Wall clock time and date at job start Sat Apr 11 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.49811 * 2 1 4 4 N 1.46505 * 109.46775 * 300.00009 * 3 2 1 5 5 C 1.34775 * 119.99678 * 179.72193 * 4 3 2 6 6 O 1.21280 * 120.00012 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99759 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.87355 * 303.99288 * 7 5 4 9 9 C 1.54102 * 109.87739 * 65.00499 * 7 5 4 10 10 C 1.54809 * 104.18776 * 121.45202 * 9 7 5 11 11 C 1.54996 * 102.09596 * 20.87963 * 10 9 7 12 12 H 1.09001 * 110.61560 * 81.47168 * 11 10 9 13 13 C 1.50695 * 110.62049 * 204.31714 * 11 10 9 14 14 N 1.34772 * 120.00183 * 294.99948 * 13 11 10 15 15 O 1.21281 * 119.99945 * 114.99879 * 13 11 10 16 16 O 1.43749 * 109.87962 * 182.83441 * 7 5 4 17 17 C 1.53048 * 109.49944 * 120.06277 * 2 1 3 18 18 C 1.53038 * 109.53496 * 58.62161 * 17 2 1 19 19 C 1.53193 * 109.31523 * 61.36613 * 18 17 2 20 20 N 1.46918 * 108.77501 * 305.36258 * 19 18 17 21 21 C 1.36938 * 120.63078 * 233.61084 * 20 19 18 22 22 H 1.07996 * 120.00190 * 27.68560 * 21 20 19 23 23 C 1.38820 * 119.99758 * 207.68637 * 21 20 19 24 24 N 1.31617 * 120.00171 * 17.35373 * 23 21 20 25 25 Si 1.86798 * 119.99772 * 197.34811 * 23 21 20 26 26 H 1.48507 * 109.46824 * 90.00466 * 25 23 21 27 27 H 1.48498 * 109.47005 * 210.00150 * 25 23 21 28 28 H 1.48500 * 109.47353 * 330.00550 * 25 23 21 29 29 C 1.46940 * 118.76427 * 53.58856 * 20 19 18 30 30 H 1.08995 * 109.47177 * 60.00319 * 1 2 3 31 31 H 1.09003 * 109.46517 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46937 * 299.99657 * 1 2 3 33 33 H 1.08997 * 109.47328 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47188 * 59.99849 * 3 2 1 35 35 H 0.96998 * 120.00035 * 0.02562 * 4 3 2 36 36 H 1.09001 * 110.48710 * 240.12729 * 9 7 5 37 37 H 1.08994 * 110.48918 * 2.64013 * 9 7 5 38 38 H 1.09007 * 110.90886 * 139.07863 * 10 9 7 39 39 H 1.08999 * 110.90676 * 262.64517 * 10 9 7 40 40 H 0.97004 * 119.99880 * 0.02562 * 14 13 11 41 41 H 0.97003 * 120.00462 * 180.02562 * 14 13 11 42 42 H 1.08997 * 109.46160 * 178.63907 * 17 2 1 43 43 H 1.08996 * 109.45833 * 298.61204 * 17 2 1 44 44 H 1.09003 * 109.49665 * 181.32056 * 18 17 2 45 45 H 1.09002 * 109.49620 * 301.37568 * 18 17 2 46 46 H 1.09004 * 109.58514 * 65.14978 * 19 18 17 47 47 H 1.09002 * 109.58234 * 185.57490 * 19 18 17 48 48 H 0.96999 * 120.00137 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.61577 * 186.64320 * 29 20 19 50 50 H 1.08998 * 109.56300 * 66.21562 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5526 2.1330 -1.1962 5 6 1.8741 3.4248 -1.4067 6 8 2.5679 4.0153 -0.6061 7 6 1.3726 4.1353 -2.6375 8 1 1.6772 3.5894 -3.5304 9 6 -0.1637 4.2456 -2.5893 10 6 -0.4372 5.7677 -2.6590 11 6 0.8793 6.3064 -3.2744 12 1 0.8735 6.1871 -4.3579 13 6 1.0865 7.7520 -2.9024 14 7 0.2296 8.6920 -3.3478 15 8 2.0245 8.0694 -2.2021 16 8 1.8960 5.4735 -2.6768 17 6 2.0408 -0.7227 1.2486 18 6 1.5038 -2.1556 1.2662 19 6 2.0155 -2.9038 0.0312 20 7 1.6529 -2.1383 -1.1692 21 6 0.9654 -2.7319 -2.1940 22 1 0.3098 -3.5661 -1.9926 23 6 1.1112 -2.2613 -3.4919 24 7 2.1357 -1.4959 -3.8032 25 14 -0.1465 -2.7146 -4.7965 26 1 -1.2292 -1.6983 -4.8144 27 1 0.5134 -2.7584 -6.1261 28 1 -0.7235 -4.0472 -4.4860 29 6 2.0414 -0.7235 -1.2497 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1306 1.4418 -0.0005 34 1 1.6775 1.9563 0.8900 35 1 0.9944 1.6620 -1.8345 36 1 -0.6096 3.7383 -3.4448 37 1 -0.5471 3.8292 -1.6578 38 1 -1.2862 5.9811 -3.3086 39 1 -0.5988 6.1798 -1.6629 40 1 -0.5208 8.4380 -3.9076 41 1 0.3632 9.6225 -3.1087 42 1 3.1305 -0.7435 1.2359 43 1 1.6981 -0.1956 2.1390 44 1 1.8488 -2.6624 2.1675 45 1 0.4140 -2.1358 1.2547 46 1 3.0995 -3.0035 0.0875 47 1 1.5573 -3.8919 -0.0132 48 1 2.2378 -1.1673 -4.7101 49 1 1.6003 -0.2729 -2.1389 50 1 3.1275 -0.6454 -1.2985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699873213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:27 Heat of formation + Delta-G solvation = -103.078305 kcal Electronic energy + Delta-G solvation = -31183.898347 eV Core-core repulsion = 27018.351845 eV Total energy + Delta-G solvation = -4165.546502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71867 -39.54592 -38.62113 -37.65750 -34.75953 -34.09367 -33.28248 -32.36736 -31.44917 -30.17708 -29.79093 -26.62513 -25.93627 -25.34404 -24.26203 -22.43604 -22.12715 -20.82652 -20.61757 -20.06415 -18.31753 -17.90981 -17.52515 -16.79764 -16.69561 -16.45366 -15.97558 -15.17270 -14.97655 -14.77704 -14.58397 -14.43606 -14.04287 -13.90056 -13.77273 -13.50582 -13.43171 -13.16057 -12.76906 -12.40556 -12.31296 -12.23024 -12.00965 -11.89020 -11.55217 -11.34580 -11.25497 -11.00424 -10.90339 -10.69020 -10.47317 -10.42294 -10.20447 -10.12309 -10.02071 -9.96788 -9.85554 -9.64401 -9.40013 -9.28886 -8.69459 -8.53059 -6.71206 -5.84859 -3.26790 2.32594 2.66596 2.86913 3.29112 3.34600 3.38387 3.39274 3.88769 4.13866 4.42383 4.42929 4.53444 4.71399 4.79658 4.87922 5.10325 5.18498 5.26045 5.30538 5.37361 5.42954 5.49495 5.56480 5.57398 5.69854 5.77136 5.95574 6.03316 6.08128 6.15128 6.25825 6.34382 6.39357 6.42326 6.51658 6.53031 6.60052 6.75693 6.82121 6.87010 6.94703 6.97994 7.02499 7.26386 7.54627 7.73337 7.81114 7.97222 8.37916 8.49921 9.15068 9.78491 10.36211 11.22911 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.003156 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.251080 B = 8870.104027 C =10288.652451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.138 3.862 4 N -0.715 5.715 5 C 0.511 3.489 6 O -0.525 6.525 7 C 0.056 3.944 8 H 0.104 0.896 9 C -0.146 4.146 10 C -0.141 4.141 11 C 0.053 3.947 12 H 0.101 0.899 13 C 0.522 3.478 14 N -0.854 5.854 15 O -0.513 6.513 16 O -0.316 6.316 17 C -0.096 4.096 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.248 4.248 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.901 5.901 25 Si 0.898 3.102 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.280 1.280 29 C 0.186 3.814 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.405 0.595 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.401 0.599 41 H 0.405 0.595 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.017 0.983 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.088 0.912 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 13.410 0.715 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 C 0.014 3.986 4 N -0.369 5.369 5 C 0.295 3.705 6 O -0.401 6.401 7 C -0.005 4.005 8 H 0.121 0.879 9 C -0.184 4.184 10 C -0.179 4.179 11 C -0.008 4.008 12 H 0.119 0.881 13 C 0.305 3.695 14 N -0.420 5.420 15 O -0.386 6.386 16 O -0.232 6.232 17 C -0.134 4.134 18 C -0.174 4.174 19 C 0.017 3.983 20 N -0.311 5.311 21 C -0.378 4.378 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.546 5.546 25 Si 0.728 3.272 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.059 3.941 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.229 0.771 41 H 0.236 0.764 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.106 0.894 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -7.867 13.936 1.682 16.092 hybrid contribution -1.326 -0.279 -1.412 1.957 sum -9.194 13.657 0.269 16.465 Atomic orbital electron populations 1.21716 0.94557 1.02611 0.99360 1.21538 0.96431 0.92697 0.99777 1.21383 0.98986 0.91909 0.86331 1.45972 1.53670 1.11006 1.26223 1.20229 0.81005 0.82208 0.87090 1.90725 1.37017 1.66093 1.46222 1.22742 0.93948 0.85786 0.98042 0.87883 1.22958 0.93878 0.96568 1.05005 1.23111 0.96499 0.95494 1.02788 1.23032 0.89172 0.89614 0.98989 0.88106 1.20179 0.82225 0.87292 0.79760 1.43719 1.31412 1.10750 1.56162 1.90824 1.29978 1.82074 1.35758 1.89156 1.35865 1.16210 1.82017 1.21350 1.00022 0.95982 0.96035 1.22045 1.00943 0.95720 0.98681 1.20932 0.96413 0.94219 0.86758 1.44002 1.65335 1.05602 1.16185 1.19192 1.17820 1.14925 0.85813 0.91719 1.25010 0.97030 1.00764 0.96836 1.70048 1.27250 1.38587 1.18724 0.86349 0.81121 0.78322 0.81363 1.21517 1.21828 1.20504 1.20800 0.96278 0.83710 0.93285 0.93728 0.90971 0.94551 0.91788 0.92291 0.75841 0.88733 0.89254 0.88893 0.89697 0.77080 0.76367 0.92523 0.93378 0.93214 0.91977 0.96538 0.92953 0.93678 0.89366 0.96403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 7.81 37.16 0.29 -1.74 16 2 C -0.10 -1.76 0.53 -154.39 -0.08 -1.84 16 3 C 0.14 2.30 4.57 -4.04 -0.02 2.28 16 4 N -0.71 -11.34 4.97 -60.29 -0.30 -11.64 16 5 C 0.51 8.67 6.95 -10.99 -0.08 8.59 16 6 O -0.53 -11.23 16.53 -14.02 -0.23 -11.46 16 7 C 0.06 0.76 3.84 -27.31 -0.10 0.65 16 8 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 9 C -0.15 -1.37 6.61 -25.20 -0.17 -1.54 16 10 C -0.14 -1.11 6.56 -24.72 -0.16 -1.27 16 11 C 0.05 0.55 3.76 -26.83 -0.10 0.45 16 12 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 13 C 0.52 5.97 7.48 -10.99 -0.08 5.89 16 14 N -0.85 -5.00 8.86 31.22 0.28 -4.73 16 15 O -0.51 -8.92 17.41 -13.43 -0.23 -9.15 16 16 O -0.32 -4.96 10.03 -64.27 -0.64 -5.61 16 17 C -0.10 -1.54 4.71 -26.69 -0.13 -1.67 16 18 C -0.13 -2.21 5.74 -26.61 -0.15 -2.36 16 19 C 0.14 2.86 6.52 -3.71 -0.02 2.83 16 20 N -0.59 -13.64 2.44 -172.31 -0.42 -14.06 16 21 C -0.25 -6.32 9.58 -15.06 -0.14 -6.46 16 22 H 0.07 1.65 7.89 -52.49 -0.41 1.23 16 23 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 24 N -0.90 -24.31 11.19 55.49 0.62 -23.69 16 25 Si 0.90 20.24 29.59 -169.99 -5.03 15.21 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.19 4.01 3.73 -3.70 -0.01 4.00 16 30 H 0.04 0.70 6.86 -51.93 -0.36 0.34 16 31 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 6.13 6.22 -40.82 -0.25 5.88 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.88 7.69 -51.93 -0.40 0.48 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.40 0.91 8.83 -40.82 -0.36 0.55 16 41 H 0.40 2.01 8.93 -40.82 -0.36 1.65 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 48 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 49 H 0.09 2.06 4.94 -51.93 -0.26 1.80 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -35.85 391.30 -9.20 -45.05 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.08 Total: 6.41 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.05 Total: 7.78 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.18 Total: -54.12 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.11 Total: -26.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.85 -9.20 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699873213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.030 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds