Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.55805 * 2 1 4 4 C 1.53002 * 117.50072 * 214.31009 * 2 1 3 5 5 C 1.52998 * 59.99922 * 252.50861 * 4 2 1 6 6 H 1.08998 * 117.49919 * 107.51115 * 5 4 2 7 7 C 1.50702 * 117.50060 * 252.50838 * 5 4 2 8 8 O 1.21281 * 119.99835 * 68.60785 * 7 5 4 9 9 N 1.34772 * 119.99906 * 248.61190 * 7 5 4 10 10 C 1.46506 * 119.99887 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.54474 * 305.11117 * 11 10 9 13 13 C 1.53103 * 109.50526 * 184.99862 * 11 10 9 14 14 N 1.47016 * 109.29298 * 183.24310 * 13 11 10 15 15 C 1.46894 * 110.99844 * 182.37346 * 14 13 11 16 16 C 1.50698 * 109.47251 * 169.99743 * 15 14 13 17 17 O 1.21298 * 120.00204 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00322 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00145 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99899 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99964 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99990 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99911 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47281 * 90.00598 * 23 21 19 25 25 H 1.48500 * 109.47292 * 210.00463 * 23 21 19 26 26 H 1.48503 * 109.47341 * 330.00261 * 23 21 19 27 27 C 1.47009 * 110.75376 * 58.59374 * 14 13 11 28 28 C 1.53093 * 109.26071 * 301.38357 * 27 14 13 29 29 O 1.43015 * 109.25965 * 56.84798 * 28 27 14 30 30 H 1.09001 * 109.46801 * 274.30882 * 1 2 3 31 31 H 1.08998 * 109.46885 * 34.31206 * 1 2 3 32 32 H 1.09001 * 109.47020 * 154.31315 * 1 2 3 33 33 H 1.09005 * 109.47178 * 205.68636 * 3 2 1 34 34 H 1.09003 * 109.47325 * 325.68782 * 3 2 1 35 35 H 1.09000 * 109.47583 * 85.68791 * 3 2 1 36 36 H 1.09001 * 117.49602 * 145.01889 * 4 2 1 37 37 H 1.09000 * 117.51828 * 359.97438 * 4 2 1 38 38 H 0.97000 * 120.00497 * 359.97438 * 9 7 5 39 39 H 1.09000 * 109.47050 * 59.99851 * 10 9 7 40 40 H 1.08998 * 109.46883 * 300.00400 * 10 9 7 41 41 H 1.09002 * 109.50635 * 63.28401 * 13 11 10 42 42 H 1.09003 * 109.50698 * 303.20013 * 13 11 10 43 43 H 1.09000 * 109.47347 * 289.99759 * 15 14 13 44 44 H 1.09006 * 109.47458 * 49.99988 * 15 14 13 45 45 H 0.96997 * 119.99811 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99972 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.50528 * 61.32115 * 27 14 13 48 48 H 1.09005 * 109.50420 * 181.40891 * 27 14 13 49 49 H 1.08994 * 109.50954 * 176.78275 * 28 27 14 50 50 H 1.09004 * 109.51138 * 296.91641 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2366 -1.1210 -0.7650 5 6 2.2366 -1.1209 0.7650 6 1 1.6116 -1.8586 1.2683 7 6 3.5294 -0.7810 1.4609 8 8 3.9720 0.3466 1.4010 9 7 4.1937 -1.7301 2.1496 10 6 5.4508 -1.3997 2.8256 11 6 5.9944 -2.6452 3.5284 12 1 5.2335 -3.0483 4.1967 13 6 7.2400 -2.2731 4.3372 14 7 7.8033 -3.4863 4.9474 15 6 8.9699 -3.1639 5.7797 16 6 9.3690 -4.3785 6.5775 17 8 8.7428 -5.4111 6.4642 18 7 10.4211 -4.3172 7.4176 19 6 10.7844 -5.4223 8.1430 20 1 10.2273 -6.3419 8.0415 21 6 11.8694 -5.3593 9.0088 22 7 12.5470 -4.2401 9.1327 23 14 12.3640 -6.8649 9.9976 24 1 13.3459 -7.6653 9.2229 25 1 12.9774 -6.4353 11.2800 26 1 11.1618 -7.6909 10.2763 27 6 8.1488 -4.4756 3.9163 28 6 6.8941 -4.8265 3.1125 29 8 6.3428 -3.6314 2.5528 30 1 -0.3633 0.0772 1.0248 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1824 1.3085 -0.4455 34 1 1.5811 2.0743 -0.5793 35 1 2.2772 1.7415 1.0247 36 1 3.1716 -0.8751 -1.2683 37 1 1.6117 -1.8589 -1.2680 38 1 3.8395 -2.6318 2.1978 39 1 5.2723 -0.6162 3.5621 40 1 6.1769 -1.0500 2.0918 41 1 6.9676 -1.5649 5.1198 42 1 7.9802 -1.8199 3.6778 43 1 9.7993 -2.8602 5.1409 44 1 8.7177 -2.3497 6.4592 45 1 10.9216 -3.4913 7.5085 46 1 13.3041 -4.1960 9.7373 47 1 8.9034 -4.0581 3.2496 48 1 8.5406 -5.3749 4.3917 49 1 7.1567 -5.5164 2.3105 50 1 6.1598 -5.2932 3.7690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715281356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -111.865389 kcal Electronic energy + Delta-G solvation = -29239.011057 eV Core-core repulsion = 25073.083518 eV Total energy + Delta-G solvation = -4165.927538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36346 -40.88684 -39.80237 -38.26068 -36.74968 -35.85443 -35.73463 -33.29341 -32.74360 -30.53712 -30.28506 -28.32257 -28.26013 -26.84009 -25.24732 -24.82945 -23.27968 -21.82558 -21.15854 -21.02623 -20.05209 -19.86468 -18.14847 -17.98662 -17.50355 -17.14609 -17.00036 -16.58585 -16.42058 -16.07644 -15.89714 -15.69023 -15.41010 -15.23594 -15.12046 -14.78023 -14.65379 -14.45818 -14.13177 -13.92670 -13.67208 -13.50125 -13.44589 -13.24211 -13.02198 -12.88315 -12.85146 -12.67855 -12.43070 -12.36750 -12.25538 -12.12222 -12.10504 -11.62445 -11.44113 -11.14830 -10.90084 -10.81848 -10.45413 -10.22706 -10.09158 -10.00849 -9.34643 -8.47106 -5.95813 1.37545 1.41742 1.51901 1.54227 2.03377 2.05074 2.28171 2.60475 2.67722 2.82526 3.19558 3.32938 3.65678 3.72176 3.77861 3.87394 3.89699 3.98004 4.06996 4.15670 4.18834 4.22000 4.31161 4.40713 4.46009 4.48810 4.56402 4.60681 4.62480 4.70775 4.84285 4.85956 4.87506 4.93797 5.00627 5.01602 5.09435 5.11292 5.13282 5.31185 5.40389 5.41549 5.56328 5.76465 5.94587 6.04356 6.13523 6.55430 6.59350 7.12105 7.26257 7.55272 8.10420 8.70200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037362 B = 0.001663 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.253218 B =16829.417183 C =17174.549656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.099 4.099 4 C -0.137 4.137 5 C -0.193 4.193 6 H 0.146 0.854 7 C 0.536 3.464 8 O -0.574 6.574 9 N -0.713 5.713 10 C 0.138 3.862 11 C 0.092 3.908 12 H 0.079 0.921 13 C 0.025 3.975 14 N -0.528 5.528 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.613 6.613 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.015 3.985 28 C 0.077 3.923 29 O -0.386 6.386 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.414 0.586 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.035 0.965 48 H 0.078 0.922 49 H 0.117 0.883 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.538 7.924 -18.110 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.156 4.156 4 C -0.174 4.174 5 C -0.214 4.214 6 H 0.163 0.837 7 C 0.324 3.676 8 O -0.454 6.454 9 N -0.364 5.364 10 C 0.014 3.986 11 C 0.033 3.967 12 H 0.097 0.903 13 C -0.103 4.103 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.113 4.113 28 C 0.001 3.999 29 O -0.305 6.305 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.250 0.750 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.131 0.869 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.097 0.903 49 H 0.135 0.865 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.837 7.907 -17.983 28.637 hybrid contribution 1.748 -0.426 0.755 1.951 sum -19.090 7.481 -17.228 26.780 Atomic orbital electron populations 1.21404 0.89669 1.03333 1.02578 1.21695 0.95955 0.90956 1.01681 1.21259 0.98999 0.94034 1.01293 1.23283 1.02692 1.01393 0.90076 1.22429 0.96653 1.05888 0.96399 0.83662 1.20180 0.85329 0.84161 0.77927 1.90698 1.69792 1.22302 1.62625 1.45804 1.23764 1.14116 1.52739 1.21194 0.85594 0.95050 0.96770 1.22291 0.95731 0.88914 0.89731 0.90308 1.22783 0.96739 0.92035 0.98729 1.61744 1.30218 1.11438 1.21957 1.21749 0.93021 0.95829 0.96785 1.20667 0.82150 0.90702 0.83548 1.90454 1.55848 1.33962 1.69614 1.41932 1.27615 1.13697 1.37832 1.19667 1.13138 0.92637 1.20761 0.90153 1.26035 0.95739 1.01073 0.98411 1.69673 1.20660 1.27229 1.38591 0.84924 0.78322 0.77474 0.77596 1.19680 1.19666 1.19728 1.22879 0.98252 0.97460 0.92720 1.22619 0.93160 0.86579 0.97567 1.87953 1.82380 1.26895 1.33284 0.91893 0.91120 0.90709 0.93774 0.91915 0.93423 0.89576 0.85347 0.74967 0.89221 0.91793 0.87751 0.93368 0.91659 0.86865 0.77078 0.91338 0.94664 0.90324 0.86534 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.85 71.98 0.71 -0.29 16 2 C -0.10 -1.41 2.70 -52.18 -0.14 -1.55 16 3 C -0.10 -1.78 8.09 71.98 0.58 -1.20 16 4 C -0.14 -1.65 9.52 30.59 0.29 -1.36 16 5 C -0.19 -2.67 5.91 -11.54 -0.07 -2.74 16 6 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 7 C 0.54 10.83 7.59 87.66 0.67 11.49 16 8 O -0.57 -15.69 13.10 -3.03 -0.04 -15.73 16 9 N -0.71 -12.37 5.51 -463.06 -2.55 -14.92 16 10 C 0.14 2.64 5.35 86.38 0.46 3.10 16 11 C 0.09 1.89 2.84 30.63 0.09 1.98 16 12 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 13 C 0.03 0.59 4.93 86.32 0.43 1.02 16 14 N -0.53 -16.54 4.46 -899.78 -4.01 -20.56 16 15 C 0.06 1.95 5.45 85.56 0.47 2.41 16 16 C 0.44 20.60 7.49 87.66 0.66 21.26 16 17 O -0.61 -32.75 13.93 -3.08 -0.04 -32.79 16 18 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 19 C -0.33 -18.66 9.68 84.04 0.81 -17.84 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 23 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 C 0.01 0.47 5.29 86.31 0.46 0.92 16 28 C 0.08 1.91 7.01 72.01 0.50 2.42 16 29 O -0.39 -8.97 10.42 -148.98 -1.55 -10.52 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.56 7.92 -2.39 -0.02 0.54 16 32 H 0.07 0.44 7.90 -2.39 -0.02 0.42 16 33 H 0.04 0.96 7.01 -2.38 -0.02 0.94 16 34 H 0.06 0.90 7.92 -2.39 -0.02 0.88 16 35 H 0.05 1.04 7.26 -2.39 -0.02 1.02 16 36 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 37 H 0.13 0.91 8.05 -2.39 -0.02 0.89 16 38 H 0.41 5.58 8.47 -92.71 -0.79 4.80 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 44 H 0.11 3.35 8.04 -2.38 -0.02 3.33 16 45 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 46 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 3.05 5.88 -2.38 -0.01 3.04 16 49 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -70.69 403.19 -1.70 -72.39 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.56 Total: 37.92 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.38 Total: 19.42 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -7.90 Total: -115.25 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -1.64 Total: -59.05 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.69 -1.70 -72.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715281356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.480 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds