Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48506 * 109.47195 * 270.00061 * 3 2 1 5 5 H 1.48498 * 109.47259 * 29.99836 * 3 2 1 6 6 H 1.48497 * 109.47259 * 149.99941 * 3 2 1 7 7 C 1.38948 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99832 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00506 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00253 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99709 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99896 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46663 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99740 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47070 * 180.02562 * 14 13 12 16 16 C 1.30999 * 120.00557 * 125.00172 * 15 14 13 17 17 C 1.50697 * 120.00557 * 180.02562 * 16 15 14 18 18 N 1.46495 * 109.47449 * 124.99465 * 17 16 15 19 19 C 1.34780 * 120.00312 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99716 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.00178 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47019 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.48461 * 304.97998 * 22 21 19 24 24 C 1.53092 * 109.48150 * 184.94016 * 22 21 19 25 25 C 1.53175 * 109.16179 * 182.41023 * 24 22 21 26 26 C 1.53176 * 109.03666 * 56.98460 * 25 24 22 27 27 C 1.53090 * 109.16134 * 303.01424 * 26 25 24 28 28 O 1.42900 * 109.41229 * 57.61417 * 27 26 25 29 29 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99775 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46726 * 60.00829 * 12 10 9 32 32 H 1.08996 * 109.47218 * 300.00579 * 12 10 9 33 33 H 1.00899 * 111.00104 * 56.04996 * 13 12 10 34 34 H 1.09002 * 109.47312 * 59.99738 * 14 13 12 35 35 H 1.09003 * 109.46912 * 299.99585 * 14 13 12 36 36 H 1.08000 * 120.00074 * 304.99252 * 15 14 13 37 37 H 1.08000 * 119.99368 * 359.97438 * 16 15 14 38 38 H 1.09000 * 109.46899 * 4.99310 * 17 16 15 39 39 H 1.09004 * 109.47044 * 244.99591 * 17 16 15 40 40 H 0.97003 * 119.99915 * 359.97438 * 18 17 16 41 41 H 1.09000 * 109.46583 * 59.99704 * 21 19 18 42 42 H 1.08997 * 109.46811 * 299.99875 * 21 19 18 43 43 H 1.09006 * 109.51892 * 62.50257 * 24 22 21 44 44 H 1.08998 * 109.52361 * 302.31939 * 24 22 21 45 45 H 1.08997 * 109.54332 * 297.10912 * 25 24 22 46 46 H 1.09004 * 109.53853 * 176.85141 * 25 24 22 47 47 H 1.09001 * 109.52023 * 62.92336 * 26 25 24 48 48 H 1.09000 * 109.51703 * 183.11177 * 26 25 24 49 49 H 1.09003 * 109.47673 * 177.59165 * 27 26 25 50 50 H 1.08995 * 109.48193 * 297.61744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 -0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0505 -3.7554 -0.0006 14 6 7.5189 -3.7946 0.0000 15 6 7.9832 -5.2282 -0.0013 16 6 8.8045 -5.6500 -0.9307 17 6 9.2683 -7.0839 -0.9323 18 7 8.9698 -7.6923 -2.2311 19 6 9.2971 -8.9788 -2.4638 20 8 9.8392 -9.6327 -1.5981 21 6 8.9906 -9.6045 -3.8002 22 6 9.4614 -11.0602 -3.8017 23 1 10.5175 -11.1011 -3.5351 24 6 9.2630 -11.6595 -5.1964 25 6 9.6801 -13.1332 -5.1744 26 6 8.8650 -13.8672 -4.1051 27 6 9.0788 -13.1827 -2.7525 28 8 8.7006 -11.8081 -2.8508 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3632 0.0004 31 1 5.9241 -1.8567 0.8900 32 1 5.9241 -1.8565 -0.8899 33 1 5.6750 -4.2713 -0.7822 34 1 7.8955 -3.2911 0.8904 35 1 7.8962 -3.2901 -0.8896 36 1 7.6389 -5.9080 0.7640 37 1 9.1485 -4.9703 -1.6962 38 1 8.7512 -7.6339 -0.1460 39 1 10.3430 -7.1183 -0.7533 40 1 8.5359 -7.1693 -2.9233 41 1 9.5084 -9.0546 -4.5860 42 1 7.9161 -9.5695 -3.9797 43 1 9.8768 -11.1179 -5.9162 44 1 8.2135 -11.5821 -5.4802 45 1 10.7417 -13.2082 -4.9392 46 1 9.4889 -13.5808 -6.1497 47 1 7.8075 -13.8344 -4.3669 48 1 9.1943 -14.9045 -4.0445 49 1 8.4678 -13.6745 -1.9957 50 1 10.1299 -13.2516 -2.4723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716280058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -139.132058 kcal Electronic energy + Delta-G solvation = -27707.971660 eV Core-core repulsion = 23540.861750 eV Total energy + Delta-G solvation = -4167.109910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.03786 -40.30354 -39.83494 -37.79636 -36.32825 -35.83677 -34.51708 -34.07056 -33.76186 -33.51278 -30.18523 -29.06658 -27.45224 -25.77513 -25.16645 -23.91542 -23.19967 -21.55946 -21.31593 -21.16483 -20.59233 -20.13387 -18.10949 -17.82321 -17.52029 -17.34916 -17.05651 -16.63209 -16.57706 -16.25922 -15.76320 -15.61291 -15.37859 -15.32595 -15.03816 -15.00171 -14.83222 -14.49938 -14.16957 -14.02743 -13.89370 -13.57631 -13.51424 -13.23064 -13.13343 -12.96492 -12.78155 -12.66545 -12.40635 -12.17378 -12.06342 -11.96652 -11.95764 -11.65483 -11.50674 -11.27490 -10.96186 -10.47271 -10.37262 -10.25844 -10.24599 -9.94341 -9.32445 -8.40719 -6.02076 1.03258 1.31595 1.36727 1.46166 1.70186 1.96337 2.24143 2.39915 2.79207 2.86612 3.15894 3.46597 3.74099 3.75226 3.80283 3.94536 3.98685 4.10625 4.13600 4.16810 4.23763 4.33145 4.40519 4.43955 4.48370 4.51419 4.57794 4.62126 4.66896 4.73288 4.78341 4.81878 4.87645 4.89461 4.97950 5.08328 5.13920 5.19010 5.39201 5.41539 5.52651 5.64708 5.73581 5.91167 6.06102 6.35750 6.40631 6.59700 6.60402 6.88575 7.30751 7.40240 7.97227 8.76983 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.001387 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.118386 B =20178.787152 C =21006.271129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.063 3.937 13 N -0.690 5.690 14 C 0.089 3.911 15 C -0.129 4.129 16 C -0.162 4.162 17 C 0.152 3.848 18 N -0.720 5.720 19 C 0.507 3.493 20 O -0.580 6.580 21 C -0.131 4.131 22 C 0.100 3.900 23 H 0.049 0.951 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.153 4.153 27 C 0.056 3.944 28 O -0.398 6.398 29 H 0.279 0.721 30 H 0.391 0.609 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.345 0.655 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.416 0.584 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.441 -16.411 -13.020 35.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.069 4.069 13 N -0.322 5.322 14 C -0.038 4.038 15 C -0.149 4.149 16 C -0.181 4.181 17 C 0.029 3.971 18 N -0.373 5.373 19 C 0.295 3.705 20 O -0.459 6.459 21 C -0.170 4.170 22 C 0.042 3.958 23 H 0.067 0.933 24 C -0.184 4.184 25 C -0.161 4.161 26 C -0.191 4.191 27 C -0.020 4.020 28 O -0.318 6.318 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.164 0.836 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.253 0.747 41 H 0.161 0.839 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 28.034 -17.448 -11.600 34.999 hybrid contribution -0.293 1.056 -0.784 1.348 sum 27.742 -16.392 -12.385 34.521 Atomic orbital electron populations 1.69813 1.08222 1.29274 1.50239 1.26138 0.96464 1.02782 0.95954 0.85343 0.79500 0.76534 0.79993 1.17984 1.20142 1.15335 1.19017 0.81613 0.94920 1.50515 0.92846 1.42023 1.05755 1.07643 1.67755 1.21056 0.91149 0.83266 0.81090 1.90549 1.71480 1.32907 1.55169 1.21640 0.89313 0.91730 1.04260 1.59994 1.08206 1.12225 1.51800 1.21098 0.86049 0.94254 1.02423 1.22854 0.96143 0.97042 0.98821 1.22836 0.99583 0.95525 1.00138 1.20207 1.00466 0.90922 0.85520 1.45965 1.62357 1.12184 1.16787 1.21184 0.77370 0.81445 0.90522 1.90700 1.44219 1.62669 1.48306 1.21848 1.05787 0.94577 0.94813 1.21906 0.94719 0.90129 0.89064 0.93264 1.22213 1.03351 0.96779 0.96035 1.21615 0.99807 0.95041 0.99676 1.22183 1.01328 1.00404 0.95198 1.22627 0.99847 0.81618 0.97917 1.87945 1.60562 1.21934 1.61369 0.91142 0.77364 0.86745 0.90000 0.83619 0.89118 0.92502 0.87875 0.84367 0.93165 0.90971 0.74721 0.83851 0.86846 0.88659 0.90697 0.91729 0.89976 0.91384 0.89634 0.89115 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.96 21.66 0.30 -56.02 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.97 38.18 27.74 68.60 1.90 40.08 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 7 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -27.51 5.09 -306.98 -1.56 -29.07 16 10 C 0.45 19.94 7.82 87.66 0.69 20.63 16 11 O -0.62 -34.35 15.78 -3.05 -0.05 -34.40 16 12 C 0.06 1.82 6.17 85.56 0.53 2.35 16 13 N -0.69 -19.43 6.11 -522.00 -3.19 -22.63 16 14 C 0.09 1.67 6.13 85.56 0.52 2.19 16 15 C -0.13 -2.34 9.38 25.65 0.24 -2.10 16 16 C -0.16 -2.29 9.24 25.65 0.24 -2.05 16 17 C 0.15 2.65 6.11 85.63 0.52 3.17 16 18 N -0.72 -11.02 5.55 -466.79 -2.59 -13.61 16 19 C 0.51 10.05 7.71 87.66 0.68 10.72 16 20 O -0.58 -17.13 15.42 10.72 0.17 -16.96 16 21 C -0.13 -1.59 5.41 29.85 0.16 -1.43 16 22 C 0.10 1.56 2.19 30.62 0.07 1.63 16 23 H 0.05 0.90 7.96 -2.39 -0.02 0.88 16 24 C -0.15 -1.41 5.42 30.68 0.17 -1.24 16 25 C -0.12 -1.17 6.03 30.71 0.19 -0.98 16 26 C -0.15 -1.76 6.14 30.68 0.19 -1.57 16 27 C 0.06 0.95 6.84 72.01 0.49 1.44 16 28 O -0.40 -8.78 9.64 -135.22 -1.30 -10.08 16 29 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 30 H 0.39 14.85 5.76 -92.70 -0.53 14.31 16 31 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.35 10.48 8.42 -89.70 -0.76 9.72 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 0.82 7.79 -2.39 -0.02 0.80 16 36 H 0.10 2.22 7.84 -2.91 -0.02 2.19 16 37 H 0.14 1.35 7.84 -2.91 -0.02 1.33 16 38 H 0.05 1.10 7.79 -2.39 -0.02 1.09 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.42 3.86 8.46 -92.71 -0.78 3.08 16 41 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -86.40 411.81 -1.51 -87.90 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -1.18 Total: 40.95 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.00 Total: 13.83 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -7.04 Total: -121.33 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -1.19 Total: -61.44 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -86.40 -1.51 -87.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716280058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.230 kcal (2) G-P(sol) polarization free energy of solvation -86.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds