Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00021 * 2 1 4 4 H 1.48501 * 109.46714 * 270.00285 * 3 2 1 5 5 H 1.48498 * 109.47249 * 29.99549 * 3 2 1 6 6 H 1.48497 * 109.47280 * 149.99969 * 3 2 1 7 7 C 1.38806 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00186 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99864 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46953 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47139 * 179.97438 * 11 10 9 13 13 C 1.53043 * 109.45892 * 174.99863 * 12 11 10 14 14 C 1.53190 * 109.30978 * 181.37490 * 13 12 11 15 15 N 1.46926 * 108.77911 * 305.36376 * 14 13 12 16 16 C 1.34769 * 120.63226 * 233.59015 * 15 14 13 17 17 O 1.21288 * 120.00453 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00135 * 179.97438 * 16 15 14 19 19 H 1.09005 * 109.86714 * 304.55204 * 18 16 15 20 20 C 1.54099 * 110.00351 * 65.63454 * 18 16 15 21 21 C 1.54815 * 104.18723 * 121.52900 * 20 18 16 22 22 C 1.55002 * 102.09032 * 20.88011 * 21 20 18 23 23 H 1.09002 * 110.61904 * 81.47860 * 22 21 20 24 24 C 1.50697 * 110.75204 * 204.41231 * 22 21 20 25 25 N 1.34778 * 120.00366 * 292.73163 * 24 22 21 26 26 O 1.21282 * 119.99970 * 112.73042 * 24 22 21 27 27 O 1.43744 * 109.88188 * 183.54474 * 18 16 15 28 28 C 1.46927 * 118.73308 * 53.85957 * 15 14 13 29 29 C 1.53033 * 109.45172 * 295.06298 * 12 11 10 30 30 H 0.97009 * 119.99816 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99393 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47115 * 59.99692 * 10 9 7 33 33 H 1.09003 * 109.47028 * 299.99755 * 10 9 7 34 34 H 1.09003 * 109.46997 * 59.99555 * 11 10 9 35 35 H 1.09003 * 109.47083 * 299.99758 * 11 10 9 36 36 H 1.09004 * 109.45642 * 55.02750 * 12 11 10 37 37 H 1.08998 * 109.49947 * 61.42464 * 13 12 11 38 38 H 1.09002 * 109.52420 * 301.34220 * 13 12 11 39 39 H 1.09003 * 109.58427 * 185.57725 * 14 13 12 40 40 H 1.09001 * 109.59058 * 65.15526 * 14 13 12 41 41 H 1.08999 * 110.48774 * 240.20195 * 20 18 16 42 42 H 1.08999 * 110.48978 * 2.72098 * 20 18 16 43 43 H 1.08994 * 110.90611 * 262.68885 * 21 20 18 44 44 H 1.08995 * 110.90822 * 139.07665 * 21 20 18 45 45 H 0.97003 * 119.99588 * 359.97438 * 25 24 22 46 46 H 0.96991 * 120.00731 * 179.97438 * 25 24 22 47 47 H 1.09000 * 109.58657 * 65.93693 * 28 15 14 48 48 H 1.09010 * 109.58322 * 186.35333 * 28 15 14 49 49 H 1.09001 * 109.49666 * 298.57297 * 29 12 11 50 50 H 1.08997 * 109.49846 * 58.66682 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 6 0.8389 -7.3050 0.1270 14 6 1.6106 -8.6279 0.1606 15 7 2.4770 -8.7002 -1.0239 16 6 2.4229 -9.7634 -1.8503 17 8 1.6540 -10.6726 -1.6194 18 6 3.3176 -9.8226 -3.0615 19 1 3.1692 -8.9342 -3.6755 20 6 4.7921 -9.9164 -2.6236 21 6 5.2958 -11.2317 -3.2663 22 6 4.2690 -11.4499 -4.4067 23 1 4.5276 -10.8463 -5.2768 24 6 4.1868 -12.9077 -4.7796 25 7 5.2395 -13.5145 -5.3628 26 8 3.1734 -13.5349 -4.5550 27 8 3.0239 -11.0019 -3.8291 28 6 3.4078 -7.5942 -1.2868 29 6 2.6121 -6.2803 -1.3072 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3879 0.0005 32 1 2.6847 -3.7145 0.8904 33 1 2.6847 -3.7145 -0.8895 34 1 0.4368 -4.7620 -0.8886 35 1 0.4376 -4.7617 0.8914 36 1 2.5212 -6.1646 0.8422 37 1 0.1619 -7.3003 -0.7272 38 1 0.2647 -7.1953 1.0470 39 1 0.9079 -9.4611 0.1507 40 1 2.2206 -8.6723 1.0628 41 1 5.3576 -9.0654 -3.0030 42 1 4.8649 -9.9680 -1.5373 43 1 5.2618 -12.0526 -2.5501 44 1 6.3019 -11.1084 -3.6671 45 1 6.0500 -13.0127 -5.5428 46 1 5.1869 -14.4529 -5.6025 47 1 4.1614 -7.5561 -0.5003 48 1 3.8914 -7.7452 -2.2520 49 1 1.9183 -6.2852 -2.1479 50 1 3.3003 -5.4411 -1.4078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714284152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = -112.730004 kcal Electronic energy + Delta-G solvation = -29753.240377 eV Core-core repulsion = 25587.275346 eV Total energy + Delta-G solvation = -4165.965031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.19326 -40.03528 -38.66714 -37.62449 -35.36896 -34.28218 -33.72902 -32.64156 -31.72064 -30.98850 -30.18003 -28.38395 -25.77657 -24.60652 -23.49896 -23.07521 -22.35894 -21.13178 -21.04468 -20.32983 -19.38527 -18.21002 -17.83452 -17.15330 -17.01679 -16.82872 -16.26761 -15.63815 -15.07376 -15.01790 -14.82556 -14.75827 -14.54990 -14.15069 -14.08803 -13.86226 -13.78511 -13.49843 -13.19464 -12.92508 -12.68518 -12.61335 -12.36409 -12.25477 -12.07070 -11.58012 -11.36066 -11.29057 -11.16224 -11.00344 -10.80543 -10.75517 -10.61646 -10.32331 -10.21516 -10.20605 -10.18950 -9.94612 -9.67670 -9.66025 -8.86921 -8.80572 -6.91243 -5.76534 -3.05163 2.11113 2.30150 2.43516 2.85220 3.42473 3.47193 3.49420 3.53615 3.79639 4.07225 4.18248 4.27150 4.42998 4.55537 4.56484 4.58510 4.74054 4.79130 4.82613 4.95211 4.97412 5.05732 5.13067 5.21389 5.25671 5.36662 5.38301 5.54351 5.59811 5.67128 5.71381 5.80637 5.82449 6.01491 6.03332 6.05588 6.18095 6.29715 6.35443 6.38489 6.42321 6.45175 6.79230 6.86419 6.91587 7.15867 7.68750 7.78389 7.97990 8.42619 9.53309 10.12931 10.46847 11.46418 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.001849 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.509745 B =15142.507295 C =15846.643785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.121 4.121 12 C -0.082 4.082 13 C -0.129 4.129 14 C 0.113 3.887 15 N -0.608 5.608 16 C 0.514 3.486 17 O -0.518 6.518 18 C 0.058 3.942 19 H 0.101 0.899 20 C -0.145 4.145 21 C -0.141 4.141 22 C 0.054 3.946 23 H 0.102 0.898 24 C 0.522 3.478 25 N -0.853 5.853 26 O -0.513 6.513 27 O -0.316 6.316 28 C 0.103 3.897 29 C -0.133 4.133 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.015 0.985 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.401 0.599 46 H 0.406 0.594 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.808 -25.284 -8.276 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.101 4.101 13 C -0.168 4.168 14 C -0.009 4.009 15 N -0.344 5.344 16 C 0.300 3.700 17 O -0.392 6.392 18 C -0.004 4.004 19 H 0.119 0.881 20 C -0.183 4.183 21 C -0.179 4.179 22 C -0.007 4.007 23 H 0.120 0.880 24 C 0.304 3.696 25 N -0.419 5.419 26 O -0.385 6.385 27 O -0.233 6.233 28 C -0.020 4.020 29 C -0.171 4.171 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.230 0.770 46 H 0.238 0.762 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.529 -26.011 -7.935 30.833 hybrid contribution 0.755 1.142 -0.230 1.388 sum 15.284 -24.869 -8.165 30.311 Atomic orbital electron populations 1.69665 1.05117 1.25617 1.57817 1.24755 0.95537 0.97723 1.03129 0.86188 0.78625 0.83873 0.77492 1.21746 1.21761 1.20792 1.19231 0.90994 0.84262 1.42582 0.91242 1.42396 1.05913 1.00138 1.89448 1.20693 0.93608 0.85626 0.97503 1.21765 0.98707 0.93295 1.02161 1.21075 0.96967 0.94574 0.97454 1.21994 0.98184 0.93557 1.03026 1.21646 0.93672 0.99126 0.86423 1.48078 1.40330 1.19624 1.26352 1.20311 0.83771 0.82126 0.83764 1.90750 1.38583 1.36797 1.73086 1.22722 0.94410 0.90779 0.92443 0.88127 1.23016 0.93507 0.98692 1.03107 1.23121 0.98937 0.98642 0.97246 1.23053 0.86309 0.93374 0.98011 0.88039 1.20139 0.83417 0.88743 0.77256 1.43715 1.17336 1.15637 1.65256 1.90835 1.30101 1.65942 1.51668 1.89167 1.26318 1.42475 1.65350 1.22039 0.91789 0.86430 1.01718 1.22146 0.99911 0.96359 0.98730 0.93527 0.78346 0.96677 0.96349 0.92019 0.91874 0.90965 0.91424 0.90461 0.89098 0.91382 0.88643 0.89273 0.89594 0.88672 0.77038 0.76233 0.90829 0.90015 0.91298 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.74 -18.64 5.60 -59.91 -0.34 -18.97 16 10 C 0.15 2.95 6.02 -4.04 -0.02 2.93 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 12 C -0.08 -0.94 2.15 -90.58 -0.19 -1.13 16 13 C -0.13 -1.40 5.36 -26.61 -0.14 -1.54 16 14 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 15 N -0.61 -6.25 2.97 -172.50 -0.51 -6.76 16 16 C 0.51 6.43 6.89 -10.99 -0.08 6.35 16 17 O -0.52 -8.99 15.94 -14.02 -0.22 -9.21 16 18 C 0.06 0.53 2.94 -27.31 -0.08 0.45 16 19 H 0.10 0.73 7.48 -51.93 -0.39 0.34 16 20 C -0.15 -0.77 5.10 -25.20 -0.13 -0.90 16 21 C -0.14 -0.66 6.58 -24.72 -0.16 -0.82 16 22 C 0.05 0.39 3.76 -26.83 -0.10 0.29 16 23 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 24 C 0.52 4.67 7.48 -10.99 -0.08 4.59 16 25 N -0.85 -3.13 8.87 31.22 0.28 -2.85 16 26 O -0.51 -7.71 17.40 -13.51 -0.24 -7.94 16 27 O -0.32 -3.90 10.02 -64.30 -0.64 -4.54 16 28 C 0.10 0.80 5.68 -3.49 -0.02 0.78 16 29 C -0.13 -1.34 5.16 -26.39 -0.14 -1.48 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.02 0.35 6.53 -51.93 -0.34 0.01 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.10 7.01 -51.93 -0.36 0.73 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.24 7.73 -51.93 -0.40 -0.17 16 42 H 0.09 0.52 7.55 -51.93 -0.39 0.12 16 43 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 44 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.40 0.01 8.83 -40.82 -0.36 -0.35 16 46 H 0.41 1.23 8.93 -40.82 -0.36 0.86 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.46 4.85 -51.92 -0.25 0.20 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.09 0.89 6.50 -51.93 -0.34 0.55 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -40.10 395.39 -9.69 -49.79 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.13 Total: 3.59 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.55 Total: 1.31 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.15 Total: -56.23 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.10 Total: -21.70 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -40.10 -9.69 -49.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714284152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.941 kcal (2) G-P(sol) polarization free energy of solvation -40.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds