0.952 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.938 -22.809 -11.965 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C 0.321 3.679 4 O -0.409 6.409 5 N -0.371 5.371 6 C 0.030 3.970 7 H 0.117 0.883 8 C -0.169 4.169 9 C -0.086 4.086 10 N -0.213 5.213 11 C -0.095 4.095 12 C 0.231 3.769 13 O -0.459 6.459 14 N -0.203 5.203 15 C -0.427 4.427 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.757 3.243 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.099 4.099 24 C -0.132 4.132 25 C -0.205 4.205 26 C -0.017 4.017 27 O -0.295 6.295 28 C -0.004 4.004 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.066 0.934 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.794 -21.383 -12.977 26.198 hybrid contribution -1.481 -0.645 1.064 1.935 sum 6.313 -22.027 -11.912 25.826 Atomic orbital electron populations 1.21799 0.91627 1.03218 1.03191 1.21552 0.97794 0.93705 0.99198 1.20147 0.79526 0.86543 0.81646 1.90633 1.37485 1.77068 1.35763 1.46171 1.53539 1.12121 1.25267 1.21823 0.99015 0.79962 0.96156 0.88290 1.22901 0.97754 0.98639 0.97558 1.23295 0.93199 1.01331 0.90812 1.64507 1.17403 1.36273 1.03147 1.22075 0.98027 0.97354 0.92021 1.19686 0.84097 0.88640 0.84524 1.90511 1.64468 1.52045 1.38899 1.41854 1.46104 1.17763 1.14599 1.19642 1.27516 0.93935 1.01643 0.87997 1.25250 0.98039 0.99513 0.95183 1.69601 1.43169 1.36142 1.05580 0.85923 0.79398 0.81687 0.77245 1.19948 1.21012 1.19887 1.23185 0.99794 0.92156 0.94747 1.21419 0.95943 0.99522 0.96348 1.22391 0.96172 1.04129 0.97788 1.22645 0.99156 0.94197 0.85737 1.88007 1.19421 1.76527 1.45570 1.22644 0.81889 0.99785 0.96063 0.91419 0.91117 0.91712 0.76941 0.89804 0.91079 0.94551 0.88262 0.93319 0.89314 0.77554 0.91865 0.93358 0.89197 0.91374 0.90617 0.91026 0.88479 0.93359 0.88864 0.88595 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.38 37.16 0.31 -0.53 16 2 C -0.12 -0.93 0.63 -155.52 -0.10 -1.03 16 3 C 0.54 5.84 5.91 -10.98 -0.06 5.77 16 4 O -0.53 -7.61 13.49 5.56 0.08 -7.54 16 5 N -0.72 -7.16 4.83 -52.48 -0.25 -7.41 16 6 C 0.14 1.61 3.34 -66.57 -0.22 1.38 16 7 H 0.10 1.29 7.56 -51.93 -0.39 0.90 16 8 C -0.13 -1.69 6.78 -24.87 -0.17 -1.85 16 9 C 0.04 0.64 5.94 -1.90 -0.01 0.63 16 10 N -0.49 -7.96 4.90 -231.89 -1.14 -9.10 16 11 C 0.04 0.64 5.19 -4.98 -0.03 0.62 16 12 C 0.45 10.44 7.61 -10.98 -0.08 10.36 16 13 O -0.58 -15.54 14.64 5.55 0.08 -15.45 16 14 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 16 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 19 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.03 0.37 6.44 -2.75 -0.02 0.35 16 24 C -0.09 -0.74 4.45 -26.55 -0.12 -0.85 16 25 C -0.17 -1.41 5.81 -26.59 -0.15 -1.57 16 26 C 0.06 0.46 6.84 37.20 0.25 0.72 16 27 O -0.38 -3.69 10.45 -35.23 -0.37 -4.06 16 28 C 0.07 0.53 5.48 37.21 0.20 0.74 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 7.57 -51.93 -0.39 -0.05 16 32 H 0.40 3.16 7.16 -40.82 -0.29 2.87 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 35 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 36 H 0.10 1.85 7.10 -51.93 -0.37 1.48 16 37 H 0.05 0.76 7.83 -51.92 -0.41 0.35 16 38 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 39 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.05 0.52 7.26 -51.93 -0.38 0.14 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 1.12 5.82 -51.92 -0.30 0.82 16 47 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.60 7.52 -51.93 -0.39 0.21 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -33.38 391.93 -8.71 -42.09 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -8.22 Total: 10.82 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.44 Total: 6.79 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.72 Total: -54.59 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.21 Total: -27.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.38 -8.71 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698548614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.216 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds