Wall clock time and date at job start Sat Apr 11 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48495 * 109.46777 * 269.99847 * 3 2 1 5 5 H 1.48495 * 109.47087 * 29.99543 * 3 2 1 6 6 H 1.48496 * 109.47120 * 149.99715 * 3 2 1 7 7 C 1.38955 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99610 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99361 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00380 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99888 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.47962 * 111.00289 * 190.00102 * 13 12 10 15 15 C 1.53933 * 86.18080 * 222.41859 * 14 13 12 16 16 C 1.53004 * 113.73420 * 138.07747 * 15 14 13 17 17 N 1.46499 * 109.47198 * 176.89862 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 16 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 16 21 21 C 1.52999 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47303 * 179.97438 * 21 20 18 23 23 H 1.08996 * 110.80466 * 308.62797 * 22 21 20 24 24 C 1.54815 * 110.91063 * 185.00000 * 22 21 20 25 25 C 1.54096 * 104.19053 * 220.92640 * 24 22 21 26 26 O 1.43745 * 107.29424 * 357.96701 * 25 24 22 27 27 C 1.44384 * 106.97267 * 26.51640 * 26 25 24 28 28 C 1.48192 * 111.07327 * 90.56674 * 13 12 10 29 29 H 0.97000 * 120.00374 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00489 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47063 * 60.00130 * 12 10 9 32 32 H 1.08995 * 109.47309 * 300.00069 * 12 10 9 33 33 H 1.09005 * 113.75872 * 108.10021 * 14 13 12 34 34 H 1.09004 * 113.75612 * 336.73775 * 14 13 12 35 35 H 1.09000 * 113.73452 * 269.24928 * 15 14 13 36 36 H 1.09009 * 109.46730 * 56.89649 * 16 15 14 37 37 H 1.08998 * 109.46846 * 296.90194 * 16 15 14 38 38 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 39 39 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 40 40 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 41 41 H 1.09000 * 109.47527 * 299.99994 * 21 20 18 42 42 H 1.09007 * 109.47302 * 59.99534 * 21 20 18 43 43 H 1.09005 * 110.48405 * 339.59845 * 24 22 21 44 44 H 1.08999 * 110.48760 * 102.11323 * 24 22 21 45 45 H 1.08997 * 109.88288 * 117.39107 * 25 24 22 46 46 H 1.08999 * 109.87829 * 238.54716 * 25 24 22 47 47 H 1.09003 * 110.61839 * 201.43704 * 27 26 25 48 48 H 1.09000 * 110.61858 * 78.44286 * 27 26 25 49 49 H 1.08999 * 113.75243 * 23.23952 * 28 13 12 50 50 H 1.08994 * 113.82797 * 251.81713 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.5092 -7.2667 -0.2366 15 6 2.4122 -7.8384 0.8711 16 6 1.6843 -8.7761 1.8364 17 7 2.6412 -9.3215 2.8023 18 6 2.2238 -10.1818 3.7521 19 8 1.0550 -10.5006 3.8102 20 6 3.2093 -10.7476 4.7418 21 6 2.4822 -11.6892 5.7040 22 6 3.4828 -12.2641 6.7085 23 1 4.3453 -12.6896 6.1955 24 6 2.8073 -13.3174 7.6201 25 6 3.3847 -13.0315 9.0199 26 8 4.3287 -11.9563 8.8813 27 6 3.9228 -11.1849 7.7303 28 6 2.5343 -6.3927 1.3856 29 1 -0.4851 0.8400 0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6169 -4.9210 -0.8876 32 1 0.6176 -4.9206 0.8924 33 1 1.7009 -7.6909 -1.2222 34 1 0.4506 -7.2528 0.0232 35 1 3.3501 -8.2534 0.5020 36 1 1.2287 -9.5924 1.2756 37 1 0.9092 -8.2221 2.3659 38 1 3.5760 -9.0668 2.7556 39 1 3.9835 -11.2994 4.2087 40 1 3.6657 -9.9342 5.3057 41 1 1.7081 -11.1372 6.2371 42 1 2.0254 -12.5028 5.1404 43 1 1.7254 -13.1849 7.6194 44 1 3.0675 -14.3252 7.2964 45 1 2.5840 -12.7366 9.6980 46 1 3.8882 -13.9197 9.4016 47 1 4.7607 -10.6066 7.3409 48 1 3.0877 -10.5310 7.9815 49 1 1.7763 -6.1228 2.1208 50 1 3.5436 -6.1200 1.6939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713894496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:52 Heat of formation + Delta-G solvation = -124.673272 kcal Electronic energy + Delta-G solvation = -28240.029866 eV Core-core repulsion = 24073.546936 eV Total energy + Delta-G solvation = -4166.482930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.39745 -40.73667 -40.14727 -39.52265 -36.04847 -35.78844 -35.40442 -33.31667 -32.36673 -31.64437 -29.75648 -28.47145 -27.09200 -26.72892 -25.28310 -23.80098 -23.10645 -21.56469 -21.24694 -21.01128 -20.44955 -19.88848 -18.08697 -17.79705 -17.54507 -17.24310 -16.88460 -16.64979 -16.56870 -16.39041 -16.24523 -16.06476 -15.78400 -15.37774 -15.08891 -14.80476 -14.54395 -14.33991 -14.03300 -13.81172 -13.68649 -13.57081 -13.45461 -13.09210 -12.97941 -12.67259 -12.48901 -12.43595 -12.34046 -12.28482 -12.13021 -11.94852 -11.80952 -11.66311 -11.61007 -11.50189 -11.40794 -10.84189 -10.64032 -10.37568 -10.06839 -10.01667 -9.63276 -8.47186 -5.96166 1.37420 1.40834 1.53695 1.69023 2.05390 2.21583 2.28487 2.78267 3.02484 3.19033 3.33665 3.46272 3.56824 3.68243 3.78376 3.84813 3.98855 4.14658 4.18131 4.19681 4.27105 4.29290 4.35529 4.38512 4.45871 4.47802 4.52013 4.61670 4.64584 4.72543 4.74384 4.82137 4.84090 4.86763 4.87964 4.91360 5.04557 5.07478 5.22037 5.25337 5.37963 5.39434 5.43005 5.50973 5.90096 5.93157 6.08857 6.59227 6.60286 7.12503 7.29741 7.56105 8.12473 8.70246 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.001544 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.463673 B =18134.744037 C =19215.596650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.618 6.618 12 C 0.023 3.977 13 N -0.486 5.486 14 C 0.013 3.987 15 C -0.101 4.101 16 C 0.134 3.866 17 N -0.720 5.720 18 C 0.507 3.493 19 O -0.590 6.590 20 C -0.137 4.137 21 C -0.087 4.087 22 C -0.114 4.114 23 H 0.099 0.901 24 C -0.153 4.153 25 C 0.040 3.960 26 O -0.407 6.407 27 C 0.042 3.958 28 C 0.009 3.991 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.416 0.584 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -27.808 11.459 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.504 6.504 12 C -0.108 4.108 13 N -0.208 5.208 14 C -0.116 4.116 15 C -0.120 4.120 16 C 0.010 3.990 17 N -0.373 5.373 18 C 0.295 3.705 19 O -0.470 6.470 20 C -0.176 4.176 21 C -0.125 4.125 22 C -0.133 4.133 23 H 0.118 0.882 24 C -0.190 4.190 25 C -0.037 4.037 26 O -0.327 6.327 27 C -0.034 4.034 28 C -0.120 4.120 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.125 -27.581 11.178 30.044 hybrid contribution -0.875 1.192 0.297 1.508 sum 3.250 -26.389 11.475 28.959 Atomic orbital electron populations 1.69673 1.06832 1.29273 1.50427 1.26041 0.96549 1.02393 0.96280 0.84922 0.77857 0.76847 0.78671 1.19609 1.19498 1.19801 1.19664 0.92671 0.84095 1.49990 0.90422 1.41965 1.09257 1.04757 1.65446 1.20831 0.88298 0.85940 0.82068 1.90476 1.15847 1.87945 1.56151 1.22348 0.94512 0.90285 1.03688 1.68369 1.31068 1.01392 1.20004 1.24065 0.97867 0.88989 1.00666 1.23059 1.00696 0.92954 0.95314 1.21271 0.91562 0.96451 0.89738 1.46003 1.13321 1.46364 1.31581 1.21334 0.89435 0.78033 0.81710 1.90699 1.20770 1.61436 1.74140 1.21768 0.97988 1.01403 0.96452 1.21206 0.96917 0.98533 0.95881 1.22735 0.99053 0.95593 0.95889 0.88236 1.23017 1.01235 1.00623 0.94162 1.23298 0.92415 0.90579 0.97396 1.88848 1.51663 1.42628 1.49516 1.23849 1.00768 0.94105 0.84679 1.24107 1.02195 0.94883 0.90770 0.91318 0.77094 0.87549 0.90506 0.87748 0.89611 0.86282 0.90819 0.92588 0.74716 0.86024 0.86929 0.92463 0.91565 0.90429 0.89213 0.92328 0.88985 0.87615 0.92293 0.91277 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.09 13.05 21.67 0.28 -49.81 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.58 -30.08 5.29 -306.98 -1.62 -31.71 16 10 C 0.44 21.43 7.83 87.66 0.69 22.11 16 11 O -0.62 -35.08 16.01 -3.07 -0.05 -35.12 16 12 C 0.02 0.81 5.28 85.56 0.45 1.26 16 13 N -0.49 -14.97 5.65 -911.72 -5.15 -20.12 16 14 C 0.01 0.26 7.52 86.41 0.65 0.91 16 15 C -0.10 -1.77 3.93 -10.15 -0.04 -1.81 16 16 C 0.13 2.22 5.51 86.38 0.48 2.69 16 17 N -0.72 -9.95 5.56 -463.05 -2.57 -12.52 16 18 C 0.51 8.54 7.83 87.66 0.69 9.22 16 19 O -0.59 -15.43 15.98 -3.04 -0.05 -15.48 16 20 C -0.14 -1.22 5.60 29.85 0.17 -1.05 16 21 C -0.09 -0.99 3.90 30.59 0.12 -0.87 16 22 C -0.11 -1.04 3.10 -9.49 -0.03 -1.07 16 23 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 24 C -0.15 -1.41 6.60 31.58 0.21 -1.20 16 25 C 0.04 0.46 7.70 72.35 0.56 1.02 16 26 O -0.41 -6.80 11.52 -148.98 -1.72 -8.52 16 27 C 0.04 0.49 6.63 72.67 0.48 0.97 16 28 C 0.01 0.24 7.53 86.36 0.65 0.89 16 29 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16 31 H 0.11 3.25 8.08 -2.39 -0.02 3.23 16 32 H 0.08 2.34 7.39 -2.39 -0.02 2.32 16 33 H 0.10 1.87 8.14 -2.38 -0.02 1.86 16 34 H 0.09 1.51 7.88 -2.39 -0.02 1.49 16 35 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.06 1.11 7.88 -2.39 -0.02 1.09 16 38 H 0.42 3.59 8.47 -92.71 -0.79 2.81 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.65 7.73 -2.39 -0.02 0.63 16 41 H 0.06 0.85 7.94 -2.39 -0.02 0.83 16 42 H 0.07 0.88 8.10 -2.38 -0.02 0.87 16 43 H 0.08 0.73 7.86 -2.38 -0.02 0.72 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 46 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 0.72 7.93 -2.39 -0.02 0.70 16 49 H 0.07 1.76 7.26 -2.39 -0.02 1.74 16 50 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -78.48 409.34 -3.07 -81.55 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.57 Total: 32.08 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.34 Total: 14.37 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -9.06 Total: -114.15 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.81 Total: -59.12 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -78.48 -3.07 -81.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713894496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.124 kcal (2) G-P(sol) polarization free energy of solvation -78.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds