Wall clock time and date at job start Sat Apr 11 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86806 * 119.99578 * 2 1 4 4 H 1.48502 * 109.47036 * 269.99461 * 3 2 1 5 5 H 1.48495 * 109.47440 * 29.99755 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99967 * 3 2 1 7 7 C 1.38950 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99486 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99570 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47195 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00057 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46905 * 179.97438 * 14 13 12 16 16 C 1.31000 * 119.99592 * 124.99886 * 15 14 13 17 17 C 1.50703 * 120.00062 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.46917 * 125.00086 * 17 16 15 19 19 C 1.34777 * 119.99720 * 180.02562 * 18 17 16 20 20 O 1.21284 * 120.00276 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00044 * 180.02562 * 19 18 17 22 22 C 1.52999 * 109.47405 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.48249 * 54.99639 * 22 21 19 24 24 C 1.53098 * 109.48010 * 175.02117 * 22 21 19 25 25 C 1.53178 * 109.15976 * 177.60079 * 24 22 21 26 26 C 1.53179 * 109.03547 * 303.01729 * 25 24 22 27 27 C 1.53088 * 109.16372 * 56.98571 * 26 25 24 28 28 O 1.42903 * 109.48512 * 294.96799 * 22 21 19 29 29 H 0.96996 * 120.00645 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00348 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47167 * 59.99559 * 12 10 9 32 32 H 1.09004 * 109.47130 * 299.99701 * 12 10 9 33 33 H 1.00900 * 110.99611 * 56.04029 * 13 12 10 34 34 H 1.09001 * 109.47171 * 59.99891 * 14 13 12 35 35 H 1.09001 * 109.46869 * 299.99951 * 14 13 12 36 36 H 1.08001 * 120.00641 * 304.99978 * 15 14 13 37 37 H 1.07999 * 120.00217 * 0.02562 * 16 15 14 38 38 H 1.09000 * 109.46633 * 5.00374 * 17 16 15 39 39 H 1.08995 * 109.47321 * 245.00382 * 17 16 15 40 40 H 0.97000 * 120.00153 * 0.02562 * 18 17 16 41 41 H 1.09000 * 109.47332 * 59.99388 * 21 19 18 42 42 H 1.09008 * 109.47175 * 299.99821 * 21 19 18 43 43 H 1.08990 * 109.52021 * 297.50286 * 24 22 21 44 44 H 1.08999 * 109.52366 * 57.63214 * 24 22 21 45 45 H 1.09000 * 109.54595 * 62.88180 * 25 24 22 46 46 H 1.08996 * 109.54603 * 183.06170 * 25 24 22 47 47 H 1.09004 * 109.52091 * 176.88375 * 26 25 24 48 48 H 1.08992 * 109.52309 * 297.01273 * 26 25 24 49 49 H 1.08998 * 109.48639 * 62.37353 * 27 26 25 50 50 H 1.09000 * 109.48485 * 182.39627 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1987 -5.9795 0.0004 14 6 1.4985 -7.2708 0.0015 15 6 2.5080 -8.3896 0.0001 16 6 2.4651 -9.3117 0.9296 17 6 3.4743 -10.4309 0.9279 18 7 4.1544 -10.4770 2.2246 19 6 5.1051 -11.4044 2.4543 20 8 5.3972 -12.2010 1.5876 21 6 5.8044 -11.4522 3.7884 22 6 6.8300 -12.5876 3.7862 23 1 7.5098 -12.4618 2.9435 24 6 7.6263 -12.5587 5.0935 25 6 8.6090 -13.7336 5.1096 26 6 7.8288 -15.0399 4.9329 27 6 7.0247 -14.9730 3.6320 28 8 6.1534 -13.8409 3.6698 29 1 -0.4851 0.8400 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6169 -4.9208 -0.8886 32 1 0.6177 -4.9205 0.8914 33 1 2.8342 -5.9123 0.7812 34 1 0.8725 -7.3455 -0.8877 35 1 0.8746 -7.3450 0.8923 36 1 3.2670 -8.4313 -0.7672 37 1 1.7059 -9.2703 1.6967 38 1 4.2068 -10.2584 0.1394 39 1 2.9657 -11.3785 0.7505 40 1 3.9205 -9.8402 2.9179 41 1 5.0717 -11.6253 4.5767 42 1 6.3126 -10.5045 3.9665 43 1 8.1781 -11.6214 5.1631 44 1 6.9428 -12.6427 5.9383 45 1 9.3236 -13.6226 4.2940 46 1 9.1411 -13.7509 6.0607 47 1 8.5256 -15.8770 4.8877 48 1 7.1504 -15.1757 5.7751 49 1 7.7070 -14.8785 2.7872 50 1 6.4343 -15.8827 3.5223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716280061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:27 Heat of formation + Delta-G solvation = -118.005179 kcal Electronic energy + Delta-G solvation = -27606.312431 eV Core-core repulsion = 23440.118651 eV Total energy + Delta-G solvation = -4166.193780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32536 -39.15421 -38.34306 -36.75692 -35.19789 -33.98224 -33.91239 -33.32650 -32.69565 -31.22543 -29.32391 -28.03352 -26.05549 -24.80934 -24.18397 -23.08707 -22.40278 -20.77775 -20.65618 -19.80833 -19.17686 -17.90546 -17.30816 -16.89338 -16.71010 -16.25940 -15.88808 -15.55919 -15.41088 -14.97344 -14.91311 -14.62611 -14.43674 -14.30411 -13.98336 -13.84402 -13.58162 -13.34228 -13.13545 -13.04091 -12.89714 -12.65287 -12.33590 -12.09790 -11.88455 -11.66118 -11.59883 -11.49829 -11.48110 -11.21969 -11.15867 -11.04135 -10.71244 -10.40429 -10.23152 -10.13671 -9.72826 -9.53669 -9.52005 -9.14143 -8.49661 -8.10120 -7.97448 -6.42984 -3.83883 1.81708 2.48214 3.09920 3.17133 3.25844 3.31590 3.42609 3.89279 4.10396 4.25232 4.30996 4.32825 4.40548 4.48584 4.65062 4.68577 4.78351 4.84428 4.87828 5.00279 5.06907 5.08017 5.21245 5.23401 5.25604 5.27929 5.36361 5.41059 5.45485 5.46430 5.50989 5.59089 5.62133 5.66482 5.69080 5.78818 5.85202 5.95096 6.15210 6.23857 6.43598 6.53293 6.94224 7.16101 7.28475 7.54032 7.62258 8.04395 8.04955 8.59899 9.16586 9.52824 10.04244 10.74738 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.001326 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.927309 B =21112.127445 C =22185.678562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.082 3.918 15 C -0.110 4.110 16 C -0.191 4.191 17 C 0.154 3.846 18 N -0.730 5.730 19 C 0.514 3.486 20 O -0.530 6.530 21 C -0.136 4.136 22 C 0.106 3.894 23 H 0.066 0.934 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.158 4.158 27 C 0.064 3.936 28 O -0.368 6.368 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.350 0.650 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -27.860 10.924 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.298 5.298 14 C -0.047 4.047 15 C -0.129 4.129 16 C -0.210 4.210 17 C 0.031 3.969 18 N -0.383 5.383 19 C 0.300 3.700 20 O -0.406 6.406 21 C -0.176 4.176 22 C 0.048 3.952 23 H 0.084 0.916 24 C -0.190 4.190 25 C -0.160 4.160 26 C -0.195 4.195 27 C -0.013 4.013 28 O -0.287 6.287 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.170 0.830 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.223 -28.270 9.589 31.244 hybrid contribution -0.529 1.197 1.264 1.820 sum 8.695 -27.073 10.853 30.436 Atomic orbital electron populations 1.69606 1.05948 1.28180 1.50577 1.25258 0.95624 0.99715 0.97277 0.85856 0.79212 0.80780 0.78432 1.20366 1.20933 1.19429 1.19713 0.93396 0.82241 1.47635 0.87906 1.41859 1.09199 1.04588 1.64335 1.19799 0.88389 0.84717 0.84547 1.90524 1.13758 1.87056 1.55399 1.21690 0.94333 0.90925 1.01282 1.60043 1.18787 0.99510 1.51471 1.21077 0.94430 0.88193 1.00951 1.22996 0.98409 0.93491 0.98016 1.22828 1.00328 0.97058 1.00782 1.20275 0.93549 0.97608 0.85486 1.46037 1.40071 1.35247 1.16920 1.20523 0.79638 0.80244 0.89612 1.90721 1.64062 1.39338 1.46476 1.21752 0.99702 0.99809 0.96348 1.21749 0.92914 0.83975 0.96552 0.91606 1.22240 0.98848 0.99318 0.98583 1.21571 0.97724 0.94359 1.02340 1.22218 0.99764 0.98112 0.99446 1.22509 0.93552 0.89329 0.95950 1.87968 1.32986 1.13443 1.94272 0.91860 0.77448 0.89494 0.93822 0.83027 0.89958 0.94961 0.86262 0.86804 0.91066 0.90929 0.76436 0.87992 0.87351 0.90649 0.90876 0.91730 0.91391 0.90986 0.91115 0.93197 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 11 O -0.58 -15.82 15.78 5.55 0.09 -15.74 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.67 -10.52 6.12 -116.33 -0.71 -11.24 16 14 C 0.08 0.96 6.12 -4.98 -0.03 0.93 16 15 C -0.11 -1.13 9.38 -36.03 -0.34 -1.47 16 16 C -0.19 -1.66 9.24 -36.02 -0.33 -2.00 16 17 C 0.15 1.44 6.11 -5.19 -0.03 1.41 16 18 N -0.73 -6.23 5.55 -61.47 -0.34 -6.57 16 19 C 0.51 5.28 7.71 -10.98 -0.08 5.20 16 20 O -0.53 -7.64 15.42 -8.85 -0.14 -7.78 16 21 C -0.14 -0.94 5.41 -27.88 -0.15 -1.10 16 22 C 0.11 0.87 2.19 -26.68 -0.06 0.81 16 23 H 0.07 0.62 7.96 -51.93 -0.41 0.20 16 24 C -0.15 -0.88 5.42 -26.59 -0.14 -1.02 16 25 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 26 C -0.16 -0.90 6.14 -26.59 -0.16 -1.06 16 27 C 0.06 0.49 6.84 37.20 0.25 0.74 16 28 O -0.37 -3.76 9.64 -49.64 -0.48 -4.24 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.35 5.72 8.42 -39.29 -0.33 5.39 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.34 7.79 -51.93 -0.40 -0.06 16 36 H 0.12 1.30 7.84 -52.49 -0.41 0.89 16 37 H 0.11 0.88 7.84 -52.49 -0.41 0.47 16 38 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.40 2.45 8.46 -40.82 -0.35 2.11 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 414.93 15.07 6.25 6.25 Total: -1.00 -34.47 414.93 -9.76 -44.23 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.47 Total: 12.37 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.60 Total: 4.71 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.39 Total: -55.72 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.53 Total: -27.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.47 -9.76 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716280061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.776 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds