Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00350 * 2 1 4 4 H 1.48504 * 109.47398 * 270.00297 * 3 2 1 5 5 H 1.48497 * 109.47170 * 30.00087 * 3 2 1 6 6 H 1.48501 * 109.47371 * 150.00115 * 3 2 1 7 7 C 1.38958 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00103 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00249 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99622 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00281 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47118 * 173.86341 * 12 10 9 14 14 C 1.47900 * 110.99945 * 183.36387 * 13 12 10 15 15 C 1.53987 * 107.05916 * 145.84346 * 14 13 12 16 16 C 1.54590 * 105.14260 * 358.76975 * 15 14 13 17 17 H 1.09008 * 110.72537 * 96.40235 * 16 15 14 18 18 C 1.52995 * 110.72733 * 219.68639 * 16 15 14 19 19 N 1.46501 * 109.47140 * 293.54388 * 18 16 15 20 20 C 1.34779 * 120.00001 * 179.97438 * 19 18 16 21 21 O 1.21285 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.99855 * 180.02562 * 20 19 18 23 23 C 1.53008 * 109.47267 * 180.02562 * 22 20 19 24 24 H 1.09003 * 109.86531 * 54.29329 * 23 22 20 25 25 C 1.54095 * 109.88030 * 175.30490 * 23 22 20 26 26 C 1.54806 * 104.18843 * 121.45172 * 25 23 22 27 27 C 1.55002 * 102.09244 * 20.88110 * 26 25 23 28 28 O 1.43739 * 109.87663 * 293.29176 * 23 22 20 29 29 C 1.48533 * 110.99781 * 300.75462 * 13 12 10 30 30 H 0.97001 * 119.99210 * 359.97438 * 1 2 3 31 31 H 0.97012 * 119.99999 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47086 * 53.86115 * 12 10 9 33 33 H 1.08996 * 109.47075 * 293.85834 * 12 10 9 34 34 H 1.08996 * 109.91724 * 26.48322 * 14 13 12 35 35 H 1.09005 * 109.91382 * 265.19798 * 14 13 12 36 36 H 1.09003 * 110.31050 * 239.85391 * 15 14 13 37 37 H 1.09003 * 110.39381 * 117.73359 * 15 14 13 38 38 H 1.08996 * 109.47458 * 53.54389 * 18 16 15 39 39 H 1.09003 * 109.47261 * 173.54659 * 18 16 15 40 40 H 0.97000 * 119.99912 * 0.02562 * 19 18 16 41 41 H 1.09002 * 109.47078 * 300.00058 * 22 20 19 42 42 H 1.08993 * 109.47328 * 59.99803 * 22 20 19 43 43 H 1.09003 * 110.48331 * 240.12912 * 25 23 22 44 44 H 1.09001 * 110.48712 * 2.64059 * 25 23 22 45 45 H 1.09008 * 110.90721 * 139.07369 * 26 25 23 46 46 H 1.08993 * 110.91343 * 262.68172 * 26 25 23 47 47 H 1.09000 * 110.61765 * 81.47348 * 27 26 25 48 48 H 1.08989 * 110.61597 * 204.31562 * 27 26 25 49 49 H 1.09000 * 110.66989 * 81.84659 * 29 13 12 50 50 H 1.08999 * 110.66924 * 318.71250 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4471 -3.4211 -0.0001 12 6 5.5607 -2.3707 -0.0011 13 7 6.0503 -3.7478 0.1470 14 6 7.5265 -3.7792 0.2318 15 6 7.8998 -4.9299 1.1845 16 6 6.5501 -5.5204 1.6529 17 1 6.2791 -6.3882 1.0513 18 6 6.6047 -5.8851 3.1378 19 7 7.5488 -6.9877 3.3355 20 6 7.7617 -7.4790 4.5723 21 8 7.1714 -7.0086 5.5217 22 6 8.7333 -8.6129 4.7757 23 6 8.7879 -8.9777 6.2607 24 1 7.7831 -9.1872 6.6278 25 6 9.6882 -10.2116 6.4644 26 6 10.7892 -9.7217 7.4361 27 6 10.1181 -8.4879 8.0919 28 8 9.3658 -7.8950 7.0090 29 6 5.5591 -4.3543 1.4107 30 1 -0.4849 0.8401 0.0004 31 1 3.8649 -0.3634 -0.0014 32 1 5.9240 -1.7647 0.8288 33 1 5.9240 -1.9551 -0.9409 34 1 7.8958 -2.8337 0.6289 35 1 7.9514 -3.9617 -0.7553 36 1 8.4619 -4.5482 2.0369 37 1 8.4811 -5.6863 0.6571 38 1 6.9322 -5.0190 3.7128 39 1 5.6138 -6.1906 3.4736 40 1 8.0212 -7.3637 2.5763 41 1 8.4061 -9.4793 4.2009 42 1 9.7240 -8.3072 4.4397 43 1 9.1208 -11.0281 6.9111 44 1 10.1251 -10.5257 5.5165 45 1 11.0166 -10.4832 8.1822 46 1 11.6879 -9.4320 6.8916 47 1 9.4505 -8.7965 8.8964 48 1 10.8714 -7.7941 8.4646 49 1 4.5439 -4.7316 1.2874 50 1 5.6063 -3.6337 2.2271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714623958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -111.881341 kcal Electronic energy + Delta-G solvation = -29056.134034 eV Core-core repulsion = 24890.205804 eV Total energy + Delta-G solvation = -4165.928230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.35550 -39.54512 -38.91485 -37.73410 -35.07590 -33.94060 -32.87897 -32.25193 -31.80141 -31.52955 -29.44911 -27.56948 -26.77492 -24.92546 -23.78644 -22.64311 -21.50345 -21.17712 -20.39490 -20.19291 -19.35242 -18.27552 -17.52944 -16.72943 -16.39090 -16.33081 -16.08151 -15.63785 -15.35546 -15.13540 -14.94036 -14.70198 -14.46934 -14.02815 -13.80577 -13.64913 -13.43708 -13.06557 -12.93194 -12.81504 -12.56786 -12.40155 -12.20078 -12.10725 -11.91297 -11.77038 -11.67557 -11.51600 -11.33768 -11.15724 -11.10523 -11.05494 -10.83274 -10.61444 -10.58491 -9.99021 -9.96630 -9.88829 -9.53564 -9.17305 -8.53731 -8.18451 -8.05956 -6.30204 -3.81447 2.55149 2.98536 3.03499 3.07675 3.15955 3.51156 3.74429 4.01409 4.08439 4.11367 4.26056 4.46430 4.49299 4.57915 4.59809 4.71682 4.73357 4.83558 4.92893 4.98202 5.09475 5.18240 5.22187 5.23954 5.25363 5.30991 5.34818 5.42871 5.45144 5.57149 5.60412 5.68388 5.68814 5.70941 5.75728 5.78834 5.84994 5.92810 6.05214 6.19916 6.33406 6.49105 6.60288 7.10078 7.15075 7.35253 7.59291 8.12681 8.15446 8.60950 8.96123 9.43340 9.83916 10.82885 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.001745 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.136455 B =16038.771094 C =16501.533334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.560 6.560 12 C 0.034 3.966 13 N -0.493 5.493 14 C 0.033 3.967 15 C -0.125 4.125 16 C -0.105 4.105 17 H 0.090 0.910 18 C 0.129 3.871 19 N -0.731 5.731 20 C 0.510 3.490 21 O -0.527 6.527 22 C -0.141 4.141 23 C 0.092 3.908 24 H 0.076 0.924 25 C -0.154 4.154 26 C -0.156 4.156 27 C 0.042 3.958 28 O -0.359 6.359 29 C 0.047 3.953 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.110 0.890 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.875 -17.464 9.631 32.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.230 5.230 10 C 0.237 3.763 11 O -0.442 6.442 12 C -0.098 4.098 13 N -0.217 5.217 14 C -0.095 4.095 15 C -0.164 4.164 16 C -0.125 4.125 17 H 0.109 0.891 18 C 0.005 3.995 19 N -0.384 5.384 20 C 0.296 3.704 21 O -0.402 6.402 22 C -0.181 4.181 23 C 0.033 3.967 24 H 0.094 0.906 25 C -0.191 4.191 26 C -0.193 4.193 27 C -0.034 4.034 28 O -0.278 6.278 29 C -0.081 4.081 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.233 0.767 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.109 0.891 49 H 0.129 0.871 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 24.583 -17.744 9.816 31.868 hybrid contribution 1.168 1.635 0.252 2.025 sum 25.751 -16.109 10.068 32.000 Atomic orbital electron populations 1.69623 1.05631 1.27476 1.49355 1.25036 0.95489 0.97958 0.97653 0.86676 0.79769 0.84088 0.78881 1.19603 1.20181 1.19557 1.19429 0.79198 0.96635 1.48056 0.86241 1.42212 1.07553 1.06129 1.67081 1.19610 0.88037 0.84580 0.84078 1.90528 1.69386 1.30744 1.53549 1.22121 0.95593 0.90143 1.01914 1.64536 1.05145 1.16914 1.35100 1.22911 0.89380 0.97484 0.99737 1.22478 0.97016 0.97912 0.98945 1.22363 0.95869 0.99744 0.94480 0.89146 1.21353 0.93342 0.89315 0.95473 1.46024 1.45826 1.37409 1.09114 1.20524 0.82952 0.84187 0.82739 1.90754 1.49087 1.60023 1.40351 1.21927 1.00500 0.98264 0.97426 1.22453 0.97495 0.86188 0.90533 0.90574 1.23037 0.97190 0.98116 1.00789 1.23131 0.98773 0.98399 0.99024 1.23587 0.94591 0.94614 0.90648 1.89069 1.67992 1.28926 1.41779 1.23304 1.00544 0.94379 0.89841 0.91623 0.79727 0.93367 0.88983 0.93954 0.90393 0.91420 0.91155 0.91475 0.91007 0.76750 0.87715 0.88230 0.90344 0.90177 0.90223 0.90494 0.92190 0.89065 0.87143 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.54 27.73 -169.99 -4.71 14.82 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 7 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 10 C 0.45 10.28 7.42 -10.99 -0.08 10.20 16 11 O -0.56 -14.83 13.87 5.54 0.08 -14.75 16 12 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 13 N -0.49 -7.83 5.11 -231.90 -1.19 -9.02 16 14 C 0.03 0.39 6.70 -2.76 -0.02 0.37 16 15 C -0.13 -1.21 6.20 -25.38 -0.16 -1.37 16 16 C -0.11 -1.20 3.13 -88.76 -0.28 -1.48 16 17 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 18 C 0.13 1.49 5.00 -4.04 -0.02 1.46 16 19 N -0.73 -6.79 5.40 -60.29 -0.33 -7.11 16 20 C 0.51 5.67 7.73 -10.98 -0.08 5.58 16 21 O -0.53 -8.43 15.50 -6.38 -0.10 -8.52 16 22 C -0.14 -1.00 5.19 -27.88 -0.14 -1.14 16 23 C 0.09 0.77 2.93 -26.16 -0.08 0.69 16 24 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 25 C -0.15 -0.79 6.64 -25.21 -0.17 -0.96 16 26 C -0.16 -0.78 7.16 -24.72 -0.18 -0.96 16 27 C 0.04 0.31 7.72 38.21 0.30 0.60 16 28 O -0.36 -3.97 10.57 -47.17 -0.50 -4.47 16 29 C 0.05 0.74 5.03 -1.90 -0.01 0.73 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.37 7.82 5.76 -40.81 -0.24 7.59 16 32 H 0.05 0.74 7.98 -51.93 -0.41 0.32 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.04 0.47 7.68 -51.93 -0.40 0.07 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.63 7.80 -51.93 -0.41 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.40 2.49 8.33 -40.82 -0.34 2.15 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.30 7.70 -51.93 -0.40 -0.10 16 45 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 0.56 8.14 -51.94 -0.42 0.14 16 49 H 0.11 2.11 6.43 -51.93 -0.33 1.78 16 50 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -36.37 398.78 -9.61 -45.98 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.40 Total: 9.84 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.19 Total: 6.55 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.79 Total: -55.45 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.52 Total: -27.75 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.37 -9.61 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714623958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.903 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds