Wall clock time and date at job start Sat Apr 11 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48495 * 109.46777 * 269.99847 * 3 2 1 5 5 H 1.48495 * 109.47087 * 29.99543 * 3 2 1 6 6 H 1.48496 * 109.47120 * 149.99715 * 3 2 1 7 7 C 1.38955 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99610 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99361 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00380 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99888 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.47962 * 111.00289 * 190.00102 * 13 12 10 15 15 C 1.53933 * 86.18080 * 222.41859 * 14 13 12 16 16 C 1.53004 * 113.73420 * 138.07747 * 15 14 13 17 17 N 1.46499 * 109.47198 * 176.89862 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 16 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 16 21 21 C 1.52999 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47303 * 179.97438 * 21 20 18 23 23 H 1.08996 * 110.80466 * 308.62797 * 22 21 20 24 24 C 1.54815 * 110.91063 * 185.00000 * 22 21 20 25 25 C 1.54096 * 104.19053 * 220.92640 * 24 22 21 26 26 O 1.43745 * 107.29424 * 357.96701 * 25 24 22 27 27 C 1.44384 * 106.97267 * 26.51640 * 26 25 24 28 28 C 1.48192 * 111.07327 * 90.56674 * 13 12 10 29 29 H 0.97000 * 120.00374 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00489 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47063 * 60.00130 * 12 10 9 32 32 H 1.08995 * 109.47309 * 300.00069 * 12 10 9 33 33 H 1.09005 * 113.75872 * 108.10021 * 14 13 12 34 34 H 1.09004 * 113.75612 * 336.73775 * 14 13 12 35 35 H 1.09000 * 113.73452 * 269.24928 * 15 14 13 36 36 H 1.09009 * 109.46730 * 56.89649 * 16 15 14 37 37 H 1.08998 * 109.46846 * 296.90194 * 16 15 14 38 38 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 39 39 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 40 40 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 41 41 H 1.09000 * 109.47527 * 299.99994 * 21 20 18 42 42 H 1.09007 * 109.47302 * 59.99534 * 21 20 18 43 43 H 1.09005 * 110.48405 * 339.59845 * 24 22 21 44 44 H 1.08999 * 110.48760 * 102.11323 * 24 22 21 45 45 H 1.08997 * 109.88288 * 117.39107 * 25 24 22 46 46 H 1.08999 * 109.87829 * 238.54716 * 25 24 22 47 47 H 1.09003 * 110.61839 * 201.43704 * 27 26 25 48 48 H 1.09000 * 110.61858 * 78.44286 * 27 26 25 49 49 H 1.08999 * 113.75243 * 23.23952 * 28 13 12 50 50 H 1.08994 * 113.82797 * 251.81713 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.5092 -7.2667 -0.2366 15 6 2.4122 -7.8384 0.8711 16 6 1.6843 -8.7761 1.8364 17 7 2.6412 -9.3215 2.8023 18 6 2.2238 -10.1818 3.7521 19 8 1.0550 -10.5006 3.8102 20 6 3.2093 -10.7476 4.7418 21 6 2.4822 -11.6892 5.7040 22 6 3.4828 -12.2641 6.7085 23 1 4.3453 -12.6896 6.1955 24 6 2.8073 -13.3174 7.6201 25 6 3.3847 -13.0315 9.0199 26 8 4.3287 -11.9563 8.8813 27 6 3.9228 -11.1849 7.7303 28 6 2.5343 -6.3927 1.3856 29 1 -0.4851 0.8400 0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6169 -4.9210 -0.8876 32 1 0.6176 -4.9206 0.8924 33 1 1.7009 -7.6909 -1.2222 34 1 0.4506 -7.2528 0.0232 35 1 3.3501 -8.2534 0.5020 36 1 1.2287 -9.5924 1.2756 37 1 0.9092 -8.2221 2.3659 38 1 3.5760 -9.0668 2.7556 39 1 3.9835 -11.2994 4.2087 40 1 3.6657 -9.9342 5.3057 41 1 1.7081 -11.1372 6.2371 42 1 2.0254 -12.5028 5.1404 43 1 1.7254 -13.1849 7.6194 44 1 3.0675 -14.3252 7.2964 45 1 2.5840 -12.7366 9.6980 46 1 3.8882 -13.9197 9.4016 47 1 4.7607 -10.6066 7.3409 48 1 3.0877 -10.5310 7.9815 49 1 1.7763 -6.1228 2.1208 50 1 3.5436 -6.1200 1.6939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713894496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:53 Heat of formation + Delta-G solvation = -96.334949 kcal Electronic energy + Delta-G solvation = -28238.801024 eV Core-core repulsion = 24073.546936 eV Total energy + Delta-G solvation = -4165.254088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.46568 -39.98738 -39.40701 -37.74293 -35.19176 -34.76662 -33.87439 -31.65413 -31.27097 -30.71837 -29.14960 -27.37429 -26.09158 -25.17472 -24.41681 -22.91668 -22.35020 -20.93989 -20.69136 -19.60819 -19.17748 -17.88883 -17.36538 -16.99929 -16.50059 -16.29364 -16.11193 -15.95093 -15.51327 -15.25158 -14.96395 -14.91236 -14.45572 -14.31038 -13.88885 -13.71934 -13.61223 -13.40900 -13.17431 -12.91370 -12.62946 -12.57288 -12.23112 -12.01457 -11.83431 -11.62704 -11.53345 -11.46196 -11.32914 -11.18209 -11.06550 -10.96115 -10.72994 -10.69053 -10.39045 -10.20755 -10.12120 -10.06801 -9.49099 -9.33193 -8.73799 -8.17376 -7.94968 -6.40625 -3.81417 2.37753 2.86442 3.18294 3.26666 3.32446 3.49095 3.87412 3.93655 4.00346 4.18910 4.22651 4.29800 4.38903 4.46630 4.56483 4.58442 4.71488 4.80478 4.86896 4.95138 5.03390 5.08307 5.16467 5.20686 5.23584 5.29903 5.32451 5.33638 5.36751 5.45491 5.47996 5.50563 5.52249 5.67222 5.68452 5.70100 5.74688 5.84377 5.91685 6.07773 6.23747 6.28014 6.40924 6.56233 7.14737 7.21959 7.55949 7.95153 8.07201 8.63420 9.19553 9.56010 10.08442 10.77252 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.001544 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.463673 B =18134.744037 C =19215.596650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.010 3.990 13 N -0.450 5.450 14 C 0.009 3.991 15 C -0.131 4.131 16 C 0.127 3.873 17 N -0.728 5.728 18 C 0.510 3.490 19 O -0.543 6.543 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.123 4.123 23 H 0.087 0.913 24 C -0.153 4.153 25 C 0.046 3.954 26 O -0.380 6.380 27 C 0.048 3.952 28 C 0.016 3.984 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.403 0.597 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -26.798 11.601 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.460 6.460 12 C -0.122 4.122 13 N -0.172 5.172 14 C -0.121 4.121 15 C -0.150 4.150 16 C 0.003 3.997 17 N -0.380 5.380 18 C 0.297 3.703 19 O -0.421 6.421 20 C -0.183 4.183 21 C -0.131 4.131 22 C -0.142 4.142 23 H 0.106 0.894 24 C -0.191 4.191 25 C -0.031 4.031 26 O -0.299 6.299 27 C -0.029 4.029 28 C -0.113 4.113 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.773 -26.561 11.327 29.121 hybrid contribution -0.766 0.911 0.248 1.216 sum 3.007 -25.650 11.575 28.301 Atomic orbital electron populations 1.69612 1.05925 1.28103 1.50804 1.25253 0.95630 0.99678 0.97411 0.85858 0.79201 0.80842 0.78389 1.20405 1.20954 1.19464 1.19697 0.93345 0.82255 1.47526 0.87973 1.41879 1.09134 1.04603 1.64819 1.19691 0.88391 0.84411 0.84386 1.90515 1.13675 1.86998 1.54773 1.22479 0.94741 0.93062 1.01930 1.68406 1.30214 1.00243 1.18306 1.23950 0.96996 0.91724 0.99422 1.23287 1.00424 0.94987 0.96304 1.21436 0.91698 0.96734 0.89785 1.46052 1.12791 1.46978 1.32201 1.20714 0.89527 0.78560 0.81503 1.90716 1.18660 1.59772 1.72903 1.21728 0.98537 1.00872 0.97183 1.21306 0.97075 0.98890 0.95856 1.22806 0.99037 0.95963 0.96375 0.89421 1.23002 1.01360 0.99998 0.94727 1.23159 0.92521 0.90729 0.96703 1.88880 1.50733 1.41761 1.48561 1.23722 1.00372 0.93903 0.84902 1.24071 1.03117 0.92441 0.91671 0.91915 0.77561 0.89395 0.92460 0.89027 0.91114 0.87639 0.91168 0.91284 0.76271 0.88668 0.88696 0.90725 0.90625 0.90269 0.90368 0.92361 0.89931 0.88832 0.91845 0.91315 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 10 C 0.45 10.68 7.83 -10.98 -0.09 10.59 16 11 O -0.58 -15.92 16.01 5.55 0.09 -15.83 16 12 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 13 N -0.45 -7.19 5.65 -239.52 -1.35 -8.55 16 14 C 0.01 0.10 7.52 -2.76 -0.02 0.08 16 15 C -0.13 -1.28 3.93 -89.69 -0.35 -1.64 16 16 C 0.13 1.17 5.51 -4.04 -0.02 1.15 16 17 N -0.73 -5.76 5.56 -60.29 -0.33 -6.09 16 18 C 0.51 4.67 7.83 -10.99 -0.09 4.59 16 19 O -0.54 -7.22 15.98 5.55 0.09 -7.13 16 20 C -0.14 -0.80 5.60 -27.88 -0.16 -0.95 16 21 C -0.09 -0.58 3.90 -26.73 -0.10 -0.68 16 22 C -0.12 -0.66 3.10 -88.61 -0.27 -0.93 16 23 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 24 C -0.15 -0.79 6.60 -25.20 -0.17 -0.96 16 25 C 0.05 0.28 7.70 37.73 0.29 0.57 16 26 O -0.38 -3.32 11.52 -35.23 -0.41 -3.72 16 27 C 0.05 0.30 6.63 38.21 0.25 0.56 16 28 C 0.02 0.21 7.53 -2.63 -0.02 0.19 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 31 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 32 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 38 H 0.40 2.25 8.47 -40.82 -0.35 1.91 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.40 7.73 -51.93 -0.40 0.00 16 41 H 0.07 0.56 7.94 -51.93 -0.41 0.14 16 42 H 0.08 0.54 8.10 -51.93 -0.42 0.11 16 43 H 0.08 0.40 7.86 -51.93 -0.41 -0.01 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 49 H 0.07 0.90 7.26 -51.93 -0.38 0.53 16 50 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -35.47 409.34 -9.57 -45.05 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.46 Total: 7.88 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.01 Total: 4.65 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -1.02 Total: -53.19 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.23 Total: -26.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.47 -9.57 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713894496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.289 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds