Wall clock time and date at job start Sat Apr 11 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48505 * 109.46963 * 239.99879 * 3 2 1 5 5 H 1.48501 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47219 * 120.00034 * 3 2 1 7 7 C 1.38948 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00221 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99785 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99801 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47096 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00179 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.90710 * 336.25442 * 14 13 12 16 16 C 1.53779 * 113.61379 * 107.50646 * 14 13 12 17 17 C 1.53779 * 87.08402 * 139.98305 * 16 14 13 18 18 H 1.09000 * 113.61527 * 89.11480 * 17 16 14 19 19 C 1.53005 * 113.69064 * 220.00975 * 17 16 14 20 20 N 1.46499 * 109.46872 * 272.52979 * 19 17 16 21 21 C 1.34777 * 119.99733 * 179.97438 * 20 19 17 22 22 O 1.21287 * 120.00184 * 0.02562 * 21 20 19 23 23 C 1.50696 * 119.99915 * 180.02562 * 21 20 19 24 24 H 1.09002 * 109.52380 * 299.87620 * 23 21 20 25 25 C 1.53183 * 109.52308 * 179.68684 * 23 21 20 26 26 C 1.53172 * 109.03573 * 183.11269 * 25 23 21 27 27 C 1.53094 * 109.16345 * 56.98335 * 26 25 23 28 28 O 1.42903 * 109.41322 * 302.38962 * 27 26 25 29 29 C 1.42899 * 114.09879 * 61.15640 * 28 27 26 30 30 C 1.53784 * 113.61464 * 205.00274 * 14 13 12 31 31 H 0.97004 * 119.99999 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99441 * 359.97438 * 9 7 2 33 33 H 1.09006 * 109.47269 * 59.99697 * 12 10 9 34 34 H 1.08997 * 109.47149 * 299.99571 * 12 10 9 35 35 H 1.00904 * 110.99618 * 56.04470 * 13 12 10 36 36 H 1.09006 * 113.61307 * 25.43507 * 16 14 13 37 37 H 1.09007 * 113.61642 * 254.53265 * 16 14 13 38 38 H 1.08995 * 109.46809 * 32.53527 * 19 17 16 39 39 H 1.09006 * 109.46737 * 152.53023 * 19 17 16 40 40 H 0.96993 * 120.00253 * 0.02562 * 20 19 17 41 41 H 1.08994 * 109.54243 * 302.98486 * 25 23 21 42 42 H 1.09007 * 109.53664 * 63.24655 * 25 23 21 43 43 H 1.08999 * 109.52619 * 297.07222 * 26 25 23 44 44 H 1.08999 * 109.57394 * 176.92029 * 26 25 23 45 45 H 1.08997 * 109.47575 * 182.40685 * 27 26 25 46 46 H 1.08992 * 109.47929 * 62.37113 * 27 26 25 47 47 H 1.09000 * 109.48247 * 178.85836 * 29 28 27 48 48 H 1.08999 * 109.48704 * 58.82936 * 29 28 27 49 49 H 1.09004 * 113.61451 * 105.47386 * 30 14 13 50 50 H 1.08994 * 113.61477 * 334.56688 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4980 -7.2708 0.0039 15 1 0.4880 -7.2054 0.4085 16 6 1.5765 -8.0154 -1.3394 17 6 1.7623 -9.3057 -0.5237 18 1 0.8245 -9.7966 -0.2634 19 6 2.7907 -10.2681 -1.1214 20 7 2.1322 -11.1445 -2.0933 21 6 2.8471 -12.0791 -2.7505 22 8 4.0354 -12.1949 -2.5371 23 6 2.1699 -12.9803 -3.7507 24 1 1.3866 -13.5525 -3.2536 25 6 3.2001 -13.9388 -4.3560 26 6 2.5169 -14.7959 -5.4259 27 6 1.8879 -13.8790 -6.4782 28 8 0.9631 -12.9929 -5.8444 29 6 1.5543 -12.1335 -4.8677 30 6 2.3271 -8.4207 0.6000 31 1 -0.4850 0.8401 0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.6173 -4.9212 -0.8880 34 1 0.6168 -4.9201 0.8920 35 1 2.8332 -5.9121 0.7840 36 1 2.4478 -7.7473 -1.9369 37 1 0.6472 -7.9885 -1.9085 38 1 3.5753 -9.6982 -1.6191 39 1 3.2287 -10.8715 -0.3262 40 1 1.1820 -11.0517 -2.2643 41 1 4.0089 -13.3658 -4.8093 42 1 3.6018 -14.5833 -3.5740 43 1 1.7408 -15.4057 -4.9634 44 1 3.2541 -15.4433 -5.9007 45 1 1.3637 -14.4823 -7.2193 46 1 2.6695 -13.2987 -6.9685 47 1 0.7897 -11.4794 -4.4486 48 1 2.3315 -11.5303 -5.3369 49 1 2.0037 -8.7211 1.5966 50 1 3.4035 -8.2634 0.5326 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707062628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:58 Heat of formation + Delta-G solvation = -138.740727 kcal Electronic energy + Delta-G solvation = -28496.437886 eV Core-core repulsion = 24329.344945 eV Total energy + Delta-G solvation = -4167.092940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43529 -40.50205 -39.88011 -39.35381 -36.26086 -35.82830 -34.64906 -34.46041 -33.24511 -32.42436 -29.32360 -27.84832 -26.60882 -26.04584 -25.78271 -25.07606 -22.56116 -22.02053 -21.20119 -20.97841 -20.25359 -19.85982 -18.40313 -17.79757 -17.36399 -17.30338 -16.88616 -16.80296 -16.40627 -16.31351 -16.20105 -15.83709 -15.60812 -15.34562 -15.14170 -14.99954 -14.63860 -14.44238 -14.08152 -13.89347 -13.58601 -13.50815 -13.41177 -13.29058 -13.00744 -12.77275 -12.60243 -12.45176 -12.40604 -12.15966 -12.13007 -11.91602 -11.80650 -11.64330 -11.50796 -11.37443 -11.15012 -10.89921 -10.50982 -10.32601 -10.09662 -10.02148 -9.28298 -8.47005 -5.95948 1.39574 1.41538 1.52449 1.54219 2.05156 2.13061 2.29288 2.87234 2.98136 3.20270 3.47998 3.54539 3.62759 3.68307 3.76182 3.83926 3.92969 3.97033 4.00478 4.14213 4.24065 4.28226 4.37300 4.42882 4.45825 4.49833 4.60353 4.60803 4.70677 4.74496 4.79294 4.86383 4.91233 4.92974 4.98517 5.03708 5.09924 5.14358 5.27647 5.30730 5.38821 5.40549 5.54166 5.94343 6.14129 6.20895 6.44328 6.51568 6.60127 7.12154 7.20447 7.55919 8.11577 8.70038 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.001526 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.563126 B =18339.969392 C =18939.125693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.066 3.934 13 N -0.674 5.674 14 C 0.052 3.948 15 H 0.089 0.911 16 C -0.121 4.121 17 C -0.101 4.101 18 H 0.124 0.876 19 C 0.134 3.866 20 N -0.712 5.712 21 C 0.515 3.485 22 O -0.584 6.584 23 C -0.135 4.135 24 H 0.126 0.874 25 C -0.105 4.105 26 C -0.149 4.149 27 C 0.049 3.951 28 O -0.390 6.390 29 C 0.072 3.928 30 C -0.129 4.129 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.343 0.657 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.417 0.583 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.051 0.949 47 H 0.118 0.882 48 H 0.048 0.952 49 H 0.086 0.914 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -30.468 -7.046 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.066 4.066 13 N -0.306 5.306 14 C -0.058 4.058 15 H 0.107 0.893 16 C -0.160 4.160 17 C -0.120 4.120 18 H 0.142 0.858 19 C 0.010 3.990 20 N -0.365 5.365 21 C 0.302 3.698 22 O -0.464 6.464 23 C -0.156 4.156 24 H 0.143 0.857 25 C -0.143 4.143 26 C -0.186 4.186 27 C -0.027 4.027 28 O -0.308 6.308 29 C -0.005 4.005 30 C -0.168 4.168 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.254 0.746 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.130 0.870 46 H 0.070 0.930 47 H 0.136 0.864 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.368 -30.349 -7.606 31.468 hybrid contribution -0.146 1.200 0.990 1.563 sum -3.514 -29.149 -6.616 30.096 Atomic orbital electron populations 1.69659 1.06779 1.29379 1.50145 1.26024 0.96557 1.02354 0.96186 0.84994 0.77778 0.76681 0.78903 1.19863 1.19350 1.19697 1.19640 0.92709 0.84152 1.50206 0.90442 1.41931 1.09326 1.04704 1.65024 1.20978 0.88282 0.86300 0.82144 1.90489 1.16001 1.88012 1.56736 1.21585 0.94079 0.88074 1.02882 1.60264 1.18709 1.00764 1.50887 1.23207 0.97412 0.86719 0.98439 0.89281 1.23154 1.02368 0.94223 0.96241 1.22541 0.99404 0.93460 0.96618 0.85803 1.21274 0.95184 0.91436 0.91105 1.45958 1.13536 1.34876 1.42086 1.20887 0.86713 0.80740 0.81437 1.90708 1.17407 1.71304 1.66985 1.22006 1.00211 0.97436 0.95977 0.85659 1.21408 0.96773 0.97401 0.98751 1.22188 1.01138 0.98471 0.96825 1.22832 0.93190 0.91775 0.94884 1.87955 1.35865 1.52283 1.54739 1.22561 0.98684 0.91301 0.87942 1.23167 1.00224 0.94615 0.98766 0.91257 0.76934 0.88039 0.91446 0.83726 0.91374 0.90238 0.93232 0.91895 0.74596 0.92613 0.91444 0.90166 0.89139 0.86952 0.93035 0.86417 0.93397 0.89563 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 3 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.53 5.29 -306.98 -1.62 -31.16 16 10 C 0.44 20.85 7.82 87.66 0.69 21.54 16 11 O -0.63 -35.21 15.78 -3.06 -0.05 -35.26 16 12 C 0.07 2.23 6.01 85.56 0.51 2.74 16 13 N -0.67 -20.69 6.18 -492.85 -3.05 -23.74 16 14 C 0.05 1.06 4.14 45.44 0.19 1.25 16 15 H 0.09 1.57 7.87 -2.39 -0.02 1.55 16 16 C -0.12 -2.19 7.43 31.12 0.23 -1.96 16 17 C -0.10 -1.31 3.75 -10.26 -0.04 -1.35 16 18 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 19 C 0.13 2.18 5.51 86.38 0.48 2.66 16 20 N -0.71 -9.37 5.46 -463.05 -2.53 -11.89 16 21 C 0.52 9.27 7.16 87.66 0.63 9.90 16 22 O -0.58 -16.15 15.97 -3.05 -0.05 -16.20 16 23 C -0.13 -1.66 2.73 -11.45 -0.03 -1.70 16 24 H 0.13 1.08 8.14 -2.39 -0.02 1.07 16 25 C -0.11 -1.45 4.62 30.71 0.14 -1.31 16 26 C -0.15 -1.35 6.14 30.68 0.19 -1.16 16 27 C 0.05 0.50 6.84 72.01 0.49 0.99 16 28 O -0.39 -5.36 10.77 -148.98 -1.60 -6.96 16 29 C 0.07 0.84 6.00 72.01 0.43 1.27 16 30 C -0.13 -2.16 7.21 31.12 0.22 -1.93 16 31 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 33 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.34 11.24 8.24 -89.69 -0.74 10.50 16 36 H 0.07 1.60 7.90 -2.38 -0.02 1.59 16 37 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.05 1.07 7.85 -2.39 -0.02 1.05 16 39 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.42 2.79 7.94 -92.71 -0.74 2.05 16 41 H 0.06 0.96 8.03 -2.39 -0.02 0.94 16 42 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.12 0.88 7.64 -2.39 -0.02 0.86 16 48 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -75.65 406.69 -2.42 -78.07 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -1.24 Total: 38.96 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.41 Total: 12.28 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -6.92 Total: -115.99 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.70 Total: -58.42 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -75.65 -2.42 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707062628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.668 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds