Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 112.84609 * 2 1 4 4 O 1.21287 * 119.99585 * 228.80053 * 3 2 1 5 5 N 1.34777 * 120.00455 * 48.79526 * 3 2 1 6 6 C 1.46501 * 120.00124 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46791 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.50935 * 304.99995 * 7 6 5 9 9 C 1.53096 * 109.50367 * 184.91238 * 7 6 5 10 10 N 1.47013 * 109.26092 * 183.21569 * 9 7 6 11 11 C 1.46900 * 111.00450 * 182.39377 * 10 9 7 12 12 C 1.50695 * 109.46850 * 66.36506 * 11 10 9 13 13 O 1.21295 * 119.99994 * 6.28158 * 12 11 10 14 14 N 1.34773 * 120.00071 * 186.27436 * 12 11 10 15 15 C 1.37102 * 120.00504 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99532 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00307 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99628 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46924 * 89.99908 * 19 17 15 21 21 H 1.48498 * 109.46833 * 209.99835 * 19 17 15 22 22 H 1.48501 * 109.46895 * 330.00088 * 19 17 15 23 23 C 1.47015 * 110.74793 * 58.61847 * 10 9 7 24 24 C 1.53097 * 109.26000 * 301.38454 * 23 10 9 25 25 O 1.43018 * 109.29108 * 56.82992 * 24 23 10 26 26 C 1.53776 * 113.61945 * 228.79994 * 2 1 3 27 27 C 1.53781 * 87.07976 * 220.02059 * 26 2 1 28 28 C 1.53772 * 87.08392 * 25.42846 * 27 26 2 29 29 H 1.09000 * 109.46953 * 191.19567 * 1 2 3 30 30 H 1.08994 * 109.47832 * 311.20391 * 1 2 3 31 31 H 1.09002 * 109.46961 * 71.20616 * 1 2 3 32 32 H 0.96998 * 119.99493 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.47305 * 300.00564 * 6 5 3 34 34 H 1.09006 * 109.46723 * 60.00746 * 6 5 3 35 35 H 1.09002 * 109.51398 * 303.15862 * 9 7 6 36 36 H 1.09007 * 109.50799 * 63.28793 * 9 7 6 37 37 H 1.08996 * 109.47244 * 186.36644 * 11 10 9 38 38 H 1.09003 * 109.46905 * 306.36524 * 11 10 9 39 39 H 0.96999 * 119.99953 * 0.02562 * 14 12 11 40 40 H 0.97009 * 119.99624 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.50635 * 61.31980 * 23 10 9 42 42 H 1.09003 * 109.51077 * 181.44935 * 23 10 9 43 43 H 1.09000 * 109.50743 * 176.77972 * 24 23 10 44 44 H 1.08998 * 109.50839 * 296.86972 * 24 23 10 45 45 H 1.09001 * 113.61716 * 105.47067 * 26 2 1 46 46 H 1.09005 * 113.68780 * 334.57903 * 26 2 1 47 47 H 1.09003 * 113.61514 * 139.98604 * 27 26 2 48 48 H 1.09008 * 113.60899 * 270.87965 * 27 26 2 49 49 H 1.09006 * 113.61254 * 89.11823 * 28 27 26 50 50 H 1.09001 * 113.62105 * 220.01893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 8 2.9881 1.6790 -0.7904 5 7 1.6682 2.3084 0.8781 6 6 2.2375 3.6583 0.8784 7 6 1.5601 4.4971 1.9641 8 1 0.4804 4.4811 1.8158 9 6 2.0657 5.9400 1.8851 10 7 1.4706 6.7229 2.9778 11 6 1.8864 8.1299 2.9046 12 6 1.3078 8.7608 1.6643 13 8 0.5262 8.1392 0.9759 14 7 1.6587 10.0157 1.3201 15 6 1.1328 10.5895 0.1915 16 1 0.4370 10.0360 -0.4215 17 6 1.4950 11.8831 -0.1636 18 7 2.3420 12.5563 0.5821 19 14 0.7778 12.6650 -1.7010 20 1 -0.4780 13.3777 -1.3541 21 1 1.7543 13.6299 -2.2672 22 1 0.4869 11.6091 -2.7038 23 6 1.8132 6.1396 4.2830 24 6 1.3102 4.6946 4.3381 25 8 1.8737 3.9564 3.2504 26 6 2.1461 -0.9281 -1.0601 27 6 3.1923 -1.3135 -0.0010 28 6 2.1460 -0.9299 1.0586 29 1 -0.3633 -1.0081 0.1995 30 1 -0.3634 0.6769 0.7731 31 1 -0.3633 0.3311 -0.9729 32 1 0.9702 2.0762 1.5104 33 1 3.3074 3.6014 1.0783 34 1 2.0737 4.1219 -0.0945 35 1 3.1516 5.9510 1.9789 36 1 1.7782 6.3746 0.9276 37 1 1.5256 8.6618 3.7849 38 1 2.9744 8.1858 2.8670 39 1 2.2840 10.5127 1.8705 40 1 2.5952 13.4593 0.3340 41 1 2.8951 6.1536 4.4153 42 1 1.3414 6.7196 5.0762 43 1 1.6120 4.2398 5.2816 44 1 0.2230 4.6845 4.2604 45 1 2.5651 -0.3971 -1.9148 46 1 1.4955 -1.7527 -1.3515 47 1 3.4445 -2.3739 -0.0020 48 1 4.0711 -0.6685 -0.0004 49 1 1.4945 -1.7547 1.3475 50 1 2.5649 -0.4004 1.9143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714474643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -92.922061 kcal Electronic energy + Delta-G solvation = -29995.016455 eV Core-core repulsion = 25829.910361 eV Total energy + Delta-G solvation = -4165.106094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.88355 -39.79410 -38.14864 -37.61187 -35.50025 -34.85262 -33.84079 -31.86076 -31.26871 -30.23789 -29.11536 -26.91800 -25.92424 -25.30633 -24.03835 -23.87616 -22.45179 -21.44565 -20.50690 -19.27031 -19.17924 -17.90064 -16.84961 -16.68524 -16.31063 -16.22411 -15.80734 -15.51439 -15.20195 -15.04956 -14.68497 -14.50588 -14.33248 -14.12500 -13.79926 -13.68584 -13.56232 -13.34057 -13.20836 -12.87254 -12.77975 -12.41116 -12.34303 -11.97270 -11.74552 -11.62990 -11.53914 -11.29959 -11.22324 -11.18121 -10.96750 -10.60467 -10.56735 -10.51184 -10.41154 -10.24434 -9.89244 -9.66068 -9.50295 -9.16409 -8.51008 -8.04504 -7.96309 -6.44402 -3.85347 2.50267 2.96326 3.16247 3.25313 3.30947 3.59309 3.83593 3.86510 4.14145 4.19383 4.27673 4.43117 4.55421 4.72666 4.75888 4.91949 4.99884 5.05234 5.12884 5.13340 5.21181 5.26263 5.30570 5.35244 5.36931 5.38378 5.47639 5.52770 5.57787 5.63480 5.69925 5.72579 5.75564 5.82404 5.83340 5.85212 5.94467 6.03648 6.12951 6.15530 6.22777 6.30658 7.02973 7.08407 7.21777 7.39306 7.52724 8.03055 8.12184 8.58153 9.15109 9.50903 10.02125 10.73205 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002274 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.480531 B =12311.248696 C =13633.990551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.537 3.463 4 O -0.538 6.538 5 N -0.718 5.718 6 C 0.129 3.871 7 C 0.086 3.914 8 H 0.077 0.923 9 C 0.028 3.972 10 N -0.512 5.512 11 C 0.046 3.954 12 C 0.442 3.558 13 O -0.578 6.578 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.015 3.985 24 C 0.068 3.932 25 O -0.385 6.385 26 C -0.118 4.118 27 C -0.142 4.142 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.040 0.960 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -23.642 6.949 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C 0.322 3.678 4 O -0.414 6.414 5 N -0.370 5.370 6 C 0.005 3.995 7 C 0.028 3.972 8 H 0.095 0.905 9 C -0.101 4.101 10 N -0.237 5.237 11 C -0.085 4.085 12 C 0.227 3.773 13 O -0.462 6.462 14 N -0.199 5.199 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.114 4.114 24 C -0.009 4.009 25 O -0.304 6.304 26 C -0.155 4.155 27 C -0.179 4.179 28 C -0.159 4.159 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.796 -23.801 5.856 24.523 hybrid contribution 0.458 1.240 0.174 1.333 sum -0.338 -22.561 6.030 23.355 Atomic orbital electron populations 1.21735 0.92228 1.02639 1.02642 1.21960 0.96625 0.92295 1.00692 1.19918 0.82034 0.85714 0.80120 1.90701 1.31081 1.80435 1.39228 1.45833 1.41770 1.11919 1.37461 1.21362 0.98550 0.81408 0.98137 1.22352 0.99702 0.92102 0.83031 0.90537 1.22753 0.96508 0.92661 0.98156 1.61768 1.59123 1.01328 1.01476 1.21884 0.98236 0.88792 0.99567 1.19698 0.86473 0.83345 0.87792 1.90498 1.38101 1.62856 1.54765 1.41879 1.41206 1.12312 1.24541 1.19691 1.24396 0.97216 1.01545 0.87885 1.25271 0.96800 0.96520 0.99351 1.69614 1.33292 1.12394 1.38934 0.85855 0.78435 0.78884 0.81114 1.20385 1.20916 1.19387 1.22829 0.99280 0.96534 0.92728 1.22613 0.98130 0.90359 0.89769 1.87946 1.75563 1.52747 1.14140 1.22839 0.97601 0.97867 0.97223 1.22848 0.97571 1.01483 0.96027 1.22962 0.98250 0.98306 0.96419 0.91398 0.92154 0.91774 0.76205 0.90662 0.89407 0.94479 0.87072 0.89053 0.93344 0.77491 0.91842 0.94179 0.89636 0.88587 0.92197 0.90032 0.89499 0.91237 0.89767 0.89063 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.12 37.16 0.34 -0.60 16 2 C -0.11 -1.00 1.26 -154.85 -0.20 -1.20 16 3 C 0.54 6.61 6.66 -10.98 -0.07 6.53 16 4 O -0.54 -8.69 15.75 5.55 0.09 -8.61 16 5 N -0.72 -8.03 5.39 -60.29 -0.32 -8.35 16 6 C 0.13 1.66 5.34 -4.04 -0.02 1.64 16 7 C 0.09 1.14 2.84 -26.68 -0.08 1.06 16 8 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 9 C 0.03 0.44 4.58 -3.71 -0.02 0.42 16 10 N -0.51 -8.24 4.42 -235.75 -1.04 -9.28 16 11 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 12 C 0.44 10.18 7.35 -10.99 -0.08 10.10 16 13 O -0.58 -15.14 14.25 5.54 0.08 -15.06 16 14 N -0.56 -14.05 5.29 -10.97 -0.06 -14.11 16 15 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 19 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 C 0.01 0.18 5.65 -3.71 -0.02 0.16 16 24 C 0.07 0.73 7.01 37.21 0.26 0.99 16 25 O -0.38 -4.77 10.42 -35.23 -0.37 -5.14 16 26 C -0.12 -1.03 7.01 -25.92 -0.18 -1.21 16 27 C -0.14 -1.19 7.74 -25.92 -0.20 -1.39 16 28 C -0.12 -0.91 7.21 -25.92 -0.19 -1.09 16 29 H 0.07 0.36 7.94 -51.93 -0.41 -0.05 16 30 H 0.06 0.38 7.00 -51.93 -0.36 0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 3.70 7.36 -40.82 -0.30 3.40 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 2.11 6.10 -51.92 -0.32 1.80 16 37 H 0.09 1.42 8.04 -51.93 -0.42 1.01 16 38 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.88 7.43 -51.93 -0.39 0.49 16 46 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.86 8.07 -51.92 -0.42 0.44 16 49 H 0.09 0.51 7.96 -51.93 -0.41 0.10 16 50 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -32.70 400.81 -8.96 -41.66 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.35 Total: 12.22 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -0.72 Total: 8.32 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.70 Total: -55.39 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.20 Total: -28.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.70 -8.96 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714474643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.265 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds