Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 112.84609 * 2 1 4 4 O 1.21287 * 119.99585 * 228.80053 * 3 2 1 5 5 N 1.34777 * 120.00455 * 48.79526 * 3 2 1 6 6 C 1.46501 * 120.00124 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46791 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.50935 * 304.99995 * 7 6 5 9 9 C 1.53096 * 109.50367 * 184.91238 * 7 6 5 10 10 N 1.47013 * 109.26092 * 183.21569 * 9 7 6 11 11 C 1.46900 * 111.00450 * 182.39377 * 10 9 7 12 12 C 1.50695 * 109.46850 * 66.36506 * 11 10 9 13 13 O 1.21295 * 119.99994 * 6.28158 * 12 11 10 14 14 N 1.34773 * 120.00071 * 186.27436 * 12 11 10 15 15 C 1.37102 * 120.00504 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99532 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00307 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99628 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46924 * 89.99908 * 19 17 15 21 21 H 1.48498 * 109.46833 * 209.99835 * 19 17 15 22 22 H 1.48501 * 109.46895 * 330.00088 * 19 17 15 23 23 C 1.47015 * 110.74793 * 58.61847 * 10 9 7 24 24 C 1.53097 * 109.26000 * 301.38454 * 23 10 9 25 25 O 1.43018 * 109.29108 * 56.82992 * 24 23 10 26 26 C 1.53776 * 113.61945 * 228.79994 * 2 1 3 27 27 C 1.53781 * 87.07976 * 220.02059 * 26 2 1 28 28 C 1.53772 * 87.08392 * 25.42846 * 27 26 2 29 29 H 1.09000 * 109.46953 * 191.19567 * 1 2 3 30 30 H 1.08994 * 109.47832 * 311.20391 * 1 2 3 31 31 H 1.09002 * 109.46961 * 71.20616 * 1 2 3 32 32 H 0.96998 * 119.99493 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.47305 * 300.00564 * 6 5 3 34 34 H 1.09006 * 109.46723 * 60.00746 * 6 5 3 35 35 H 1.09002 * 109.51398 * 303.15862 * 9 7 6 36 36 H 1.09007 * 109.50799 * 63.28793 * 9 7 6 37 37 H 1.08996 * 109.47244 * 186.36644 * 11 10 9 38 38 H 1.09003 * 109.46905 * 306.36524 * 11 10 9 39 39 H 0.96999 * 119.99953 * 0.02562 * 14 12 11 40 40 H 0.97009 * 119.99624 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.50635 * 61.31980 * 23 10 9 42 42 H 1.09003 * 109.51077 * 181.44935 * 23 10 9 43 43 H 1.09000 * 109.50743 * 176.77972 * 24 23 10 44 44 H 1.08998 * 109.50839 * 296.86972 * 24 23 10 45 45 H 1.09001 * 113.61716 * 105.47067 * 26 2 1 46 46 H 1.09005 * 113.68780 * 334.57903 * 26 2 1 47 47 H 1.09003 * 113.61514 * 139.98604 * 27 26 2 48 48 H 1.09008 * 113.60899 * 270.87965 * 27 26 2 49 49 H 1.09006 * 113.61254 * 89.11823 * 28 27 26 50 50 H 1.09001 * 113.62105 * 220.01893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 8 2.9881 1.6790 -0.7904 5 7 1.6682 2.3084 0.8781 6 6 2.2375 3.6583 0.8784 7 6 1.5601 4.4971 1.9641 8 1 0.4804 4.4811 1.8158 9 6 2.0657 5.9400 1.8851 10 7 1.4706 6.7229 2.9778 11 6 1.8864 8.1299 2.9046 12 6 1.3078 8.7608 1.6643 13 8 0.5262 8.1392 0.9759 14 7 1.6587 10.0157 1.3201 15 6 1.1328 10.5895 0.1915 16 1 0.4370 10.0360 -0.4215 17 6 1.4950 11.8831 -0.1636 18 7 2.3420 12.5563 0.5821 19 14 0.7778 12.6650 -1.7010 20 1 -0.4780 13.3777 -1.3541 21 1 1.7543 13.6299 -2.2672 22 1 0.4869 11.6091 -2.7038 23 6 1.8132 6.1396 4.2830 24 6 1.3102 4.6946 4.3381 25 8 1.8737 3.9564 3.2504 26 6 2.1461 -0.9281 -1.0601 27 6 3.1923 -1.3135 -0.0010 28 6 2.1460 -0.9299 1.0586 29 1 -0.3633 -1.0081 0.1995 30 1 -0.3634 0.6769 0.7731 31 1 -0.3633 0.3311 -0.9729 32 1 0.9702 2.0762 1.5104 33 1 3.3074 3.6014 1.0783 34 1 2.0737 4.1219 -0.0945 35 1 3.1516 5.9510 1.9789 36 1 1.7782 6.3746 0.9276 37 1 1.5256 8.6618 3.7849 38 1 2.9744 8.1858 2.8670 39 1 2.2840 10.5127 1.8705 40 1 2.5952 13.4593 0.3340 41 1 2.8951 6.1536 4.4153 42 1 1.3414 6.7196 5.0762 43 1 1.6120 4.2398 5.2816 44 1 0.2230 4.6845 4.2604 45 1 2.5651 -0.3971 -1.9148 46 1 1.4955 -1.7527 -1.3515 47 1 3.4445 -2.3739 -0.0020 48 1 4.0711 -0.6685 -0.0004 49 1 1.4945 -1.7547 1.3475 50 1 2.5649 -0.4004 1.9143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714474643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = -118.079592 kcal Electronic energy + Delta-G solvation = -29996.107367 eV Core-core repulsion = 25829.910361 eV Total energy + Delta-G solvation = -4166.197006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.76070 -40.98720 -39.80768 -38.52240 -36.79255 -36.02949 -35.70523 -33.30219 -32.84484 -30.92986 -30.38947 -28.14202 -26.93710 -26.53378 -25.32447 -24.84771 -23.47696 -22.33769 -21.59774 -21.02647 -20.12365 -19.89233 -17.94909 -17.71414 -17.54727 -17.35724 -17.04795 -16.60403 -16.43592 -16.26633 -16.04983 -15.82463 -15.57957 -15.23144 -15.17482 -14.90545 -14.66862 -14.42493 -14.14017 -13.92907 -13.79916 -13.51017 -13.46906 -13.22660 -13.08803 -13.03844 -12.86162 -12.43535 -12.40208 -12.29651 -12.22043 -12.14308 -11.87773 -11.63551 -11.45378 -11.24559 -11.19240 -10.88991 -10.71050 -10.26631 -10.21046 -10.01685 -9.35303 -8.48152 -5.96582 1.36307 1.40274 1.52728 1.53944 2.00492 2.03141 2.26495 2.58024 2.68289 3.18596 3.29138 3.46061 3.59826 3.67110 3.81501 3.84317 3.91511 3.95490 4.01145 4.08847 4.20059 4.28457 4.32947 4.43200 4.47352 4.52864 4.56577 4.59269 4.71245 4.75375 4.79713 4.83879 4.84810 4.86171 4.89694 4.99961 5.03224 5.13534 5.19824 5.29616 5.32360 5.39568 5.49683 5.74213 5.94195 6.04446 6.12596 6.47884 6.58651 7.11474 7.17442 7.54752 8.10143 8.69211 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002274 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.480531 B =12311.248696 C =13633.990551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.529 3.471 4 O -0.585 6.585 5 N -0.707 5.707 6 C 0.135 3.865 7 C 0.105 3.895 8 H 0.074 0.926 9 C 0.030 3.970 10 N -0.529 5.529 11 C 0.058 3.942 12 C 0.440 3.560 13 O -0.613 6.613 14 N -0.574 5.574 15 C -0.330 4.330 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.274 1.274 23 C 0.013 3.987 24 C 0.066 3.934 25 O -0.385 6.385 26 C -0.119 4.119 27 C -0.146 4.146 28 C -0.108 4.108 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.415 0.585 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.046 0.954 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.123 0.877 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 -25.273 8.942 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C 0.317 3.683 4 O -0.465 6.465 5 N -0.359 5.359 6 C 0.011 3.989 7 C 0.046 3.954 8 H 0.092 0.908 9 C -0.099 4.099 10 N -0.254 5.254 11 C -0.073 4.073 12 C 0.227 3.773 13 O -0.499 6.499 14 N -0.212 5.212 15 C -0.460 4.460 16 H 0.097 0.903 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.815 3.185 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.114 4.114 24 C -0.010 4.010 25 O -0.304 6.304 26 C -0.157 4.157 27 C -0.183 4.183 28 C -0.145 4.145 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.253 0.747 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.125 0.875 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.133 0.867 47 H 0.108 0.892 48 H 0.074 0.926 49 H 0.141 0.859 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.679 -25.441 7.905 26.694 hybrid contribution 0.743 1.712 -0.398 1.908 sum -0.937 -23.729 7.507 24.906 Atomic orbital electron populations 1.21765 0.90302 1.04440 1.02461 1.21989 0.97947 0.90036 1.01786 1.20678 0.81320 0.87123 0.79190 1.90678 1.33286 1.81475 1.41067 1.45741 1.41687 1.11035 1.37464 1.21145 0.98116 0.82325 0.97357 1.22033 0.99138 0.90424 0.83807 0.90822 1.22619 0.96556 0.94058 0.96643 1.61748 1.59659 1.00652 1.03316 1.21768 0.98736 0.89730 0.97085 1.20737 0.85258 0.82446 0.88818 1.90475 1.39546 1.63511 1.56376 1.41949 1.41725 1.13184 1.24325 1.19633 1.25383 0.98075 1.02909 0.90316 1.26028 0.96884 0.96432 1.02003 1.69672 1.33669 1.12767 1.40030 0.84948 0.78157 0.77876 0.77496 1.19516 1.19623 1.19884 1.23002 1.00012 0.97550 0.90842 1.22865 0.98365 0.89468 0.90351 1.87954 1.75768 1.52804 1.13903 1.22915 0.98182 0.98361 0.96202 1.22828 0.96823 1.02122 0.96553 1.22991 0.97826 0.98409 0.95314 0.88771 0.91521 0.92662 0.74741 0.91621 0.91156 0.94417 0.91006 0.86471 0.91800 0.77059 0.91328 0.93587 0.87545 0.85111 0.91875 0.92980 0.86733 0.89180 0.92617 0.85930 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.12 71.98 0.66 -0.88 16 2 C -0.11 -1.91 1.26 -52.40 -0.07 -1.98 16 3 C 0.53 13.34 6.66 87.66 0.58 13.92 16 4 O -0.59 -20.13 15.75 -3.05 -0.05 -20.18 16 5 N -0.71 -15.87 5.39 -463.04 -2.49 -18.36 16 6 C 0.14 3.62 5.34 86.38 0.46 4.08 16 7 C 0.10 2.75 2.84 30.63 0.09 2.84 16 8 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 9 C 0.03 0.98 4.58 86.31 0.40 1.37 16 10 N -0.53 -16.48 4.42 -899.78 -3.98 -20.45 16 11 C 0.06 1.96 5.45 85.56 0.47 2.43 16 12 C 0.44 20.74 7.35 87.66 0.64 21.39 16 13 O -0.61 -33.35 14.25 -3.08 -0.04 -33.39 16 14 N -0.57 -29.41 5.29 -306.99 -1.62 -31.03 16 15 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 16 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 17 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 18 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 19 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 C 0.01 0.29 5.65 86.31 0.49 0.78 16 24 C 0.07 1.20 7.01 72.01 0.50 1.71 16 25 O -0.39 -8.79 10.42 -148.98 -1.55 -10.35 16 26 C -0.12 -1.99 7.01 31.12 0.22 -1.77 16 27 C -0.15 -2.30 7.74 31.12 0.24 -2.06 16 28 C -0.11 -1.36 7.21 31.12 0.22 -1.13 16 29 H 0.09 0.63 7.94 -2.39 -0.02 0.62 16 30 H 0.07 0.69 7.00 -2.39 -0.02 0.67 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.42 7.15 7.36 -92.71 -0.68 6.46 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 2.90 6.10 -2.38 -0.01 2.89 16 37 H 0.12 3.40 8.04 -2.39 -0.02 3.38 16 38 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 39 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 40 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 1.88 8.09 -2.39 -0.02 1.86 16 43 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.18 7.43 -2.39 -0.02 1.16 16 46 H 0.11 1.26 8.10 -2.38 -0.02 1.24 16 47 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 1.19 8.07 -2.38 -0.02 1.17 16 49 H 0.12 0.83 7.96 -2.38 -0.02 0.81 16 50 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -74.23 400.81 -1.71 -75.94 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -0.46 Total: 39.62 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.18 Total: 22.46 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -7.81 Total: -119.39 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -1.64 Total: -63.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -74.23 -1.71 -75.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714474643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.142 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds