Wall clock time and date at job start Sat Apr 11 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48494 * 109.47432 * 239.99875 * 3 2 1 5 5 H 1.48502 * 109.47519 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47013 * 119.99987 * 3 2 1 7 7 C 1.38811 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99753 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00167 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47351 * 180.02562 * 11 10 9 13 13 C 1.53039 * 109.46271 * 175.00070 * 12 11 10 14 14 C 1.53192 * 109.31196 * 181.38787 * 13 12 11 15 15 N 1.46927 * 108.77459 * 305.36440 * 14 13 12 16 16 C 1.34781 * 120.62954 * 233.58443 * 15 14 13 17 17 O 1.21280 * 119.99688 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.46499 * 109.47021 * 180.02562 * 18 16 15 20 20 C 1.46096 * 118.72649 * 90.00797 * 19 18 16 21 21 C 1.53017 * 109.92575 * 161.35685 * 20 19 18 22 22 O 1.43249 * 108.66579 * 49.15975 * 21 20 19 23 23 C 1.42967 * 112.99117 * 291.63508 * 22 21 20 24 24 C 1.33870 * 118.73031 * 269.72970 * 19 18 16 25 25 O 1.21280 * 118.83343 * 2.16906 * 24 19 18 26 26 C 1.46918 * 118.73800 * 53.86390 * 15 14 13 27 27 C 1.53042 * 109.46112 * 295.07472 * 12 11 10 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99985 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47070 * 60.00201 * 10 9 7 31 31 H 1.08995 * 109.47067 * 300.00159 * 10 9 7 32 32 H 1.08999 * 109.46848 * 60.00160 * 11 10 9 33 33 H 1.08998 * 109.46897 * 300.00430 * 11 10 9 34 34 H 1.09009 * 109.45889 * 55.02823 * 12 11 10 35 35 H 1.09003 * 109.49762 * 61.43548 * 13 12 11 36 36 H 1.09003 * 109.52561 * 301.35650 * 13 12 11 37 37 H 1.09003 * 109.58263 * 185.57706 * 14 13 12 38 38 H 1.08997 * 109.70489 * 65.22311 * 14 13 12 39 39 H 1.09006 * 109.46790 * 60.00295 * 18 16 15 40 40 H 1.08995 * 109.47174 * 300.00804 * 18 16 15 41 41 H 1.08999 * 109.39338 * 281.49822 * 20 19 18 42 42 H 1.08995 * 109.39513 * 41.21504 * 20 19 18 43 43 H 1.08998 * 109.60512 * 168.91413 * 21 20 19 44 44 H 1.09000 * 109.60595 * 289.24788 * 21 20 19 45 45 H 1.08997 * 109.41803 * 169.70364 * 23 22 21 46 46 H 1.09000 * 109.41540 * 289.49657 * 23 22 21 47 47 H 1.09003 * 109.59022 * 65.92881 * 26 15 14 48 48 H 1.09006 * 109.58891 * 186.34949 * 26 15 14 49 49 H 1.09008 * 109.49396 * 298.56170 * 27 12 11 50 50 H 1.08990 * 109.50177 * 58.62449 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8287 -6.1447 0.0018 13 6 0.8387 -7.3049 0.1282 14 6 1.6104 -8.6278 0.1634 15 7 2.4778 -8.7009 -1.0202 16 6 2.4245 -9.7648 -1.8460 17 8 1.6549 -10.6733 -1.6155 18 6 3.3202 -9.8248 -3.0564 19 7 3.0729 -11.0711 -3.7856 20 6 2.0529 -11.0821 -4.8315 21 6 2.2654 -12.2839 -5.7545 22 8 2.4237 -13.4580 -4.9493 23 6 3.6410 -13.4609 -4.1995 24 6 3.7942 -12.1543 -3.4717 25 8 4.5996 -12.0790 -2.5681 26 6 3.4088 -7.5952 -1.2831 27 6 2.6132 -6.2812 -1.3051 28 1 -0.4849 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6847 -3.7145 0.8905 31 1 2.6847 -3.7145 -0.8894 32 1 0.4368 -4.7621 -0.8886 33 1 0.4374 -4.7617 0.8913 34 1 2.5205 -6.1642 0.8440 35 1 0.1624 -7.3009 -0.7266 36 1 0.2636 -7.1946 1.0476 37 1 0.9077 -9.4610 0.1535 38 1 2.2194 -8.6741 1.0662 39 1 4.3625 -9.7897 -2.7391 40 1 3.1097 -8.9758 -3.7067 41 1 1.0658 -11.1473 -4.3738 42 1 2.1207 -10.1627 -5.4130 43 1 1.4001 -12.4017 -6.4067 44 1 3.1597 -12.1281 -6.3579 45 1 3.6200 -14.2774 -3.4777 46 1 4.4836 -13.5993 -4.8770 47 1 4.1618 -7.5564 -0.4959 48 1 3.8933 -7.7468 -2.2477 49 1 1.9201 -6.2868 -2.1465 50 1 3.3010 -5.4418 -1.4060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714268784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:01 Heat of formation + Delta-G solvation = -98.510038 kcal Electronic energy + Delta-G solvation = -29832.791929 eV Core-core repulsion = 25667.443522 eV Total energy + Delta-G solvation = -4165.348407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31603 -40.12164 -38.20354 -37.88467 -35.75841 -35.32375 -33.61773 -31.78547 -30.99248 -30.77836 -29.58860 -28.36886 -26.60286 -24.92371 -24.32978 -23.46604 -22.95159 -21.32544 -20.42652 -19.74143 -18.98880 -18.20020 -17.81386 -17.37958 -17.02201 -16.39252 -15.97448 -15.90872 -15.48113 -15.08092 -14.78182 -14.75388 -14.43928 -14.19538 -13.97846 -13.81990 -13.78319 -13.61390 -13.34693 -13.12525 -12.97590 -12.69679 -12.42701 -12.26784 -12.19417 -11.80457 -11.39365 -11.30197 -11.17206 -11.06006 -11.02005 -10.79137 -10.63916 -10.35757 -10.30699 -10.19314 -9.96219 -9.89843 -9.67757 -9.16101 -8.86891 -8.80528 -6.91925 -5.76961 -3.05581 1.99927 2.23514 2.38814 2.86667 3.22103 3.42912 3.47117 3.48412 3.81095 4.18544 4.21866 4.41446 4.55491 4.55787 4.57983 4.66809 4.73385 4.78696 4.79995 4.87917 4.93249 4.96596 5.06960 5.13246 5.21083 5.28922 5.38082 5.53761 5.58320 5.64626 5.67290 5.71939 5.79592 5.83212 5.99845 6.01396 6.15221 6.23534 6.33917 6.35727 6.41066 6.43912 6.83496 6.85689 6.90796 7.16047 7.57774 7.68205 7.94372 8.42317 9.52885 10.12265 10.46308 11.45959 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.001830 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.727078 B =15298.516841 C =15609.260062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.121 4.121 12 C -0.082 4.082 13 C -0.128 4.128 14 C 0.112 3.888 15 N -0.608 5.608 16 C 0.501 3.499 17 O -0.535 6.535 18 C 0.091 3.909 19 N -0.587 5.587 20 C 0.078 3.922 21 C 0.045 3.955 22 O -0.368 6.368 23 C 0.054 3.946 24 C 0.493 3.507 25 O -0.538 6.538 26 C 0.105 3.895 27 C -0.132 4.132 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -26.563 -11.659 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.158 4.158 12 C -0.102 4.102 13 C -0.166 4.166 14 C -0.010 4.010 15 N -0.343 5.343 16 C 0.288 3.712 17 O -0.412 6.412 18 C -0.035 4.035 19 N -0.320 5.320 20 C -0.045 4.045 21 C -0.032 4.032 22 O -0.286 6.286 23 C -0.026 4.026 24 C 0.281 3.719 25 O -0.415 6.415 26 C -0.018 4.018 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.216 0.784 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.149 0.851 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.343 -27.069 -11.077 29.927 hybrid contribution 0.252 1.463 0.057 1.486 sum 6.595 -25.605 -11.019 28.645 Atomic orbital electron populations 1.69655 1.05115 1.25741 1.57787 1.24759 0.95552 0.97737 1.03119 0.86255 0.78503 0.83519 0.77833 1.21285 1.21678 1.21278 1.19190 0.90978 0.84262 1.42662 0.91284 1.42385 1.05893 1.00135 1.89473 1.20696 0.93608 0.85609 0.97554 1.21757 0.98686 0.93304 1.02100 1.21083 0.96979 0.94546 0.97553 1.21977 0.98111 0.93601 1.02886 1.21627 0.93658 0.98929 0.86768 1.48151 1.39987 1.19791 1.26340 1.21004 0.83901 0.81813 0.84496 1.90693 1.39643 1.36975 1.73867 1.21455 1.01456 0.87557 0.93077 1.47058 1.38084 1.10260 1.36590 1.22266 0.92655 1.00231 0.89328 1.23017 1.03564 0.84079 0.92537 1.88226 1.39458 1.40812 1.60069 1.22814 0.88778 0.95265 0.95727 1.21027 0.80548 0.86188 0.84163 1.90754 1.36691 1.84008 1.30065 1.21963 0.91713 0.86308 1.01818 1.22134 0.99831 0.96401 0.98604 0.93479 0.78360 0.96651 0.96325 0.92061 0.91894 0.90935 0.91559 0.90530 0.89280 0.91479 0.86554 0.87166 0.89977 0.89315 0.86406 0.91677 0.85070 0.89058 0.90784 0.90115 0.91406 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.67 5.60 -59.91 -0.34 -19.01 16 10 C 0.15 2.97 6.01 -4.04 -0.02 2.94 16 11 C -0.12 -1.84 4.80 -26.73 -0.13 -1.97 16 12 C -0.08 -0.96 2.15 -90.58 -0.19 -1.15 16 13 C -0.13 -1.37 5.36 -26.61 -0.14 -1.51 16 14 C 0.11 1.22 6.43 -3.71 -0.02 1.20 16 15 N -0.61 -6.47 2.97 -172.50 -0.51 -6.98 16 16 C 0.50 6.00 7.76 -10.98 -0.09 5.91 16 17 O -0.54 -8.41 15.84 5.56 0.09 -8.33 16 18 C 0.09 0.79 4.12 -5.19 -0.02 0.77 16 19 N -0.59 -5.31 2.32 -175.79 -0.41 -5.72 16 20 C 0.08 0.47 6.68 -4.25 -0.03 0.44 16 21 C 0.05 0.21 6.89 37.17 0.26 0.46 16 22 O -0.37 -2.83 10.85 -35.23 -0.38 -3.21 16 23 C 0.05 0.39 6.99 35.83 0.25 0.64 16 24 C 0.49 5.22 7.58 -11.56 -0.09 5.14 16 25 O -0.54 -7.61 16.39 5.56 0.09 -7.51 16 26 C 0.10 0.89 6.37 -3.49 -0.02 0.87 16 27 C -0.13 -1.34 5.16 -26.39 -0.14 -1.47 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.36 6.53 -51.93 -0.34 0.02 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 1.02 7.08 -51.93 -0.37 0.65 16 40 H 0.11 0.61 7.49 -51.93 -0.39 0.22 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.30 7.99 -51.93 -0.41 -0.11 16 43 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.20 8.10 -51.93 -0.42 -0.22 16 45 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 49 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 50 H 0.09 0.92 6.50 -51.93 -0.34 0.58 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -37.34 395.97 -8.72 -46.06 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.30 Total: 4.20 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.63 Total: 4.83 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.53 Total: -59.35 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.20 Total: -19.05 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.34 -8.72 -46.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714268784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.447 kcal (2) G-P(sol) polarization free energy of solvation -37.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds