Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00350 * 2 1 4 4 H 1.48504 * 109.47398 * 270.00297 * 3 2 1 5 5 H 1.48497 * 109.47170 * 30.00087 * 3 2 1 6 6 H 1.48501 * 109.47371 * 150.00115 * 3 2 1 7 7 C 1.38958 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00103 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00249 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99622 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00281 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47118 * 173.86341 * 12 10 9 14 14 C 1.47900 * 110.99945 * 183.36387 * 13 12 10 15 15 C 1.53987 * 107.05916 * 145.84346 * 14 13 12 16 16 C 1.54590 * 105.14260 * 358.76975 * 15 14 13 17 17 H 1.09008 * 110.72537 * 96.40235 * 16 15 14 18 18 C 1.52995 * 110.72733 * 219.68639 * 16 15 14 19 19 N 1.46501 * 109.47140 * 293.54388 * 18 16 15 20 20 C 1.34779 * 120.00001 * 179.97438 * 19 18 16 21 21 O 1.21285 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.99855 * 180.02562 * 20 19 18 23 23 C 1.53008 * 109.47267 * 180.02562 * 22 20 19 24 24 H 1.09003 * 109.86531 * 54.29329 * 23 22 20 25 25 C 1.54095 * 109.88030 * 175.30490 * 23 22 20 26 26 C 1.54806 * 104.18843 * 121.45172 * 25 23 22 27 27 C 1.55002 * 102.09244 * 20.88110 * 26 25 23 28 28 O 1.43739 * 109.87663 * 293.29176 * 23 22 20 29 29 C 1.48533 * 110.99781 * 300.75462 * 13 12 10 30 30 H 0.97001 * 119.99210 * 359.97438 * 1 2 3 31 31 H 0.97012 * 119.99999 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47086 * 53.86115 * 12 10 9 33 33 H 1.08996 * 109.47075 * 293.85834 * 12 10 9 34 34 H 1.08996 * 109.91724 * 26.48322 * 14 13 12 35 35 H 1.09005 * 109.91382 * 265.19798 * 14 13 12 36 36 H 1.09003 * 110.31050 * 239.85391 * 15 14 13 37 37 H 1.09003 * 110.39381 * 117.73359 * 15 14 13 38 38 H 1.08996 * 109.47458 * 53.54389 * 18 16 15 39 39 H 1.09003 * 109.47261 * 173.54659 * 18 16 15 40 40 H 0.97000 * 119.99912 * 0.02562 * 19 18 16 41 41 H 1.09002 * 109.47078 * 300.00058 * 22 20 19 42 42 H 1.08993 * 109.47328 * 59.99803 * 22 20 19 43 43 H 1.09003 * 110.48331 * 240.12912 * 25 23 22 44 44 H 1.09001 * 110.48712 * 2.64059 * 25 23 22 45 45 H 1.09008 * 110.90721 * 139.07369 * 26 25 23 46 46 H 1.08993 * 110.91343 * 262.68172 * 26 25 23 47 47 H 1.09000 * 110.61765 * 81.47348 * 27 26 25 48 48 H 1.08989 * 110.61597 * 204.31562 * 27 26 25 49 49 H 1.09000 * 110.66989 * 81.84659 * 29 13 12 50 50 H 1.08999 * 110.66924 * 318.71250 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4471 -3.4211 -0.0001 12 6 5.5607 -2.3707 -0.0011 13 7 6.0503 -3.7478 0.1470 14 6 7.5265 -3.7792 0.2318 15 6 7.8998 -4.9299 1.1845 16 6 6.5501 -5.5204 1.6529 17 1 6.2791 -6.3882 1.0513 18 6 6.6047 -5.8851 3.1378 19 7 7.5488 -6.9877 3.3355 20 6 7.7617 -7.4790 4.5723 21 8 7.1714 -7.0086 5.5217 22 6 8.7333 -8.6129 4.7757 23 6 8.7879 -8.9777 6.2607 24 1 7.7831 -9.1872 6.6278 25 6 9.6882 -10.2116 6.4644 26 6 10.7892 -9.7217 7.4361 27 6 10.1181 -8.4879 8.0919 28 8 9.3658 -7.8950 7.0090 29 6 5.5591 -4.3543 1.4107 30 1 -0.4849 0.8401 0.0004 31 1 3.8649 -0.3634 -0.0014 32 1 5.9240 -1.7647 0.8288 33 1 5.9240 -1.9551 -0.9409 34 1 7.8958 -2.8337 0.6289 35 1 7.9514 -3.9617 -0.7553 36 1 8.4619 -4.5482 2.0369 37 1 8.4811 -5.6863 0.6571 38 1 6.9322 -5.0190 3.7128 39 1 5.6138 -6.1906 3.4736 40 1 8.0212 -7.3637 2.5763 41 1 8.4061 -9.4793 4.2009 42 1 9.7240 -8.3072 4.4397 43 1 9.1208 -11.0281 6.9111 44 1 10.1251 -10.5257 5.5165 45 1 11.0166 -10.4832 8.1822 46 1 11.6879 -9.4320 6.8916 47 1 9.4505 -8.7965 8.8964 48 1 10.8714 -7.7941 8.4646 49 1 4.5439 -4.7316 1.2874 50 1 5.6063 -3.6337 2.2271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714623958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = -141.912608 kcal Electronic energy + Delta-G solvation = -29057.436288 eV Core-core repulsion = 24890.205804 eV Total energy + Delta-G solvation = -4167.230484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18131 -40.74833 -39.88492 -39.18089 -36.23751 -35.84633 -33.82026 -33.57215 -33.02365 -32.40309 -30.43139 -28.77636 -27.77162 -26.26771 -25.18556 -23.20396 -22.39518 -21.93082 -21.33466 -21.26315 -21.07335 -20.20154 -18.28273 -17.93303 -17.38694 -17.11322 -16.91616 -16.80857 -16.61649 -16.35997 -16.20215 -15.82349 -15.68457 -15.12084 -14.91256 -14.60877 -14.49959 -14.44782 -14.30548 -14.11939 -13.76944 -13.46916 -13.23352 -12.99870 -12.96137 -12.85248 -12.54970 -12.45762 -12.38669 -12.22175 -12.06355 -11.99562 -11.97960 -11.89322 -11.54763 -11.50968 -11.48100 -10.82887 -10.62396 -10.35767 -10.25217 -10.09562 -9.33164 -8.42720 -6.03417 1.28470 1.33831 1.42658 1.70924 1.93541 2.17374 2.21420 2.68041 2.98908 3.13033 3.18908 3.59956 3.64614 3.70869 3.80052 3.86884 3.98077 4.05884 4.14925 4.15185 4.29114 4.32131 4.33327 4.34379 4.40527 4.50727 4.56389 4.65408 4.67265 4.76202 4.78636 4.83005 4.84820 4.95737 4.98846 5.00878 5.10255 5.13990 5.23418 5.25342 5.30531 5.45537 5.51405 5.86719 5.93042 6.04611 6.07469 6.58246 6.60964 6.86915 7.33327 7.37991 7.95162 8.74946 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.001745 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.136455 B =16038.771094 C =16501.533334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.234 1.234 7 C -0.328 4.328 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.449 3.551 11 O -0.605 6.605 12 C 0.045 3.955 13 N -0.514 5.514 14 C 0.032 3.968 15 C -0.115 4.115 16 C -0.088 4.088 17 H 0.095 0.905 18 C 0.137 3.863 19 N -0.715 5.715 20 C 0.503 3.497 21 O -0.585 6.585 22 C -0.131 4.131 23 C 0.081 3.919 24 H 0.049 0.951 25 C -0.145 4.145 26 C -0.148 4.148 27 C 0.031 3.969 28 O -0.397 6.397 29 C 0.044 3.956 30 H 0.279 0.721 31 H 0.389 0.611 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.418 0.582 41 H 0.140 0.860 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.097 0.903 49 H 0.063 0.937 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.987 -17.291 8.708 36.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.157 1.157 7 C -0.457 4.457 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.236 3.764 11 O -0.489 6.489 12 C -0.086 4.086 13 N -0.239 5.239 14 C -0.095 4.095 15 C -0.152 4.152 16 C -0.108 4.108 17 H 0.113 0.887 18 C 0.012 3.988 19 N -0.368 5.368 20 C 0.291 3.709 21 O -0.465 6.465 22 C -0.171 4.171 23 C 0.023 3.977 24 H 0.067 0.933 25 C -0.183 4.183 26 C -0.185 4.185 27 C -0.046 4.046 28 O -0.317 6.317 29 C -0.084 4.084 30 H 0.089 0.911 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.255 0.745 41 H 0.158 0.842 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.081 0.919 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 29.755 -17.606 8.856 35.689 hybrid contribution -0.519 1.455 0.559 1.643 sum 29.235 -16.151 9.414 34.701 Atomic orbital electron populations 1.69807 1.08117 1.29224 1.50307 1.26112 0.96474 1.02692 0.96079 0.85366 0.79372 0.76764 0.80023 1.17905 1.20022 1.15731 1.18999 0.81452 0.94933 1.50357 0.92677 1.42043 1.05847 1.07553 1.67930 1.20878 0.90821 0.83390 0.81282 1.90523 1.71287 1.32485 1.54629 1.22071 0.90295 0.91747 1.04519 1.64495 1.08164 1.16218 1.35007 1.23054 0.86153 0.98965 1.01361 1.22475 0.95684 0.97982 0.99106 1.22168 0.96121 0.98331 0.94160 0.88675 1.21077 0.92678 0.89601 0.95395 1.45850 1.44975 1.36402 1.09578 1.21370 0.82765 0.84586 0.82158 1.90734 1.51489 1.62025 1.42248 1.22009 1.00302 0.97667 0.97099 1.22590 0.96910 0.87201 0.91001 0.93331 1.23024 0.96587 0.96577 1.02113 1.23119 0.98682 0.97490 0.99254 1.23786 0.94655 0.95952 0.90164 1.89030 1.68655 1.31006 1.42995 1.23132 0.99485 0.95903 0.89909 0.91148 0.77564 0.90751 0.85921 0.92587 0.88647 0.90563 0.87940 0.92812 0.93604 0.74455 0.84196 0.85876 0.89588 0.87796 0.88569 0.89677 0.92603 0.88521 0.91881 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.96 21.67 0.30 -56.88 16 2 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.96 39.56 27.73 68.60 1.90 41.47 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.23 -8.15 6.52 99.48 0.65 -7.51 16 7 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 8 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 9 N -0.59 -28.60 5.09 -306.99 -1.56 -30.16 16 10 C 0.45 20.77 7.42 87.66 0.65 21.42 16 11 O -0.61 -33.97 13.87 -3.08 -0.04 -34.02 16 12 C 0.05 1.44 5.30 85.56 0.45 1.89 16 13 N -0.51 -15.52 5.11 -887.59 -4.54 -20.06 16 14 C 0.03 0.62 6.70 86.44 0.58 1.20 16 15 C -0.11 -1.79 6.20 31.47 0.19 -1.59 16 16 C -0.09 -1.92 3.13 -9.59 -0.03 -1.95 16 17 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 18 C 0.14 3.19 5.00 86.38 0.43 3.62 16 19 N -0.71 -12.24 5.40 -463.06 -2.50 -14.74 16 20 C 0.50 10.90 7.73 87.66 0.68 11.58 16 21 O -0.59 -19.61 15.50 8.37 0.13 -19.48 16 22 C -0.13 -1.55 5.19 29.85 0.15 -1.40 16 23 C 0.08 1.30 2.93 30.97 0.09 1.39 16 24 H 0.05 1.00 7.94 -2.39 -0.02 0.98 16 25 C -0.15 -1.12 6.64 31.58 0.21 -0.91 16 26 C -0.15 -1.14 7.16 31.90 0.23 -0.91 16 27 C 0.03 0.43 7.72 72.67 0.56 0.99 16 28 O -0.40 -8.85 10.57 -137.57 -1.45 -10.31 16 29 C 0.04 1.42 5.03 86.65 0.44 1.85 16 30 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.39 15.61 5.76 -92.70 -0.53 15.07 16 32 H 0.07 2.02 7.98 -2.39 -0.02 2.00 16 33 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 35 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.08 1.12 7.80 -2.39 -0.02 1.10 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.41 8.07 -2.39 -0.02 1.39 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.42 3.87 8.33 -92.71 -0.77 3.10 16 41 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.10 0.33 7.70 -2.39 -0.02 0.31 16 45 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.06 2.61 6.43 -2.39 -0.02 2.60 16 50 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 Total: -1.00 -89.83 398.78 -2.22 -92.05 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.42 Total: 34.08 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 5.96 Total: 18.05 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -8.30 Total: -121.85 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -1.37 Total: -63.80 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.90 Total: 41.47 kcal Total: -89.83 -2.22 -92.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714623958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.862 kcal (2) G-P(sol) polarization free energy of solvation -89.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds