Wall clock time and date at job start Sat Apr 11 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.21613 * 2 1 4 4 C 1.52999 * 109.47321 * 63.06473 * 3 2 1 5 5 C 1.50697 * 109.47331 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99784 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00254 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00237 * 175.07616 * 7 5 4 9 9 C 1.53000 * 112.94303 * 303.27126 * 8 7 5 10 10 C 1.52999 * 109.47209 * 304.10138 * 9 8 7 11 11 O 1.42893 * 109.47270 * 175.19040 * 10 9 8 12 12 C 1.53946 * 113.74237 * 171.67520 * 8 7 5 13 13 N 1.47820 * 86.03667 * 222.08406 * 12 8 7 14 14 C 1.36937 * 134.45604 * 204.64548 * 13 12 8 15 15 H 1.08003 * 119.99413 * 179.86904 * 14 13 12 16 16 C 1.38810 * 120.00164 * 359.86489 * 14 13 12 17 17 N 1.31622 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99953 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47533 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47313 * 120.00306 * 18 16 14 21 21 H 1.48504 * 109.47031 * 240.00275 * 18 16 14 22 22 C 1.47588 * 91.05046 * 24.54889 * 13 12 8 23 23 C 1.54476 * 110.24981 * 238.06913 * 2 1 3 24 24 C 1.54637 * 101.76458 * 266.32701 * 23 2 1 25 25 C 1.51284 * 104.19483 * 335.20183 * 24 23 2 26 26 O 1.21278 * 124.94280 * 196.28695 * 25 24 23 27 27 N 1.34427 * 110.11298 * 16.25159 * 25 24 23 28 28 H 1.09002 * 109.46807 * 181.22701 * 1 2 3 29 29 H 1.08995 * 109.47433 * 301.23158 * 1 2 3 30 30 H 1.08995 * 109.46702 * 61.23270 * 1 2 3 31 31 H 1.08996 * 109.47096 * 183.07183 * 3 2 1 32 32 H 1.09001 * 109.46870 * 303.06958 * 3 2 1 33 33 H 1.09002 * 109.47184 * 300.00966 * 4 3 2 34 34 H 1.09001 * 109.46870 * 59.99873 * 4 3 2 35 35 H 0.97002 * 119.99427 * 355.07408 * 7 5 4 36 36 H 1.08991 * 109.47450 * 64.10520 * 9 8 7 37 37 H 1.09005 * 109.46947 * 184.10222 * 9 8 7 38 38 H 1.09005 * 109.47248 * 295.19211 * 10 9 8 39 39 H 1.09002 * 109.47092 * 55.18818 * 10 9 8 40 40 H 0.96706 * 113.99751 * 180.02562 * 11 10 9 41 41 H 1.08998 * 113.76807 * 336.34640 * 12 8 7 42 42 H 1.08998 * 113.76561 * 107.74807 * 12 8 7 43 43 H 0.96995 * 120.00360 * 179.97438 * 17 16 14 44 44 H 1.08993 * 113.76864 * 221.15143 * 22 13 12 45 45 H 1.09001 * 113.86917 * 89.76581 * 22 13 12 46 46 H 1.08994 * 110.97068 * 24.44019 * 23 2 1 47 47 H 1.08994 * 110.97155 * 148.21037 * 23 2 1 48 48 H 1.09003 * 110.48587 * 93.87327 * 24 23 2 49 49 H 1.08993 * 110.48860 * 216.52202 * 24 23 2 50 50 H 0.97000 * 124.34503 * 180.38810 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 6 1.6218 2.1402 1.2860 5 6 2.1421 3.5545 1.2857 6 8 2.7973 3.9594 0.3489 7 7 1.8791 4.3695 2.3264 8 6 2.4736 5.7075 2.3775 9 6 4.0015 5.6846 2.3008 10 6 4.5551 4.7982 3.4182 11 8 5.9728 4.6863 3.2794 12 6 1.9232 6.5873 3.5146 13 7 1.9102 7.6828 2.5222 14 6 1.9632 9.0489 2.6010 15 1 1.9392 9.6431 1.6995 16 6 2.0477 9.6699 3.8396 17 7 2.0774 8.9457 4.9383 18 14 2.1193 11.5334 3.9471 19 1 2.0714 12.1104 2.5796 20 1 0.9619 12.0286 4.7346 21 1 3.3823 11.9426 4.6125 22 6 1.8196 6.7135 1.4130 23 6 2.0647 -0.7665 -1.2300 24 6 2.2648 -2.1874 -0.6535 25 6 2.4539 -1.9624 0.8305 26 8 2.9131 -2.7763 1.6035 27 7 2.0396 -0.7288 1.1675 28 1 -0.3633 -1.0275 0.0220 29 1 -0.3634 0.5328 0.8787 30 1 -0.3632 0.4946 -0.9008 31 1 3.1472 1.4221 -0.0551 32 1 1.6581 1.9705 -0.8612 33 1 0.5333 2.1537 1.3410 34 1 2.0224 1.6055 2.1472 35 1 1.2962 4.0701 3.0416 36 1 4.3109 5.2866 1.3344 37 1 4.3863 6.6978 2.4164 38 1 4.3186 5.2423 4.3852 39 1 4.1044 3.8078 3.3534 40 1 6.3921 4.1368 3.9557 41 1 0.9311 6.2929 3.8569 42 1 2.6282 6.7413 4.3314 43 1 2.1368 9.3795 5.8037 44 1 2.4421 6.9681 0.5552 45 1 0.7977 6.4552 1.1352 46 1 1.3304 -0.7723 -2.0355 47 1 3.0113 -0.3467 -1.5700 48 1 1.3829 -2.8012 -0.8369 49 1 3.1510 -2.6527 -1.0848 50 1 2.0730 -0.3669 2.0669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700498425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:52 Heat of formation + Delta-G solvation = -76.202468 kcal Electronic energy + Delta-G solvation = -30544.857190 eV Core-core repulsion = 26380.476112 eV Total energy + Delta-G solvation = -4164.381078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04839 -40.02317 -38.12874 -37.34115 -36.39623 -33.67389 -33.30366 -31.92447 -31.72903 -30.42872 -29.52242 -27.19990 -26.28668 -25.09693 -24.05551 -23.07570 -21.69204 -21.17380 -20.61760 -19.80132 -18.70196 -17.52370 -17.14637 -16.82832 -16.62595 -16.45861 -15.81092 -15.42002 -15.13520 -14.75525 -14.69666 -14.41863 -14.13747 -13.95128 -13.84792 -13.64443 -13.55990 -13.11948 -12.93728 -12.74004 -12.59215 -12.47325 -11.97569 -11.89722 -11.77581 -11.57419 -11.38256 -11.21396 -11.09517 -10.99096 -10.94609 -10.81168 -10.72210 -10.17367 -10.14535 -10.01657 -9.73708 -9.61059 -9.46756 -9.19374 -8.92658 -8.60631 -6.97140 -5.84631 -3.16530 2.31672 2.82625 3.01791 3.33074 3.37557 3.43013 3.44385 3.89987 4.05928 4.29228 4.42194 4.45725 4.55664 4.56536 4.80156 4.87641 4.93616 5.09095 5.12253 5.18076 5.20942 5.29298 5.36612 5.41454 5.44202 5.49681 5.50965 5.55212 5.67042 5.71486 5.80586 5.82482 5.92014 5.97580 6.29354 6.44078 6.45720 6.51312 6.59442 6.72615 6.74863 6.80620 7.07195 7.26678 7.44256 7.79932 7.87865 7.90286 7.96079 8.49238 8.97490 9.63589 10.49422 11.33077 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002367 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.193676 B =11825.259161 C =12400.957672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 C -0.103 4.103 4 C -0.146 4.146 5 C 0.510 3.490 6 O -0.534 6.534 7 N -0.717 5.717 8 C 0.125 3.875 9 C -0.096 4.096 10 C 0.084 3.916 11 O -0.575 6.575 12 C 0.166 3.834 13 N -0.604 5.604 14 C -0.219 4.219 15 H 0.083 0.917 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.125 3.875 23 C -0.124 4.124 24 C -0.157 4.157 25 C 0.519 3.481 26 O -0.540 6.540 27 N -0.721 5.721 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.372 0.628 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.254 0.746 44 H 0.050 0.950 45 H 0.035 0.965 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -20.892 -8.427 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 C -0.142 4.142 4 C -0.186 4.186 5 C 0.295 3.705 6 O -0.411 6.411 7 N -0.368 5.368 8 C 0.038 3.962 9 C -0.135 4.135 10 C 0.006 3.994 11 O -0.379 6.379 12 C 0.040 3.960 13 N -0.331 5.331 14 C -0.346 4.346 15 H 0.101 0.899 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.002 4.002 23 C -0.161 4.161 24 C -0.197 4.197 25 C 0.306 3.694 26 O -0.417 6.417 27 N -0.377 5.377 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.217 0.783 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.481 -20.346 -9.170 22.455 hybrid contribution -0.498 0.732 1.538 1.774 sum -2.979 -19.614 -7.632 21.257 Atomic orbital electron populations 1.22251 0.93636 1.02622 1.03302 1.21130 0.94244 0.92407 0.85446 1.21662 1.02465 0.92112 0.97962 1.21763 1.02855 0.93912 1.00097 1.20503 0.80338 0.87080 0.82548 1.90692 1.39537 1.76434 1.34425 1.46246 1.50181 1.16436 1.23959 1.22931 0.92741 0.79143 1.01338 1.21331 0.92007 1.01304 0.98816 1.22113 0.80162 0.98044 0.99075 1.86499 1.21120 1.74212 1.56069 1.22585 0.97610 0.83465 0.92380 1.45711 1.85505 1.00682 1.01205 1.19048 1.43469 0.79142 0.92978 0.89941 1.24777 1.02293 0.98156 0.95158 1.69792 1.56607 1.33671 0.96902 0.86019 0.77285 0.84757 0.77552 1.20394 1.21746 1.21625 1.22843 0.96862 0.87709 0.92804 1.22717 1.03102 0.93632 0.96696 1.22363 1.05050 0.98839 0.93436 1.20897 0.76020 0.81487 0.91023 1.90764 1.45471 1.47775 1.57645 1.46470 1.64044 1.15755 1.11423 0.92113 0.91578 0.90759 0.90202 0.89292 0.88694 0.89617 0.76954 0.90234 0.89345 0.93385 0.94779 0.78273 0.95243 0.90057 0.93628 0.93143 0.94732 0.88901 0.89431 0.87895 0.88057 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 8.53 37.16 0.32 -0.45 16 2 C 0.15 0.91 0.87 -130.90 -0.11 0.80 16 3 C -0.10 -0.80 3.71 -26.73 -0.10 -0.90 16 4 C -0.15 -1.18 5.25 -27.89 -0.15 -1.32 16 5 C 0.51 6.63 7.39 -10.99 -0.08 6.55 16 6 O -0.53 -9.03 14.16 5.56 0.08 -8.95 16 7 N -0.72 -9.74 4.52 -49.07 -0.22 -9.96 16 8 C 0.12 2.26 0.68 -134.02 -0.09 2.17 16 9 C -0.10 -1.82 4.67 -26.73 -0.12 -1.95 16 10 C 0.08 1.35 6.86 37.16 0.25 1.60 16 11 O -0.57 -9.18 13.66 -35.23 -0.48 -9.66 16 12 C 0.17 3.61 6.69 -2.83 -0.02 3.59 16 13 N -0.60 -15.06 3.55 -177.47 -0.63 -15.69 16 14 C -0.22 -6.03 10.70 -15.06 -0.16 -6.19 16 15 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -26.39 11.39 55.49 0.63 -25.76 16 18 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.12 2.62 8.04 -2.96 -0.02 2.59 16 23 C -0.12 -0.61 6.21 -25.10 -0.16 -0.77 16 24 C -0.16 -0.94 6.86 -26.74 -0.18 -1.13 16 25 C 0.52 5.03 8.43 -10.86 -0.09 4.94 16 26 O -0.54 -7.69 18.03 5.56 0.10 -7.59 16 27 N -0.72 -5.38 5.36 -46.61 -0.25 -5.63 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 6.52 -51.93 -0.34 -0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 32 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 0.59 6.54 -51.93 -0.34 0.25 16 34 H 0.09 0.57 6.74 -51.93 -0.35 0.22 16 35 H 0.40 4.31 8.67 -40.82 -0.35 3.96 16 36 H 0.08 1.59 6.54 -51.93 -0.34 1.25 16 37 H 0.09 1.95 8.02 -51.93 -0.42 1.54 16 38 H 0.05 0.79 7.61 -51.93 -0.40 0.40 16 39 H 0.03 0.49 7.43 -51.93 -0.39 0.10 16 40 H 0.37 3.97 9.12 45.56 0.42 4.38 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.96 6.59 -51.93 -0.34 1.62 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.30 7.89 -51.93 -0.41 -0.11 16 47 H 0.09 0.45 7.88 -51.93 -0.41 0.04 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.41 2.85 7.51 -40.82 -0.31 2.55 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -36.03 398.23 -7.92 -43.95 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.31 Total: 7.21 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.81 Total: 9.25 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.47 Total: -57.04 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.30 Total: -26.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.03 -7.92 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700498425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.252 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds