Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99686 * 2 1 4 4 H 1.09002 * 109.47350 * 23.32008 * 3 2 1 5 5 C 1.50703 * 109.46918 * 143.32264 * 3 2 1 6 6 O 1.21275 * 120.00027 * 5.00000 * 5 3 2 7 7 N 1.34782 * 119.99529 * 184.99888 * 5 3 2 8 8 C 1.46503 * 119.99627 * 179.97438 * 7 5 3 9 9 C 1.53007 * 110.27314 * 57.91060 * 8 7 5 10 10 C 1.54779 * 110.15297 * 295.71445 * 8 7 5 11 11 C 1.54942 * 102.83440 * 262.84629 * 10 8 7 12 12 N 1.48531 * 103.37580 * 322.80166 * 11 10 8 13 13 C 1.46899 * 110.99995 * 159.63610 * 12 11 10 14 14 C 1.50695 * 109.47050 * 69.87372 * 13 12 11 15 15 O 1.21292 * 120.00482 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00034 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00404 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99523 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00457 * 180.02562 * 17 16 14 20 20 N 1.31418 * 120.00044 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00016 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47034 * 90.00268 * 21 19 17 23 23 H 1.48499 * 109.46972 * 209.99934 * 21 19 17 24 24 H 1.48494 * 109.47428 * 329.99856 * 21 19 17 25 25 C 1.47906 * 105.82096 * 39.12321 * 12 11 10 26 26 C 1.52999 * 109.47129 * 263.32098 * 3 2 1 27 27 C 1.53007 * 117.49664 * 11.63306 * 26 3 2 28 28 C 1.53000 * 117.49922 * 302.97727 * 26 3 2 29 29 H 1.08993 * 109.47091 * 54.69642 * 1 2 3 30 30 H 1.09002 * 109.46921 * 174.69891 * 1 2 3 31 31 H 1.09002 * 109.47086 * 294.69205 * 1 2 3 32 32 H 0.96999 * 120.00328 * 359.97438 * 7 5 3 33 33 H 1.08996 * 109.47207 * 182.09161 * 9 8 7 34 34 H 1.09001 * 109.46842 * 302.08485 * 9 8 7 35 35 H 1.08996 * 109.47148 * 62.08781 * 9 8 7 36 36 H 1.08994 * 110.65533 * 144.57214 * 10 8 7 37 37 H 1.09003 * 110.87654 * 21.22504 * 10 8 7 38 38 H 1.08998 * 110.66845 * 204.28198 * 11 10 8 39 39 H 1.09008 * 110.66454 * 81.31636 * 11 10 8 40 40 H 1.08997 * 109.47061 * 189.87336 * 13 12 11 41 41 H 1.08997 * 109.47120 * 309.87107 * 13 12 11 42 42 H 0.97000 * 120.00081 * 359.97438 * 16 14 13 43 43 H 0.96994 * 120.00206 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.91598 * 94.02613 * 25 12 11 45 45 H 1.09003 * 109.91482 * 215.31826 * 25 12 11 46 46 H 1.08993 * 115.55421 * 157.30383 * 26 3 2 47 47 H 1.08997 * 117.49772 * 359.97438 * 27 26 3 48 48 H 1.09005 * 117.49382 * 145.01856 * 27 26 3 49 49 H 1.08997 * 117.49709 * 214.98134 * 28 26 3 50 50 H 1.09004 * 117.49704 * 359.97169 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2958 2.0213 0.4068 5 6 3.2555 1.3009 0.8487 6 8 3.6609 0.2619 1.3251 7 7 3.9187 2.4516 1.0782 8 6 5.1290 2.4473 1.9037 9 6 6.1736 1.5010 1.3082 10 6 4.7841 2.0296 3.3536 11 6 4.6500 3.3909 4.0813 12 7 5.7116 4.2207 3.4563 13 6 5.4449 5.6519 3.6524 14 6 5.6376 6.0045 5.1048 15 8 5.9645 5.1477 5.8987 16 7 5.4468 7.2718 5.5217 17 6 5.6216 7.5926 6.8431 18 1 5.9119 6.8294 7.5501 19 6 5.4244 8.8990 7.2730 20 7 5.0697 9.8273 6.4130 21 14 5.6633 9.3360 9.0734 22 1 7.0746 9.7370 9.3023 23 1 4.7643 10.4619 9.4329 24 1 5.3409 8.1566 9.9161 25 6 5.7023 3.8718 2.0190 26 6 2.3709 1.7032 -1.4327 27 6 1.8265 0.8314 -2.5661 28 6 3.3134 0.7790 -2.2064 29 1 -0.3633 0.5939 -0.8386 30 1 -0.3633 -1.0233 -0.0949 31 1 -0.3633 0.4293 0.9337 32 1 3.5947 3.2826 0.6969 33 1 7.0531 1.4795 1.9516 34 1 5.7540 0.4979 1.2328 35 1 6.4577 1.8516 0.3160 36 1 5.5917 1.4391 3.7861 37 1 3.8431 1.4805 3.3862 38 1 4.8310 3.2754 5.1499 39 1 3.6667 3.8267 3.9039 40 1 6.1332 6.2367 3.0421 41 1 4.4194 5.8741 3.3575 42 1 5.1857 7.9571 4.8868 43 1 4.9323 10.7394 6.7130 44 1 5.0713 4.5716 1.4711 45 1 6.7181 3.8963 1.6245 46 1 2.4531 2.7743 -1.6168 47 1 1.2117 -0.0256 -2.2911 48 1 1.5509 1.3291 -3.4960 49 1 4.0155 1.2423 -2.8996 50 1 3.6768 -0.1120 -1.6945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699815850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -72.433511 kcal Electronic energy + Delta-G solvation = -30346.768147 eV Core-core repulsion = 26182.550503 eV Total energy + Delta-G solvation = -4164.217644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83139 -39.44211 -38.28769 -37.34253 -36.25000 -34.58514 -33.78852 -31.88272 -31.19355 -29.74419 -28.89407 -27.52431 -26.45763 -25.29512 -23.89455 -22.81905 -22.27540 -21.38348 -20.51931 -19.59523 -19.13303 -17.89729 -17.65100 -17.30602 -16.73082 -16.18461 -15.81573 -15.25054 -15.12784 -14.97947 -14.61964 -14.58307 -14.40126 -14.01239 -13.79760 -13.55609 -13.35058 -13.16509 -12.97245 -12.61551 -12.42267 -12.17992 -12.06296 -11.79106 -11.76599 -11.72798 -11.49559 -11.28564 -11.22717 -11.01845 -10.89236 -10.85960 -10.81194 -10.70177 -10.39450 -10.21808 -10.21619 -9.49348 -9.47463 -9.16388 -8.48944 -8.01684 -7.93789 -6.41734 -3.82326 2.42669 2.61211 3.17919 3.26450 3.29979 3.32354 3.64989 3.90740 4.05259 4.18448 4.27434 4.34650 4.45736 4.50566 4.73123 4.78236 4.80882 4.87380 4.89434 5.00831 5.04825 5.13397 5.24026 5.28865 5.33134 5.33552 5.46680 5.48732 5.51362 5.67549 5.70986 5.72753 5.81276 5.83248 5.85203 5.94109 6.02735 6.21262 6.26564 6.28198 6.45687 6.48636 6.63998 7.13772 7.18116 7.35535 7.55418 8.06498 8.08589 8.62175 9.18632 9.54645 10.06810 10.76177 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.002127 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.502364 B =13159.078207 C =13418.704099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.100 3.900 4 H 0.090 0.910 5 C 0.520 3.480 6 O -0.512 6.512 7 N -0.717 5.717 8 C 0.167 3.833 9 C -0.155 4.155 10 C -0.120 4.120 11 C 0.040 3.960 12 N -0.487 5.487 13 C 0.037 3.963 14 C 0.445 3.555 15 O -0.576 6.576 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.035 3.965 26 C -0.185 4.185 27 C -0.165 4.165 28 C -0.164 4.164 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.117 0.883 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -13.552 -20.197 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.272 6.272 3 C 0.038 3.962 4 H 0.107 0.893 5 C 0.305 3.695 6 O -0.386 6.386 7 N -0.371 5.371 8 C 0.081 3.919 9 C -0.213 4.213 10 C -0.159 4.159 11 C -0.087 4.087 12 N -0.212 5.212 13 C -0.095 4.095 14 C 0.231 3.769 15 O -0.459 6.459 16 N -0.203 5.203 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.093 4.093 26 C -0.204 4.204 27 C -0.202 4.202 28 C -0.201 4.201 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.231 0.769 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.275 -14.966 -19.023 25.274 hybrid contribution -1.304 1.903 -0.167 2.313 sum -8.579 -13.063 -19.190 24.749 Atomic orbital electron populations 1.22946 0.80562 1.03238 1.00344 1.88025 1.19715 1.24847 1.94580 1.21416 0.94272 0.87010 0.93473 0.89258 1.20220 0.84729 0.83985 0.80583 1.90693 1.66797 1.31406 1.49710 1.46186 1.27913 1.09848 1.53166 1.21220 0.84071 0.95679 0.90912 1.22162 0.97967 1.00793 1.00359 1.22899 1.02752 0.97348 0.92936 1.23322 0.91977 0.91782 1.01650 1.64547 1.45093 1.03949 1.07566 1.22079 1.00011 0.89665 0.97757 1.19677 0.84666 0.83686 0.88919 1.90512 1.51772 1.48215 1.55401 1.41857 1.60684 1.07754 1.10013 1.19694 1.43498 0.94705 0.84753 0.87928 1.25252 0.97273 0.95406 1.00076 1.69611 1.47513 1.02542 1.34840 0.85861 0.78150 0.78170 0.82143 1.20392 1.20974 1.19434 1.23223 1.01496 0.93459 0.91149 1.22706 1.07940 0.98064 0.91672 1.22962 0.97480 1.02112 0.97643 1.22924 0.92879 1.01690 1.02581 0.93512 0.89122 0.93715 0.76890 0.91126 0.90253 0.92817 0.89775 0.90624 0.88043 0.94624 0.89296 0.93383 0.77565 0.91923 0.93497 0.89039 0.86552 0.87901 0.88743 0.88694 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.98 101.05 1.01 1.18 16 2 O -0.35 -3.63 8.59 -55.09 -0.47 -4.11 16 3 C 0.10 0.88 2.97 -27.88 -0.08 0.79 16 4 H 0.09 0.61 7.74 -51.93 -0.40 0.21 16 5 C 0.52 5.90 6.09 -10.98 -0.07 5.84 16 6 O -0.51 -7.79 13.40 -14.30 -0.19 -7.98 16 7 N -0.72 -7.02 5.11 -46.26 -0.24 -7.26 16 8 C 0.17 1.96 0.95 -130.36 -0.12 1.84 16 9 C -0.15 -1.78 8.16 37.16 0.30 -1.48 16 10 C -0.12 -1.70 5.86 -24.77 -0.15 -1.84 16 11 C 0.04 0.65 5.86 -1.90 -0.01 0.64 16 12 N -0.49 -7.97 4.96 -231.89 -1.15 -9.12 16 13 C 0.04 0.64 5.18 -4.98 -0.03 0.61 16 14 C 0.45 10.44 7.58 -10.99 -0.08 10.36 16 15 O -0.58 -15.52 14.42 5.55 0.08 -15.44 16 16 N -0.57 -14.25 5.29 -10.96 -0.06 -14.30 16 17 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 21 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.04 0.43 6.14 -2.75 -0.02 0.41 16 26 C -0.19 -1.29 5.77 -90.62 -0.52 -1.82 16 27 C -0.17 -1.10 9.54 -26.69 -0.25 -1.35 16 28 C -0.16 -1.28 9.85 -26.69 -0.26 -1.54 16 29 H 0.05 0.24 7.58 -51.93 -0.39 -0.16 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 2.89 8.09 -40.82 -0.33 2.56 16 33 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.08 1.05 6.03 -51.93 -0.31 0.74 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.23 7.85 -51.93 -0.41 0.83 16 37 H 0.08 1.11 6.82 -51.93 -0.35 0.75 16 38 H 0.10 1.98 6.91 -51.93 -0.36 1.62 16 39 H 0.04 0.56 7.85 -51.92 -0.41 0.15 16 40 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 41 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.05 0.48 7.09 -51.93 -0.37 0.11 16 45 H 0.09 1.05 7.68 -51.93 -0.40 0.65 16 46 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.74 6.25 -51.93 -0.32 0.41 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -33.70 399.18 -8.94 -42.64 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -8.11 Total: 11.55 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.52 Total: 5.71 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.72 Total: -54.42 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.58 Total: -27.53 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.70 -8.94 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699815850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.794 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds