Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.55805 * 2 1 4 4 C 1.53002 * 117.50072 * 214.31009 * 2 1 3 5 5 C 1.52998 * 59.99922 * 252.50861 * 4 2 1 6 6 H 1.08998 * 117.49919 * 107.51115 * 5 4 2 7 7 C 1.50702 * 117.50060 * 252.50838 * 5 4 2 8 8 O 1.21281 * 119.99835 * 68.60785 * 7 5 4 9 9 N 1.34772 * 119.99906 * 248.61190 * 7 5 4 10 10 C 1.46506 * 119.99887 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.54474 * 305.11117 * 11 10 9 13 13 C 1.53103 * 109.50526 * 184.99862 * 11 10 9 14 14 N 1.47016 * 109.29298 * 183.24310 * 13 11 10 15 15 C 1.46894 * 110.99844 * 182.37346 * 14 13 11 16 16 C 1.50698 * 109.47251 * 169.99743 * 15 14 13 17 17 O 1.21298 * 120.00204 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00322 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00145 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99899 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99964 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99990 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99911 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47281 * 90.00598 * 23 21 19 25 25 H 1.48500 * 109.47292 * 210.00463 * 23 21 19 26 26 H 1.48503 * 109.47341 * 330.00261 * 23 21 19 27 27 C 1.47009 * 110.75376 * 58.59374 * 14 13 11 28 28 C 1.53093 * 109.26071 * 301.38357 * 27 14 13 29 29 O 1.43015 * 109.25965 * 56.84798 * 28 27 14 30 30 H 1.09001 * 109.46801 * 274.30882 * 1 2 3 31 31 H 1.08998 * 109.46885 * 34.31206 * 1 2 3 32 32 H 1.09001 * 109.47020 * 154.31315 * 1 2 3 33 33 H 1.09005 * 109.47178 * 205.68636 * 3 2 1 34 34 H 1.09003 * 109.47325 * 325.68782 * 3 2 1 35 35 H 1.09000 * 109.47583 * 85.68791 * 3 2 1 36 36 H 1.09001 * 117.49602 * 145.01889 * 4 2 1 37 37 H 1.09000 * 117.51828 * 359.97438 * 4 2 1 38 38 H 0.97000 * 120.00497 * 359.97438 * 9 7 5 39 39 H 1.09000 * 109.47050 * 59.99851 * 10 9 7 40 40 H 1.08998 * 109.46883 * 300.00400 * 10 9 7 41 41 H 1.09002 * 109.50635 * 63.28401 * 13 11 10 42 42 H 1.09003 * 109.50698 * 303.20013 * 13 11 10 43 43 H 1.09000 * 109.47347 * 289.99759 * 15 14 13 44 44 H 1.09006 * 109.47458 * 49.99988 * 15 14 13 45 45 H 0.96997 * 119.99811 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99972 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.50528 * 61.32115 * 27 14 13 48 48 H 1.09005 * 109.50420 * 181.40891 * 27 14 13 49 49 H 1.08994 * 109.50954 * 176.78275 * 28 27 14 50 50 H 1.09004 * 109.51138 * 296.91641 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2366 -1.1210 -0.7650 5 6 2.2366 -1.1209 0.7650 6 1 1.6116 -1.8586 1.2683 7 6 3.5294 -0.7810 1.4609 8 8 3.9720 0.3466 1.4010 9 7 4.1937 -1.7301 2.1496 10 6 5.4508 -1.3997 2.8256 11 6 5.9944 -2.6452 3.5284 12 1 5.2335 -3.0483 4.1967 13 6 7.2400 -2.2731 4.3372 14 7 7.8033 -3.4863 4.9474 15 6 8.9699 -3.1639 5.7797 16 6 9.3690 -4.3785 6.5775 17 8 8.7428 -5.4111 6.4642 18 7 10.4211 -4.3172 7.4176 19 6 10.7844 -5.4223 8.1430 20 1 10.2273 -6.3419 8.0415 21 6 11.8694 -5.3593 9.0088 22 7 12.5470 -4.2401 9.1327 23 14 12.3640 -6.8649 9.9976 24 1 13.3459 -7.6653 9.2229 25 1 12.9774 -6.4353 11.2800 26 1 11.1618 -7.6909 10.2763 27 6 8.1488 -4.4756 3.9163 28 6 6.8941 -4.8265 3.1125 29 8 6.3428 -3.6314 2.5528 30 1 -0.3633 0.0772 1.0248 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1824 1.3085 -0.4455 34 1 1.5811 2.0743 -0.5793 35 1 2.2772 1.7415 1.0247 36 1 3.1716 -0.8751 -1.2683 37 1 1.6117 -1.8589 -1.2680 38 1 3.8395 -2.6318 2.1978 39 1 5.2723 -0.6162 3.5621 40 1 6.1769 -1.0500 2.0918 41 1 6.9676 -1.5649 5.1198 42 1 7.9802 -1.8199 3.6778 43 1 9.7993 -2.8602 5.1409 44 1 8.7177 -2.3497 6.4592 45 1 10.9216 -3.4913 7.5085 46 1 13.3041 -4.1960 9.7373 47 1 8.9034 -4.0581 3.2496 48 1 8.5406 -5.3749 4.3917 49 1 7.1567 -5.5164 2.3105 50 1 6.1598 -5.2932 3.7690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715281356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -87.828800 kcal Electronic energy + Delta-G solvation = -29237.968752 eV Core-core repulsion = 25073.083518 eV Total energy + Delta-G solvation = -4164.885234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.54454 -39.74764 -38.17623 -37.52339 -35.46356 -34.87635 -33.86099 -31.78602 -31.29545 -29.81861 -29.05650 -27.73979 -27.13278 -25.27983 -24.01934 -23.81166 -22.29500 -20.91877 -20.24677 -19.43270 -19.20031 -17.91044 -17.38190 -16.76006 -16.33826 -15.98365 -15.87821 -15.28245 -15.11180 -14.91319 -14.71292 -14.51726 -14.25246 -14.07411 -13.97146 -13.68382 -13.57276 -13.40034 -13.26739 -12.87251 -12.80468 -12.36410 -12.30085 -12.11994 -11.99944 -11.73556 -11.55945 -11.53178 -11.26614 -11.22692 -10.95652 -10.57129 -10.52365 -10.41897 -10.25690 -10.22024 -9.79451 -9.64183 -9.51138 -9.26948 -8.51284 -8.04534 -7.95476 -6.45443 -3.86522 2.28406 2.83453 3.14934 3.24133 3.29638 3.42372 3.58369 3.81604 3.86726 4.18614 4.27725 4.33155 4.44245 4.69052 4.74351 4.76939 4.87123 4.94366 5.01322 5.15907 5.20439 5.20923 5.31206 5.33707 5.34179 5.37238 5.50349 5.53510 5.57299 5.60394 5.61196 5.68699 5.74588 5.75615 5.81610 5.84066 5.88096 6.07842 6.14707 6.20949 6.25582 6.29873 7.04990 7.10240 7.24092 7.30013 7.51514 8.01905 8.03674 8.57081 9.13859 9.49795 10.01027 10.72136 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.001663 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.253218 B =16829.417183 C =17174.549656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.146 4.146 5 C -0.189 4.189 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.538 6.538 9 N -0.719 5.719 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.512 5.512 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.580 6.580 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C 0.014 3.986 28 C 0.069 3.931 29 O -0.385 6.385 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.404 0.596 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.033 0.967 48 H 0.114 0.886 49 H 0.097 0.903 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 7.951 -17.412 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.184 4.184 5 C -0.210 4.210 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.415 6.415 9 N -0.371 5.371 10 C 0.007 3.993 11 C 0.026 3.974 12 H 0.092 0.908 13 C -0.104 4.104 14 N -0.237 5.237 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.114 4.114 28 C -0.008 4.008 29 O -0.304 6.304 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.239 0.761 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.132 0.868 49 H 0.115 0.885 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.450 7.931 -17.273 27.195 hybrid contribution 1.338 -0.476 0.585 1.536 sum -18.112 7.455 -16.688 25.732 Atomic orbital electron populations 1.21405 0.91508 1.02246 1.02239 1.21596 0.94680 0.91883 1.01337 1.21354 0.99610 0.92393 1.02623 1.23218 1.03016 1.01372 0.90756 1.22354 0.97732 1.05073 0.95876 0.86018 1.19657 0.84604 0.84645 0.78217 1.90707 1.68694 1.20791 1.61306 1.45846 1.24239 1.13722 1.53270 1.21333 0.85462 0.95547 0.96999 1.22303 0.96237 0.88888 0.89949 0.90761 1.22675 0.96374 0.93261 0.98047 1.61775 1.30873 1.09728 1.21340 1.21871 0.91717 0.98355 0.96560 1.19683 0.83543 0.89478 0.84449 1.90474 1.55079 1.32003 1.68844 1.41864 1.26708 1.14116 1.37167 1.19698 1.12093 0.92320 1.18873 0.87876 1.25271 0.96311 0.98280 0.98028 1.69611 1.20444 1.25905 1.38216 0.85850 0.78859 0.80823 0.78708 1.20415 1.20904 1.19404 1.22965 0.96743 0.98869 0.92798 1.22679 0.94631 0.86145 0.97331 1.87944 1.82601 1.26902 1.32966 0.91950 0.91607 0.92272 0.91697 0.93307 0.91390 0.88242 0.87841 0.76102 0.89806 0.90624 0.89483 0.93863 0.93256 0.89147 0.77464 0.91826 0.94925 0.86758 0.88529 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.85 37.16 0.37 -0.29 16 2 C -0.09 -0.72 2.70 -154.50 -0.42 -1.14 16 3 C -0.10 -0.93 8.09 37.16 0.30 -0.63 16 4 C -0.15 -1.02 9.52 -26.73 -0.25 -1.28 16 5 C -0.19 -1.48 5.91 -91.77 -0.54 -2.03 16 6 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.54 5.71 7.59 -10.99 -0.08 5.63 16 8 O -0.54 -7.30 13.10 5.56 0.07 -7.22 16 9 N -0.72 -6.77 5.51 -60.29 -0.33 -7.10 16 10 C 0.13 1.34 5.35 -4.04 -0.02 1.32 16 11 C 0.08 0.95 2.84 -26.68 -0.08 0.88 16 12 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.03 0.32 4.93 -3.71 -0.02 0.30 16 14 N -0.51 -8.29 4.46 -235.75 -1.05 -9.34 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.19 7.49 -10.99 -0.08 10.10 16 17 O -0.58 -15.08 13.93 5.54 0.08 -15.00 16 18 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 23 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.01 0.22 5.29 -3.72 -0.02 0.20 16 28 C 0.07 0.89 7.01 37.21 0.26 1.15 16 29 O -0.38 -4.83 10.42 -35.23 -0.37 -5.19 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 32 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 33 H 0.06 0.68 7.01 -51.93 -0.36 0.32 16 34 H 0.05 0.36 7.92 -51.93 -0.41 -0.05 16 35 H 0.07 0.72 7.26 -51.93 -0.38 0.34 16 36 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.10 0.53 8.05 -51.93 -0.42 0.12 16 38 H 0.40 3.14 8.47 -40.82 -0.35 2.80 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 44 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 45 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.11 2.16 5.88 -51.93 -0.31 1.85 16 49 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -32.11 403.19 -9.10 -41.20 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.36 Total: 11.23 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.86 Total: 7.14 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.72 Total: -53.98 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.22 Total: -27.41 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.11 -9.10 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715281356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.626 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds