Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.21613 * 2 1 4 4 C 1.52999 * 109.47321 * 63.06473 * 3 2 1 5 5 C 1.50697 * 109.47331 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99784 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00254 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00237 * 175.07616 * 7 5 4 9 9 C 1.53000 * 112.94303 * 303.27126 * 8 7 5 10 10 C 1.52999 * 109.47209 * 304.10138 * 9 8 7 11 11 O 1.42893 * 109.47270 * 175.19040 * 10 9 8 12 12 C 1.53946 * 113.74237 * 171.67520 * 8 7 5 13 13 N 1.47820 * 86.03667 * 222.08406 * 12 8 7 14 14 C 1.36937 * 134.45604 * 204.64548 * 13 12 8 15 15 H 1.08003 * 119.99413 * 179.86904 * 14 13 12 16 16 C 1.38810 * 120.00164 * 359.86489 * 14 13 12 17 17 N 1.31622 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99953 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47533 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47313 * 120.00306 * 18 16 14 21 21 H 1.48504 * 109.47031 * 240.00275 * 18 16 14 22 22 C 1.47588 * 91.05046 * 24.54889 * 13 12 8 23 23 C 1.54476 * 110.24981 * 238.06913 * 2 1 3 24 24 C 1.54637 * 101.76458 * 266.32701 * 23 2 1 25 25 C 1.51284 * 104.19483 * 335.20183 * 24 23 2 26 26 O 1.21278 * 124.94280 * 196.28695 * 25 24 23 27 27 N 1.34427 * 110.11298 * 16.25159 * 25 24 23 28 28 H 1.09002 * 109.46807 * 181.22701 * 1 2 3 29 29 H 1.08995 * 109.47433 * 301.23158 * 1 2 3 30 30 H 1.08995 * 109.46702 * 61.23270 * 1 2 3 31 31 H 1.08996 * 109.47096 * 183.07183 * 3 2 1 32 32 H 1.09001 * 109.46870 * 303.06958 * 3 2 1 33 33 H 1.09002 * 109.47184 * 300.00966 * 4 3 2 34 34 H 1.09001 * 109.46870 * 59.99873 * 4 3 2 35 35 H 0.97002 * 119.99427 * 355.07408 * 7 5 4 36 36 H 1.08991 * 109.47450 * 64.10520 * 9 8 7 37 37 H 1.09005 * 109.46947 * 184.10222 * 9 8 7 38 38 H 1.09005 * 109.47248 * 295.19211 * 10 9 8 39 39 H 1.09002 * 109.47092 * 55.18818 * 10 9 8 40 40 H 0.96706 * 113.99751 * 180.02562 * 11 10 9 41 41 H 1.08998 * 113.76807 * 336.34640 * 12 8 7 42 42 H 1.08998 * 113.76561 * 107.74807 * 12 8 7 43 43 H 0.96995 * 120.00360 * 179.97438 * 17 16 14 44 44 H 1.08993 * 113.76864 * 221.15143 * 22 13 12 45 45 H 1.09001 * 113.86917 * 89.76581 * 22 13 12 46 46 H 1.08994 * 110.97068 * 24.44019 * 23 2 1 47 47 H 1.08994 * 110.97155 * 148.21037 * 23 2 1 48 48 H 1.09003 * 110.48587 * 93.87327 * 24 23 2 49 49 H 1.08993 * 110.48860 * 216.52202 * 24 23 2 50 50 H 0.97000 * 124.34503 * 180.38810 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 6 1.6218 2.1402 1.2860 5 6 2.1421 3.5545 1.2857 6 8 2.7973 3.9594 0.3489 7 7 1.8791 4.3695 2.3264 8 6 2.4736 5.7075 2.3775 9 6 4.0015 5.6846 2.3008 10 6 4.5551 4.7982 3.4182 11 8 5.9728 4.6863 3.2794 12 6 1.9232 6.5873 3.5146 13 7 1.9102 7.6828 2.5222 14 6 1.9632 9.0489 2.6010 15 1 1.9392 9.6431 1.6995 16 6 2.0477 9.6699 3.8396 17 7 2.0774 8.9457 4.9383 18 14 2.1193 11.5334 3.9471 19 1 2.0714 12.1104 2.5796 20 1 0.9619 12.0286 4.7346 21 1 3.3823 11.9426 4.6125 22 6 1.8196 6.7135 1.4130 23 6 2.0647 -0.7665 -1.2300 24 6 2.2648 -2.1874 -0.6535 25 6 2.4539 -1.9624 0.8305 26 8 2.9131 -2.7763 1.6035 27 7 2.0396 -0.7288 1.1675 28 1 -0.3633 -1.0275 0.0220 29 1 -0.3634 0.5328 0.8787 30 1 -0.3632 0.4946 -0.9008 31 1 3.1472 1.4221 -0.0551 32 1 1.6581 1.9705 -0.8612 33 1 0.5333 2.1537 1.3410 34 1 2.0224 1.6055 2.1472 35 1 1.2962 4.0701 3.0416 36 1 4.3109 5.2866 1.3344 37 1 4.3863 6.6978 2.4164 38 1 4.3186 5.2423 4.3852 39 1 4.1044 3.8078 3.3534 40 1 6.3921 4.1368 3.9557 41 1 0.9311 6.2929 3.8569 42 1 2.6282 6.7413 4.3314 43 1 2.1368 9.3795 5.8037 44 1 2.4421 6.9681 0.5552 45 1 0.7977 6.4552 1.1352 46 1 1.3304 -0.7723 -2.0355 47 1 3.0113 -0.3467 -1.5700 48 1 1.3829 -2.8012 -0.8369 49 1 3.1510 -2.6527 -1.0848 50 1 2.0730 -0.3669 2.0669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700498425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -105.835701 kcal Electronic energy + Delta-G solvation = -30546.142184 eV Core-core repulsion = 26380.476112 eV Total energy + Delta-G solvation = -4165.666071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74561 -41.30352 -39.43875 -38.19753 -37.73150 -35.22590 -34.12996 -33.60497 -32.26388 -31.89419 -30.16710 -28.99623 -26.93757 -26.83921 -25.24412 -24.18896 -23.26197 -21.83208 -21.53291 -20.62341 -20.15646 -18.78650 -18.43448 -18.33615 -17.60491 -17.08939 -17.02835 -16.71345 -16.50475 -15.99491 -15.83232 -15.62842 -15.25285 -15.16147 -14.93929 -14.57154 -14.50258 -14.38658 -13.71103 -13.64734 -13.42704 -13.34582 -13.19561 -13.17032 -13.02903 -12.85892 -12.80525 -12.60065 -12.48034 -12.26531 -12.01235 -11.92799 -11.75934 -11.73774 -11.48779 -11.43537 -11.00866 -10.90725 -10.89625 -10.52619 -10.10224 -9.96585 -8.96538 -7.94492 -5.27022 1.44978 1.46103 1.55909 1.61131 1.77724 2.19128 2.44055 2.49830 3.13673 3.25903 3.36459 3.39719 3.55972 3.63879 3.78118 3.92239 4.05870 4.10622 4.19157 4.26014 4.32163 4.35624 4.38344 4.46303 4.63169 4.64285 4.71859 4.72896 4.80960 4.85670 4.97145 5.01824 5.04079 5.04642 5.13670 5.18243 5.18304 5.20437 5.22529 5.30083 5.47392 5.48637 5.75558 5.89124 5.93661 6.09169 6.72461 6.86940 6.89630 7.28766 7.42584 7.56037 8.49249 9.22561 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002367 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.193676 B =11825.259161 C =12400.957672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.099 4.099 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.573 6.573 7 N -0.709 5.709 8 C 0.157 3.843 9 C -0.090 4.090 10 C 0.093 3.907 11 O -0.593 6.593 12 C 0.171 3.829 13 N -0.633 5.633 14 C -0.234 4.234 15 H 0.079 0.921 16 C -0.060 4.060 17 N -0.947 5.947 18 Si 0.977 3.023 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.292 1.292 22 C 0.123 3.877 23 C -0.120 4.120 24 C -0.151 4.151 25 C 0.509 3.491 26 O -0.595 6.595 27 N -0.714 5.714 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.251 0.749 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.121 0.879 49 H 0.105 0.895 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -22.356 -9.187 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.073 3.927 3 C -0.138 4.138 4 C -0.175 4.175 5 C 0.297 3.703 6 O -0.452 6.452 7 N -0.362 5.362 8 C 0.069 3.931 9 C -0.129 4.129 10 C 0.016 3.984 11 O -0.401 6.401 12 C 0.045 3.955 13 N -0.360 5.360 14 C -0.362 4.362 15 H 0.097 0.903 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.805 3.195 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.219 1.219 22 C -0.003 4.003 23 C -0.157 4.157 24 C -0.190 4.190 25 C 0.297 3.703 26 O -0.477 6.477 27 N -0.368 5.368 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.136 0.864 47 H 0.102 0.898 48 H 0.139 0.861 49 H 0.123 0.877 50 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.859 -21.833 -9.941 24.298 hybrid contribution -0.052 1.181 1.710 2.078 sum -3.911 -20.652 -8.232 22.574 Atomic orbital electron populations 1.22259 0.92094 1.03179 1.04156 1.21190 0.95197 0.91045 0.85219 1.21602 1.01280 0.93153 0.97728 1.21796 1.04483 0.90091 1.01157 1.21357 0.79239 0.88523 0.81204 1.90692 1.41215 1.77456 1.35850 1.46026 1.50416 1.14558 1.25175 1.22118 0.92102 0.81025 0.97853 1.21185 0.92613 0.99565 0.99512 1.21947 0.80632 0.98530 0.97336 1.86440 1.20951 1.75188 1.57523 1.22469 0.97340 0.83566 0.92139 1.46000 1.85765 1.00734 1.03501 1.19338 1.42943 0.80867 0.93060 0.90298 1.25541 1.02634 1.02253 0.94924 1.69942 1.57661 1.34987 0.97010 0.85041 0.76829 0.79917 0.77721 1.19380 1.21564 1.21889 1.22948 0.97439 0.87822 0.92138 1.22781 1.03713 0.92420 0.96834 1.22394 1.06062 0.99899 0.90692 1.21531 0.75092 0.81413 0.92278 1.90730 1.48083 1.49509 1.59337 1.46556 1.62971 1.15272 1.12051 0.91733 0.91204 0.89497 0.92193 0.89432 0.85807 0.87570 0.74855 0.91296 0.93419 0.93836 0.92132 0.75469 0.94593 0.92716 0.94041 0.94427 0.93516 0.86428 0.89793 0.86066 0.87711 0.75128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.53 71.98 0.61 -0.30 16 2 C 0.16 1.41 0.87 4.06 0.00 1.41 16 3 C -0.10 -1.27 3.71 30.60 0.11 -1.16 16 4 C -0.14 -1.73 5.25 29.85 0.16 -1.58 16 5 C 0.51 12.14 7.39 87.66 0.65 12.79 16 6 O -0.57 -18.79 14.16 -3.04 -0.04 -18.84 16 7 N -0.71 -17.89 4.52 -427.54 -1.93 -19.82 16 8 C 0.16 5.67 0.68 5.36 0.00 5.67 16 9 C -0.09 -3.47 4.67 30.59 0.14 -3.33 16 10 C 0.09 2.94 6.86 71.98 0.49 3.43 16 11 O -0.59 -18.42 13.66 -148.98 -2.03 -20.46 16 12 C 0.17 7.51 6.69 86.44 0.58 8.08 16 13 N -0.63 -32.20 3.55 -715.39 -2.54 -34.73 16 14 C -0.23 -13.14 10.70 84.03 0.90 -12.24 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 17 N -0.95 -55.20 11.39 21.65 0.25 -54.95 16 18 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 C 0.12 5.20 8.04 86.49 0.70 5.89 16 23 C -0.12 -0.83 6.21 31.65 0.20 -0.64 16 24 C -0.15 -1.48 6.86 30.59 0.21 -1.27 16 25 C 0.51 9.23 8.43 87.90 0.74 9.97 16 26 O -0.60 -16.99 18.03 -3.02 -0.05 -17.04 16 27 N -0.71 -9.13 5.36 -419.97 -2.25 -11.38 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.37 6.52 -2.39 -0.02 0.35 16 30 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16 32 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.12 0.97 6.54 -2.39 -0.02 0.96 16 34 H 0.11 1.00 6.74 -2.39 -0.02 0.99 16 35 H 0.41 7.80 8.67 -92.71 -0.80 7.00 16 36 H 0.07 2.81 6.54 -2.39 -0.02 2.79 16 37 H 0.05 2.20 8.02 -2.38 -0.02 2.19 16 38 H 0.04 1.42 7.61 -2.38 -0.02 1.40 16 39 H 0.06 1.59 7.43 -2.39 -0.02 1.57 16 40 H 0.40 7.79 9.12 -74.05 -0.68 7.12 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 2.71 6.59 -2.39 -0.02 2.69 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.12 0.29 7.89 -2.39 -0.02 0.27 16 47 H 0.08 0.68 7.88 -2.39 -0.02 0.66 16 48 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.41 4.80 7.51 -92.71 -0.70 4.10 16 Total: -1.00 -81.41 398.23 -1.81 -83.23 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -1.19 Total: 22.61 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 5.96 Total: 23.84 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -6.48 Total: -120.88 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -2.13 Total: -56.33 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -81.41 -1.81 -83.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700498425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.608 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds