Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.52000 * 2 1 4 4 O 1.21274 * 119.99688 * 239.99561 * 3 2 1 5 5 N 1.34775 * 119.99887 * 59.99830 * 3 2 1 6 6 C 1.46506 * 119.99693 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.27231 * 327.08495 * 6 5 3 8 8 C 1.54595 * 110.30964 * 89.28192 * 6 5 3 9 9 C 1.54934 * 102.92338 * 96.95860 * 8 6 5 10 10 N 1.48535 * 103.22566 * 37.41113 * 9 8 6 11 11 C 1.46899 * 111.00040 * 200.27678 * 10 9 8 12 12 C 1.50700 * 109.47347 * 287.40130 * 11 10 9 13 13 O 1.21286 * 119.99659 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99670 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99753 * 179.97438 * 14 12 11 16 16 H 1.08007 * 119.99847 * 0.02562 * 15 14 12 17 17 C 1.38944 * 120.00052 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46854 * 60.00124 * 19 17 15 21 21 H 1.48494 * 109.47225 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47169 * 300.00312 * 19 17 15 23 23 C 1.47900 * 105.82483 * 320.79510 * 10 9 8 24 24 C 1.53173 * 109.52674 * 239.87201 * 2 1 3 25 25 C 1.53180 * 109.03853 * 183.05252 * 24 2 1 26 26 C 1.53090 * 109.16231 * 56.97862 * 25 24 2 27 27 O 1.42908 * 109.41420 * 302.39168 * 26 25 24 28 28 C 1.43028 * 114.13046 * 61.16478 * 27 26 25 29 29 H 1.09003 * 109.46880 * 60.00531 * 1 2 3 30 30 H 1.09002 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47090 * 300.00214 * 1 2 3 32 32 H 0.97000 * 120.00190 * 359.97438 * 5 3 2 33 33 H 1.09002 * 110.72117 * 215.31589 * 8 6 5 34 34 H 1.08995 * 110.72452 * 338.59650 * 8 6 5 35 35 H 1.08999 * 110.66675 * 278.97969 * 9 8 6 36 36 H 1.08992 * 110.81205 * 155.91355 * 9 8 6 37 37 H 1.09007 * 109.46799 * 47.40288 * 11 10 9 38 38 H 1.09004 * 109.47226 * 167.39642 * 11 10 9 39 39 H 0.97001 * 120.00458 * 0.02562 * 14 12 11 40 40 H 0.96996 * 120.00126 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.91576 * 265.98215 * 23 10 9 42 42 H 1.08994 * 110.08857 * 144.77265 * 23 10 9 43 43 H 1.09003 * 109.54340 * 302.91943 * 24 2 1 44 44 H 1.08994 * 109.54438 * 63.18366 * 24 2 1 45 45 H 1.08991 * 109.52509 * 176.88703 * 25 24 2 46 46 H 1.09008 * 109.51639 * 297.00975 * 25 24 2 47 47 H 1.09000 * 109.48228 * 62.37463 * 26 25 24 48 48 H 1.09002 * 109.47953 * 182.41577 * 26 25 24 49 49 H 1.09006 * 109.56447 * 178.88436 * 28 27 26 50 50 H 1.09002 * 109.47171 * 58.80810 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7312 1.8164 -0.9095 5 7 1.7087 2.2506 1.0108 6 6 2.1978 3.6316 1.0105 7 1 3.1818 3.6836 0.5447 8 6 1.2018 4.5534 0.2700 9 6 0.3659 5.1593 1.4252 10 7 1.3690 5.3585 2.5024 11 6 0.7177 5.4685 3.8145 12 6 0.0202 6.8003 3.9191 13 8 0.0619 7.5811 2.9920 14 7 -0.6500 7.1235 5.0429 15 6 -1.2841 8.3352 5.1382 16 1 -1.2470 9.0306 4.3126 17 6 -1.9755 8.6683 6.2965 18 7 -2.0211 7.8220 7.3009 19 14 -2.8402 10.3191 6.4262 20 1 -3.8623 10.4280 5.3545 21 1 -3.4990 10.4300 7.7524 22 1 -1.8461 11.4118 6.2750 23 6 2.2579 4.1776 2.4491 24 6 2.0420 -0.7246 -1.2486 25 6 3.5718 -0.7851 -1.1992 26 6 4.0058 -1.4793 0.0944 27 8 3.4707 -0.7726 1.2153 28 6 2.0416 -0.7241 1.2481 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1504 1.9339 1.7381 33 1 1.7315 5.3353 -0.2742 34 1 0.5682 3.9754 -0.4026 35 1 -0.4093 4.4631 1.7454 36 1 -0.0731 6.1114 1.1275 37 1 -0.0119 4.6664 3.9263 38 1 1.4686 5.3889 4.6007 39 1 -0.6830 6.4991 5.7845 40 1 -2.5035 8.0547 8.1096 41 1 1.9091 3.4185 3.1493 42 1 3.2798 4.4669 2.6941 43 1 1.6377 -1.7366 -1.2744 44 1 1.7272 -0.1820 -2.1399 45 1 3.9420 -1.3475 -2.0563 46 1 3.9773 0.2265 -1.2246 47 1 3.6339 -2.5039 0.0995 48 1 5.0940 -1.4870 0.1553 49 1 1.7149 -0.1878 2.1391 50 1 1.6440 -1.7388 1.2682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698548614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -140.296750 kcal Electronic energy + Delta-G solvation = -30460.866862 eV Core-core repulsion = 26293.706448 eV Total energy + Delta-G solvation = -4167.160415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92370 -40.64273 -39.60717 -38.67920 -36.00820 -35.54344 -35.32250 -33.34670 -33.10898 -31.88551 -29.63201 -28.11966 -27.89148 -26.11266 -25.95283 -24.48284 -22.80269 -22.52736 -21.55961 -20.96132 -20.46198 -19.86026 -18.08385 -17.99166 -17.42671 -17.01922 -16.77328 -16.64440 -16.41965 -16.15169 -16.06642 -15.76009 -15.47185 -15.33545 -15.06810 -14.70562 -14.68522 -14.22508 -13.65805 -13.59273 -13.57762 -13.42562 -13.21229 -13.06200 -12.99509 -12.93013 -12.91633 -12.77770 -12.46266 -12.40799 -12.33400 -12.11694 -11.98442 -11.92472 -11.54661 -11.46912 -11.44937 -10.71271 -10.37875 -10.29664 -10.05400 -9.98902 -9.31333 -8.45047 -5.93278 1.40176 1.41998 1.52559 1.64384 2.08168 2.09160 2.30031 2.83556 2.96844 3.21728 3.36966 3.49989 3.51871 3.63875 3.75346 3.82386 3.98013 4.05930 4.12238 4.23993 4.26752 4.33397 4.35368 4.44911 4.47801 4.54381 4.54799 4.66147 4.69241 4.70805 4.73974 4.80616 4.86871 4.92437 4.97907 5.02101 5.04367 5.11168 5.19337 5.23658 5.40347 5.42322 5.52678 5.84837 5.94864 6.09655 6.21769 6.53476 6.63179 7.15252 7.26651 7.59111 8.15734 8.72137 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.002056 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.086849 B =13618.436872 C =13874.540730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.529 3.471 4 O -0.573 6.573 5 N -0.710 5.710 6 C 0.146 3.854 7 H 0.086 0.914 8 C -0.120 4.120 9 C 0.046 3.954 10 N -0.515 5.515 11 C 0.050 3.950 12 C 0.441 3.559 13 O -0.617 6.617 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.991 3.009 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.037 3.963 24 C -0.096 4.096 25 C -0.167 4.167 26 C 0.058 3.942 27 O -0.403 6.403 28 C 0.070 3.930 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.107 0.893 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -25.284 -10.929 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C 0.317 3.683 4 O -0.452 6.452 5 N -0.362 5.362 6 C 0.040 3.960 7 H 0.104 0.896 8 C -0.159 4.159 9 C -0.082 4.082 10 N -0.240 5.240 11 C -0.081 4.081 12 C 0.229 3.771 13 O -0.503 6.503 14 N -0.213 5.213 15 C -0.461 4.461 16 H 0.095 0.905 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.814 3.186 20 H -0.198 1.198 21 H -0.194 1.194 22 H -0.199 1.199 23 C -0.091 4.091 24 C -0.133 4.133 25 C -0.204 4.204 26 C -0.018 4.018 27 O -0.322 6.322 28 C -0.007 4.007 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.246 0.754 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.125 0.875 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.179 -23.897 -11.912 27.650 hybrid contribution -1.243 0.115 0.677 1.420 sum 5.936 -23.782 -11.234 26.964 Atomic orbital electron populations 1.21821 0.89907 1.04736 1.03123 1.21574 0.98995 0.91310 0.99765 1.20826 0.78726 0.87825 0.80919 1.90628 1.39221 1.78032 1.37283 1.46052 1.53405 1.11140 1.25618 1.21551 0.97997 0.80832 0.95647 0.89556 1.22783 0.97680 0.98548 0.96875 1.23139 0.93731 0.99709 0.91609 1.64396 1.17935 1.39009 1.02622 1.21943 0.98778 0.94008 0.93413 1.20797 0.82884 0.90362 0.83089 1.90489 1.65592 1.54073 1.40135 1.41915 1.46647 1.17290 1.15444 1.19588 1.29652 0.95125 1.01751 0.90527 1.25995 0.98073 1.02727 0.94463 1.69656 1.43270 1.37366 1.05822 0.85025 0.78249 0.77545 0.77741 1.19753 1.19449 1.19899 1.23165 0.99172 0.91361 0.95401 1.21458 0.95440 1.00717 0.95719 1.22337 0.96785 1.02329 0.98979 1.22729 0.99401 0.94976 0.84719 1.87969 1.20949 1.77060 1.46206 1.22850 0.80794 1.01222 0.95843 0.92525 0.88833 0.90779 0.75398 0.91032 0.90431 0.93153 0.92259 0.90523 0.87057 0.76969 0.91331 0.90672 0.88698 0.88707 0.92287 0.89819 0.92070 0.91058 0.88824 0.87507 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.38 71.98 0.60 -0.64 16 2 C -0.11 -1.52 0.63 -52.84 -0.03 -1.56 16 3 C 0.53 11.03 5.91 87.66 0.52 11.55 16 4 O -0.57 -16.64 13.49 -3.01 -0.04 -16.68 16 5 N -0.71 -12.88 4.83 -438.36 -2.12 -15.00 16 6 C 0.15 3.31 3.34 45.87 0.15 3.47 16 7 H 0.09 2.25 7.56 -2.39 -0.02 2.23 16 8 C -0.12 -3.12 6.78 31.80 0.22 -2.90 16 9 C 0.05 1.41 5.94 86.65 0.51 1.93 16 10 N -0.51 -16.26 4.90 -887.57 -4.35 -20.61 16 11 C 0.05 1.66 5.19 85.56 0.44 2.10 16 12 C 0.44 20.87 7.61 87.66 0.67 21.53 16 13 O -0.62 -34.39 14.64 -3.05 -0.04 -34.43 16 14 N -0.58 -29.26 5.29 -306.98 -1.62 -30.88 16 15 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 16 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 17 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 18 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 19 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.04 0.84 6.44 86.45 0.56 1.39 16 24 C -0.10 -1.33 4.45 30.71 0.14 -1.19 16 25 C -0.17 -2.69 5.81 30.68 0.18 -2.51 16 26 C 0.06 0.80 6.84 72.01 0.49 1.29 16 27 O -0.40 -7.06 10.45 -148.98 -1.56 -8.62 16 28 C 0.07 0.79 5.48 72.01 0.39 1.19 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.54 7.57 -2.39 -0.02 0.52 16 32 H 0.41 5.29 7.16 -92.71 -0.66 4.63 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 35 H 0.05 1.39 7.81 -2.39 -0.02 1.37 16 36 H 0.06 2.31 7.10 -2.39 -0.02 2.29 16 37 H 0.08 2.14 7.83 -2.38 -0.02 2.12 16 38 H 0.11 3.22 8.08 -2.38 -0.02 3.20 16 39 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.08 1.33 7.26 -2.38 -0.02 1.31 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.01 8.02 -2.39 -0.02 0.99 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 1.46 5.82 -2.38 -0.01 1.44 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.11 0.94 7.52 -2.38 -0.02 0.93 16 50 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -75.03 391.93 -1.74 -76.78 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.44 Total: 36.01 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 6.12 Total: 17.42 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -7.81 Total: -115.49 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -1.64 Total: -59.73 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.03 -1.74 -76.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698548614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.518 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds