Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48494 * 109.47432 * 239.99875 * 3 2 1 5 5 H 1.48502 * 109.47519 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47013 * 119.99987 * 3 2 1 7 7 C 1.38811 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99753 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00167 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47351 * 180.02562 * 11 10 9 13 13 C 1.53039 * 109.46271 * 175.00070 * 12 11 10 14 14 C 1.53192 * 109.31196 * 181.38787 * 13 12 11 15 15 N 1.46927 * 108.77459 * 305.36440 * 14 13 12 16 16 C 1.34781 * 120.62954 * 233.58443 * 15 14 13 17 17 O 1.21280 * 119.99688 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.46499 * 109.47021 * 180.02562 * 18 16 15 20 20 C 1.46096 * 118.72649 * 90.00797 * 19 18 16 21 21 C 1.53017 * 109.92575 * 161.35685 * 20 19 18 22 22 O 1.43249 * 108.66579 * 49.15975 * 21 20 19 23 23 C 1.42967 * 112.99117 * 291.63508 * 22 21 20 24 24 C 1.33870 * 118.73031 * 269.72970 * 19 18 16 25 25 O 1.21280 * 118.83343 * 2.16906 * 24 19 18 26 26 C 1.46918 * 118.73800 * 53.86390 * 15 14 13 27 27 C 1.53042 * 109.46112 * 295.07472 * 12 11 10 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99985 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47070 * 60.00201 * 10 9 7 31 31 H 1.08995 * 109.47067 * 300.00159 * 10 9 7 32 32 H 1.08999 * 109.46848 * 60.00160 * 11 10 9 33 33 H 1.08998 * 109.46897 * 300.00430 * 11 10 9 34 34 H 1.09009 * 109.45889 * 55.02823 * 12 11 10 35 35 H 1.09003 * 109.49762 * 61.43548 * 13 12 11 36 36 H 1.09003 * 109.52561 * 301.35650 * 13 12 11 37 37 H 1.09003 * 109.58263 * 185.57706 * 14 13 12 38 38 H 1.08997 * 109.70489 * 65.22311 * 14 13 12 39 39 H 1.09006 * 109.46790 * 60.00295 * 18 16 15 40 40 H 1.08995 * 109.47174 * 300.00804 * 18 16 15 41 41 H 1.08999 * 109.39338 * 281.49822 * 20 19 18 42 42 H 1.08995 * 109.39513 * 41.21504 * 20 19 18 43 43 H 1.08998 * 109.60512 * 168.91413 * 21 20 19 44 44 H 1.09000 * 109.60595 * 289.24788 * 21 20 19 45 45 H 1.08997 * 109.41803 * 169.70364 * 23 22 21 46 46 H 1.09000 * 109.41540 * 289.49657 * 23 22 21 47 47 H 1.09003 * 109.59022 * 65.92881 * 26 15 14 48 48 H 1.09006 * 109.58891 * 186.34949 * 26 15 14 49 49 H 1.09008 * 109.49396 * 298.56170 * 27 12 11 50 50 H 1.08990 * 109.50177 * 58.62449 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8287 -6.1447 0.0018 13 6 0.8387 -7.3049 0.1282 14 6 1.6104 -8.6278 0.1634 15 7 2.4778 -8.7009 -1.0202 16 6 2.4245 -9.7648 -1.8460 17 8 1.6549 -10.6733 -1.6155 18 6 3.3202 -9.8248 -3.0564 19 7 3.0729 -11.0711 -3.7856 20 6 2.0529 -11.0821 -4.8315 21 6 2.2654 -12.2839 -5.7545 22 8 2.4237 -13.4580 -4.9493 23 6 3.6410 -13.4609 -4.1995 24 6 3.7942 -12.1543 -3.4717 25 8 4.5996 -12.0790 -2.5681 26 6 3.4088 -7.5952 -1.2831 27 6 2.6132 -6.2812 -1.3051 28 1 -0.4849 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6847 -3.7145 0.8905 31 1 2.6847 -3.7145 -0.8894 32 1 0.4368 -4.7621 -0.8886 33 1 0.4374 -4.7617 0.8913 34 1 2.5205 -6.1642 0.8440 35 1 0.1624 -7.3009 -0.7266 36 1 0.2636 -7.1946 1.0476 37 1 0.9077 -9.4610 0.1535 38 1 2.2194 -8.6741 1.0662 39 1 4.3625 -9.7897 -2.7391 40 1 3.1097 -8.9758 -3.7067 41 1 1.0658 -11.1473 -4.3738 42 1 2.1207 -10.1627 -5.4130 43 1 1.4001 -12.4017 -6.4067 44 1 3.1597 -12.1281 -6.3579 45 1 3.6200 -14.2774 -3.4777 46 1 4.4836 -13.5993 -4.8770 47 1 4.1618 -7.5564 -0.4959 48 1 3.8933 -7.7468 -2.2477 49 1 1.9201 -6.2868 -2.1465 50 1 3.3010 -5.4418 -1.4060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714268784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -125.271820 kcal Electronic energy + Delta-G solvation = -29833.952407 eV Core-core repulsion = 25667.443522 eV Total energy + Delta-G solvation = -4166.508885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.03100 -40.94961 -39.03203 -38.71176 -36.90871 -36.39658 -35.07507 -33.13558 -32.27489 -31.32248 -30.40961 -29.65672 -27.37958 -26.30976 -24.93796 -24.46056 -24.29864 -22.59688 -21.52194 -20.50196 -19.74671 -19.13037 -18.80524 -18.54573 -18.07494 -17.09122 -16.72629 -16.63685 -16.61200 -16.23403 -15.84873 -15.70601 -15.47808 -15.32891 -15.17796 -14.90747 -14.76454 -14.51836 -14.37555 -14.11394 -14.01281 -13.82617 -13.21841 -13.14224 -13.02626 -12.80894 -12.77657 -12.52272 -12.30103 -12.28475 -12.21250 -12.13602 -11.96236 -11.64477 -11.63223 -11.40799 -11.20271 -11.10759 -10.86945 -10.53525 -9.89669 -9.70519 -8.98228 -7.94665 -5.23613 1.24766 1.47670 1.50474 1.50971 1.57132 1.62182 2.08414 2.56784 2.79128 3.25846 3.38777 3.42490 3.68115 3.76095 3.79423 3.87151 3.97029 4.09916 4.14777 4.18741 4.20814 4.25550 4.32044 4.35141 4.40779 4.45589 4.49865 4.58213 4.62981 4.72416 4.77993 4.80544 4.84498 4.89870 4.96372 5.02971 5.05375 5.10920 5.22464 5.29899 5.40056 5.49799 5.54425 5.58364 5.78114 6.19788 6.28017 6.32065 6.84795 7.06694 7.33495 8.11621 8.33184 9.28878 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.001830 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.727078 B =15298.516841 C =15609.260062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.751 5.751 10 C 0.151 3.849 11 C -0.108 4.108 12 C -0.075 4.075 13 C -0.118 4.118 14 C 0.114 3.886 15 N -0.607 5.607 16 C 0.494 3.506 17 O -0.582 6.582 18 C 0.090 3.910 19 N -0.588 5.588 20 C 0.073 3.927 21 C 0.042 3.958 22 O -0.387 6.387 23 C 0.057 3.943 24 C 0.482 3.518 25 O -0.584 6.584 26 C 0.106 3.894 27 C -0.128 4.128 28 H 0.251 0.749 29 H 0.372 0.628 30 H 0.016 0.984 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.148 0.852 41 H 0.061 0.939 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.120 0.880 47 H 0.083 0.917 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 -26.630 -13.305 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.393 5.393 10 C 0.025 3.975 11 C -0.146 4.146 12 C -0.094 4.094 13 C -0.156 4.156 14 C -0.009 4.009 15 N -0.341 5.341 16 C 0.282 3.718 17 O -0.462 6.462 18 C -0.036 4.036 19 N -0.319 5.319 20 C -0.049 4.049 21 C -0.034 4.034 22 O -0.305 6.305 23 C -0.022 4.022 24 C 0.271 3.729 25 O -0.465 6.465 26 C -0.015 4.015 27 C -0.166 4.166 28 H 0.060 0.940 29 H 0.203 0.797 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.166 0.834 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.158 0.842 44 H 0.105 0.895 45 H 0.148 0.852 46 H 0.138 0.862 47 H 0.101 0.899 48 H 0.128 0.872 49 H 0.085 0.915 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.030 -27.140 -12.748 31.041 hybrid contribution -0.292 1.458 0.583 1.597 sum 7.738 -25.682 -12.165 29.453 Atomic orbital electron populations 1.69821 1.06680 1.26134 1.59584 1.25627 0.96457 1.01308 1.03818 0.85180 0.77166 0.78959 0.78275 1.20120 1.22251 1.20420 1.19633 0.91568 0.85423 1.41133 0.90489 1.42665 1.05665 1.01573 1.89447 1.20897 0.94238 0.84598 0.97764 1.21617 0.97875 0.93708 1.01354 1.21009 0.96939 0.92558 0.98899 1.21863 0.97745 0.93151 1.02830 1.21560 0.93699 0.98128 0.87504 1.48273 1.39891 1.20072 1.25817 1.21653 0.83633 0.81260 0.85208 1.90671 1.41776 1.38682 1.75091 1.21619 1.00605 0.88894 0.92475 1.47261 1.37952 1.10017 1.36720 1.22496 0.90756 1.02651 0.88965 1.23281 1.05619 0.82367 0.92118 1.88204 1.39669 1.42222 1.60443 1.22843 0.89796 0.93421 0.96125 1.21678 0.80013 0.87412 0.83761 1.90719 1.38810 1.84863 1.32098 1.22108 0.91090 0.84450 1.03882 1.22081 0.99718 0.97334 0.97441 0.94042 0.79692 0.96583 0.95162 0.92707 0.92813 0.90381 0.92283 0.90131 0.90956 0.90588 0.86396 0.83408 0.92086 0.86045 0.84249 0.89468 0.85221 0.86249 0.89862 0.87199 0.91521 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -38.12 5.60 -343.47 -1.92 -40.04 16 10 C 0.15 5.71 6.01 86.38 0.52 6.23 16 11 C -0.11 -3.21 4.80 30.59 0.15 -3.06 16 12 C -0.07 -1.63 2.15 -10.77 -0.02 -1.65 16 13 C -0.12 -2.42 5.36 30.67 0.16 -2.26 16 14 C 0.11 2.40 6.43 86.36 0.56 2.95 16 15 N -0.61 -12.08 2.97 -818.07 -2.43 -14.50 16 16 C 0.49 11.44 7.76 87.66 0.68 12.12 16 17 O -0.58 -18.64 15.84 -3.03 -0.05 -18.69 16 18 C 0.09 1.40 4.12 85.63 0.35 1.75 16 19 N -0.59 -9.84 2.32 -828.97 -1.92 -11.76 16 20 C 0.07 0.74 6.68 86.46 0.58 1.32 16 21 C 0.04 0.29 6.89 71.99 0.50 0.78 16 22 O -0.39 -5.43 10.85 -148.98 -1.62 -7.05 16 23 C 0.06 0.79 6.99 71.13 0.50 1.28 16 24 C 0.48 9.96 7.58 87.69 0.66 10.62 16 25 O -0.58 -16.65 16.39 -3.03 -0.05 -16.70 16 26 C 0.11 1.52 6.37 86.51 0.55 2.07 16 27 C -0.13 -2.30 5.16 30.82 0.16 -2.14 16 28 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.37 20.20 7.67 -92.71 -0.71 19.49 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.03 1.10 6.53 -2.39 -0.02 1.08 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.80 7.01 -2.39 -0.02 1.78 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.12 1.84 7.08 -2.38 -0.02 1.82 16 40 H 0.15 1.10 7.49 -2.39 -0.02 1.08 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.12 0.41 7.99 -2.39 -0.02 0.39 16 43 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.09 0.24 8.10 -2.39 -0.02 0.22 16 45 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.11 0.96 5.93 -2.38 -0.01 0.95 16 49 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.09 1.59 6.50 -2.39 -0.02 1.58 16 Total: -1.00 -82.63 395.97 1.20 -81.44 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.23 Total: 25.85 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.65 Total: 13.03 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -5.99 Total: -125.69 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.71 Total: -42.44 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -82.63 1.20 -81.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714268784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.835 kcal (2) G-P(sol) polarization free energy of solvation -82.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds