Wall clock time and date at job start Sat Apr 11 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86806 * 119.99578 * 2 1 4 4 H 1.48502 * 109.47036 * 269.99461 * 3 2 1 5 5 H 1.48495 * 109.47440 * 29.99755 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99967 * 3 2 1 7 7 C 1.38950 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99486 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99570 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47195 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00057 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46905 * 179.97438 * 14 13 12 16 16 C 1.31000 * 119.99592 * 124.99886 * 15 14 13 17 17 C 1.50703 * 120.00062 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.46917 * 125.00086 * 17 16 15 19 19 C 1.34777 * 119.99720 * 180.02562 * 18 17 16 20 20 O 1.21284 * 120.00276 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00044 * 180.02562 * 19 18 17 22 22 C 1.52999 * 109.47405 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.48249 * 54.99639 * 22 21 19 24 24 C 1.53098 * 109.48010 * 175.02117 * 22 21 19 25 25 C 1.53178 * 109.15976 * 177.60079 * 24 22 21 26 26 C 1.53179 * 109.03547 * 303.01729 * 25 24 22 27 27 C 1.53088 * 109.16372 * 56.98571 * 26 25 24 28 28 O 1.42903 * 109.48512 * 294.96799 * 22 21 19 29 29 H 0.96996 * 120.00645 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00348 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47167 * 59.99559 * 12 10 9 32 32 H 1.09004 * 109.47130 * 299.99701 * 12 10 9 33 33 H 1.00900 * 110.99611 * 56.04029 * 13 12 10 34 34 H 1.09001 * 109.47171 * 59.99891 * 14 13 12 35 35 H 1.09001 * 109.46869 * 299.99951 * 14 13 12 36 36 H 1.08001 * 120.00641 * 304.99978 * 15 14 13 37 37 H 1.07999 * 120.00217 * 0.02562 * 16 15 14 38 38 H 1.09000 * 109.46633 * 5.00374 * 17 16 15 39 39 H 1.08995 * 109.47321 * 245.00382 * 17 16 15 40 40 H 0.97000 * 120.00153 * 0.02562 * 18 17 16 41 41 H 1.09000 * 109.47332 * 59.99388 * 21 19 18 42 42 H 1.09008 * 109.47175 * 299.99821 * 21 19 18 43 43 H 1.08990 * 109.52021 * 297.50286 * 24 22 21 44 44 H 1.08999 * 109.52366 * 57.63214 * 24 22 21 45 45 H 1.09000 * 109.54595 * 62.88180 * 25 24 22 46 46 H 1.08996 * 109.54603 * 183.06170 * 25 24 22 47 47 H 1.09004 * 109.52091 * 176.88375 * 26 25 24 48 48 H 1.08992 * 109.52309 * 297.01273 * 26 25 24 49 49 H 1.08998 * 109.48639 * 62.37353 * 27 26 25 50 50 H 1.09000 * 109.48485 * 182.39627 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1987 -5.9795 0.0004 14 6 1.4985 -7.2708 0.0015 15 6 2.5080 -8.3896 0.0001 16 6 2.4651 -9.3117 0.9296 17 6 3.4743 -10.4309 0.9279 18 7 4.1544 -10.4770 2.2246 19 6 5.1051 -11.4044 2.4543 20 8 5.3972 -12.2010 1.5876 21 6 5.8044 -11.4522 3.7884 22 6 6.8300 -12.5876 3.7862 23 1 7.5098 -12.4618 2.9435 24 6 7.6263 -12.5587 5.0935 25 6 8.6090 -13.7336 5.1096 26 6 7.8288 -15.0399 4.9329 27 6 7.0247 -14.9730 3.6320 28 8 6.1534 -13.8409 3.6698 29 1 -0.4851 0.8400 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6169 -4.9208 -0.8886 32 1 0.6177 -4.9205 0.8914 33 1 2.8342 -5.9123 0.7812 34 1 0.8725 -7.3455 -0.8877 35 1 0.8746 -7.3450 0.8923 36 1 3.2670 -8.4313 -0.7672 37 1 1.7059 -9.2703 1.6967 38 1 4.2068 -10.2584 0.1394 39 1 2.9657 -11.3785 0.7505 40 1 3.9205 -9.8402 2.9179 41 1 5.0717 -11.6253 4.5767 42 1 6.3126 -10.5045 3.9665 43 1 8.1781 -11.6214 5.1631 44 1 6.9428 -12.6427 5.9383 45 1 9.3236 -13.6226 4.2940 46 1 9.1411 -13.7509 6.0607 47 1 8.5256 -15.8770 4.8877 48 1 7.1504 -15.1757 5.7751 49 1 7.7070 -14.8785 2.7872 50 1 6.4343 -15.8827 3.5223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716280061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:26 Heat of formation + Delta-G solvation = -143.756190 kcal Electronic energy + Delta-G solvation = -27607.429078 eV Core-core repulsion = 23440.118651 eV Total energy + Delta-G solvation = -4167.310427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.03701 -40.15603 -39.83024 -37.78546 -36.31266 -35.79518 -34.51176 -34.05909 -33.57403 -33.21254 -30.14490 -29.00165 -27.41101 -25.89591 -25.19898 -23.94962 -23.20783 -21.55842 -21.16851 -21.16478 -20.42645 -19.88189 -18.12136 -17.84334 -17.52167 -17.32735 -16.97454 -16.58910 -16.46023 -16.19775 -15.96184 -15.66325 -15.38621 -15.34425 -15.13202 -14.97452 -14.82732 -14.33415 -14.07013 -13.88631 -13.63501 -13.53315 -13.43722 -13.21383 -13.08410 -12.90582 -12.82333 -12.67375 -12.41373 -12.17152 -12.12088 -12.04887 -11.96105 -11.65456 -11.50458 -11.27207 -10.96894 -10.40280 -10.32900 -10.28321 -10.01114 -9.94076 -9.33137 -8.46258 -5.95050 1.02947 1.38715 1.42782 1.55277 1.70278 2.05749 2.30125 2.39802 2.85760 3.00572 3.21257 3.55198 3.74006 3.75324 3.80472 3.94595 3.99073 4.09724 4.13915 4.23435 4.32209 4.32622 4.40436 4.46906 4.49000 4.53909 4.59327 4.62377 4.67336 4.73489 4.78752 4.80866 4.86907 4.90054 4.98059 5.08423 5.14192 5.18840 5.38951 5.41072 5.41528 5.64510 5.71935 5.89785 6.10825 6.34584 6.42314 6.59700 6.60755 7.13142 7.30684 7.56778 8.12179 8.71064 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.001326 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.927309 B =21112.127445 C =22185.678562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.684 5.684 14 C 0.088 3.912 15 C -0.126 4.126 16 C -0.163 4.163 17 C 0.153 3.847 18 N -0.720 5.720 19 C 0.507 3.493 20 O -0.580 6.580 21 C -0.131 4.131 22 C 0.101 3.899 23 H 0.044 0.956 24 C -0.146 4.146 25 C -0.125 4.125 26 C -0.152 4.152 27 C 0.056 3.944 28 O -0.394 6.394 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.345 0.655 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.416 0.584 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.041 0.959 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 -27.829 12.607 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.067 4.067 13 N -0.316 5.316 14 C -0.040 4.040 15 C -0.145 4.145 16 C -0.182 4.182 17 C 0.030 3.970 18 N -0.373 5.373 19 C 0.295 3.705 20 O -0.459 6.459 21 C -0.170 4.170 22 C 0.042 3.958 23 H 0.062 0.938 24 C -0.184 4.184 25 C -0.163 4.163 26 C -0.189 4.189 27 C -0.020 4.020 28 O -0.314 6.314 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.139 0.861 42 H 0.155 0.845 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.568 -28.236 11.290 31.593 hybrid contribution -0.338 1.092 0.717 1.349 sum 8.231 -27.144 12.006 30.801 Atomic orbital electron populations 1.69662 1.06811 1.29317 1.50259 1.26016 0.96519 1.02342 0.96204 0.84941 0.77921 0.76935 0.78622 1.19754 1.19467 1.19756 1.19677 0.92729 0.84100 1.50045 0.90360 1.41925 1.09345 1.04678 1.64996 1.20922 0.88270 0.86245 0.82213 1.90492 1.15940 1.87987 1.56698 1.21547 0.93961 0.87892 1.03317 1.60028 1.19203 1.00746 1.51637 1.21100 0.94578 0.86214 1.02140 1.22827 0.98738 0.94149 0.98805 1.22826 0.99665 0.95544 1.00148 1.20196 0.93440 0.97705 0.85665 1.45966 1.39370 1.35070 1.16884 1.21179 0.79470 0.79524 0.90330 1.90700 1.65601 1.41320 1.48269 1.21838 0.99831 1.00720 0.94594 1.21868 0.93125 0.83681 0.97081 0.93785 1.22205 0.98788 1.00198 0.97181 1.21620 0.97658 0.94076 1.02929 1.22169 0.99744 0.98909 0.98123 1.22638 0.93565 0.88948 0.96886 1.87923 1.34397 1.14563 1.94519 0.91278 0.76909 0.87722 0.91161 0.83610 0.89412 0.92931 0.87456 0.84751 0.92619 0.91356 0.74729 0.86111 0.84548 0.89158 0.90237 0.92115 0.89965 0.89689 0.91001 0.94094 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 10 C 0.44 20.51 7.82 87.66 0.69 21.20 16 11 O -0.62 -34.53 15.78 -3.06 -0.05 -34.57 16 12 C 0.07 2.14 6.17 85.56 0.53 2.67 16 13 N -0.68 -20.68 6.12 -521.97 -3.19 -23.87 16 14 C 0.09 1.84 6.12 85.56 0.52 2.36 16 15 C -0.13 -2.42 9.38 25.65 0.24 -2.18 16 16 C -0.16 -2.51 9.24 25.65 0.24 -2.28 16 17 C 0.15 2.78 6.11 85.63 0.52 3.30 16 18 N -0.72 -11.43 5.55 -466.79 -2.59 -14.02 16 19 C 0.51 10.23 7.71 87.66 0.68 10.91 16 20 O -0.58 -17.31 15.42 10.73 0.17 -17.15 16 21 C -0.13 -1.62 5.41 29.85 0.16 -1.46 16 22 C 0.10 1.60 2.19 30.63 0.07 1.66 16 23 H 0.04 0.87 7.96 -2.39 -0.02 0.85 16 24 C -0.15 -1.45 5.42 30.69 0.17 -1.29 16 25 C -0.13 -1.21 6.03 30.71 0.19 -1.02 16 26 C -0.15 -1.60 6.14 30.68 0.19 -1.41 16 27 C 0.06 0.88 6.84 72.01 0.49 1.37 16 28 O -0.39 -8.16 9.64 -135.21 -1.30 -9.46 16 29 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 31 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.35 10.96 8.42 -89.69 -0.76 10.20 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 0.92 7.79 -2.39 -0.02 0.90 16 36 H 0.11 2.33 7.84 -2.91 -0.02 2.31 16 37 H 0.13 1.60 7.84 -2.91 -0.02 1.57 16 38 H 0.06 1.20 7.79 -2.39 -0.02 1.18 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.42 4.14 8.46 -92.71 -0.78 3.35 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.14 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -76.47 414.93 -1.64 -78.12 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -1.32 Total: 40.34 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.96 Total: 15.54 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -7.12 Total: -117.41 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -1.19 Total: -61.18 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -76.47 -1.64 -78.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716280061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.641 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds