Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.94749 * 2 1 4 4 O 1.21284 * 119.99820 * 240.46455 * 3 2 1 5 5 N 1.34768 * 120.00100 * 60.45551 * 3 2 1 6 6 C 1.46504 * 119.99996 * 5.61657 * 5 3 2 7 7 C 1.53002 * 109.47119 * 104.62551 * 6 5 3 8 8 O 1.42902 * 109.47288 * 67.19340 * 7 6 5 9 9 C 1.46500 * 120.00356 * 185.61669 * 5 3 2 10 10 C 1.52997 * 109.47516 * 90.00227 * 9 5 3 11 11 N 1.46898 * 109.47289 * 180.02562 * 10 9 5 12 12 C 1.46893 * 111.00020 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47467 * 179.97438 * 12 11 10 14 14 O 1.21293 * 119.99757 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00326 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00202 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99874 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00236 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00220 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00141 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47331 * 89.99600 * 20 18 16 22 22 H 1.48497 * 109.47240 * 209.99990 * 20 18 16 23 23 H 1.48507 * 109.46692 * 329.99940 * 20 18 16 24 24 C 1.54635 * 111.03702 * 236.01140 * 2 1 3 25 25 C 1.51106 * 104.82695 * 217.39379 * 24 2 1 26 26 C 1.30533 * 111.09960 * 16.37977 * 25 24 2 27 27 C 1.51100 * 111.10399 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47352 * 193.07196 * 1 2 3 29 29 H 1.09008 * 109.47219 * 313.07876 * 1 2 3 30 30 H 1.09007 * 109.46962 * 73.07403 * 1 2 3 31 31 H 1.09000 * 109.47009 * 224.62188 * 6 5 3 32 32 H 1.08997 * 109.47069 * 344.62759 * 6 5 3 33 33 H 1.08999 * 109.46705 * 187.19096 * 7 6 5 34 34 H 1.09000 * 109.47054 * 307.19339 * 7 6 5 35 35 H 0.96696 * 113.99903 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.47361 * 210.00594 * 9 5 3 37 37 H 1.09003 * 109.46725 * 329.99694 * 9 5 3 38 38 H 1.09002 * 109.46622 * 300.00357 * 10 9 5 39 39 H 1.08995 * 109.47264 * 59.99797 * 10 9 5 40 40 H 1.00896 * 110.99666 * 303.95196 * 11 10 9 41 41 H 1.09003 * 109.47323 * 299.99701 * 12 11 10 42 42 H 1.08998 * 109.47220 * 60.00006 * 12 11 10 43 43 H 0.97005 * 119.99693 * 359.97438 * 15 13 12 44 44 H 0.97003 * 120.00047 * 180.02562 * 19 18 16 45 45 H 1.08997 * 110.39120 * 98.52439 * 24 2 1 46 46 H 1.08999 * 110.38605 * 336.26155 * 24 2 1 47 47 H 1.07995 * 124.45019 * 196.36186 * 25 24 2 48 48 H 1.08001 * 124.44575 * 179.97438 * 26 25 24 49 49 H 1.09000 * 110.38571 * 102.38235 * 27 26 25 50 50 H 1.09002 * 110.38714 * 224.63767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.7691 1.7886 -0.9139 5 7 1.7722 2.2425 1.0154 6 6 1.0302 1.7478 2.1777 7 6 1.9882 1.5736 3.3579 8 8 2.4585 2.8544 3.7828 9 6 2.1917 3.6449 0.9568 10 6 1.0952 4.4779 0.2901 11 7 1.5162 5.8841 0.2309 12 6 0.4860 6.7157 -0.4053 13 6 0.9520 8.1483 -0.4474 14 8 2.0357 8.4471 0.0081 15 7 0.1643 9.0975 -0.9904 16 6 0.5885 10.4006 -1.0292 17 1 1.5538 10.6665 -0.6243 18 6 -0.2233 11.3792 -1.5894 19 7 0.1831 12.6284 -1.6261 20 14 -1.8926 10.9192 -2.2904 21 1 -2.9227 11.0252 -1.2261 22 1 -2.2336 11.8417 -3.4030 23 1 -1.8485 9.5247 -2.7994 24 6 2.0850 -0.8068 -1.1967 25 6 3.3070 -1.5112 -0.6546 26 6 3.3086 -1.5119 0.6507 27 6 2.0884 -0.8076 1.1966 28 1 -0.3634 -1.0010 0.2324 29 1 -0.3634 0.7019 0.7507 30 1 -0.3633 0.2992 -0.9832 31 1 0.2524 2.4636 2.4438 32 1 0.5736 0.7882 1.9358 33 1 1.4654 1.0871 4.1814 34 1 2.8346 0.9592 3.0512 35 1 3.0721 2.8203 4.5293 36 1 2.3652 4.0148 1.9674 37 1 3.1118 3.7250 0.3778 38 1 0.9219 4.1080 -0.7205 39 1 0.1753 4.3978 0.8691 40 1 1.7455 6.2318 1.1498 41 1 0.3085 6.3610 -1.4206 42 1 -0.4383 6.6515 0.1688 43 1 -0.7025 8.8586 -1.3543 44 1 -0.3839 13.3116 -2.0169 45 1 2.3627 -0.1368 -2.0104 46 1 1.3484 -1.5337 -1.5390 47 1 4.0776 -1.9559 -1.2667 48 1 4.0808 -1.9574 1.2604 49 1 1.3515 -1.5345 1.5383 50 1 2.3681 -0.1400 2.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717059268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -75.345358 kcal Electronic energy + Delta-G solvation = -30094.951435 eV Core-core repulsion = 25930.607524 eV Total energy + Delta-G solvation = -4164.343911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30189 -38.51196 -38.15256 -37.49608 -36.04059 -35.01579 -33.84140 -32.37281 -31.61508 -30.51616 -28.78004 -28.49913 -26.31607 -25.97310 -23.97534 -23.48805 -22.58747 -21.28897 -19.57711 -19.30715 -18.83360 -18.26315 -17.83646 -17.27666 -16.56847 -16.27629 -15.95521 -15.61060 -15.49199 -14.93741 -14.78933 -14.54906 -14.23687 -13.88489 -13.86125 -13.54135 -13.28798 -13.14123 -13.04737 -12.93585 -12.72769 -12.54602 -12.40480 -12.31048 -12.10128 -11.84496 -11.80675 -11.63685 -11.55574 -11.51308 -11.15871 -11.06670 -10.88080 -10.55800 -10.36093 -9.93514 -9.86674 -9.52705 -9.24695 -8.89695 -8.50510 -8.14558 -8.06421 -6.26720 -3.77857 1.92069 2.41676 2.68416 3.06598 3.09806 3.17943 3.75706 3.79949 3.94104 4.04822 4.13979 4.20383 4.30920 4.48042 4.59485 4.64412 4.78204 4.86339 4.90597 4.94748 5.02486 5.09934 5.17614 5.21213 5.24171 5.25684 5.30041 5.33383 5.38730 5.50805 5.59576 5.62625 5.66855 5.69593 5.74647 5.86430 5.95760 5.98442 6.11603 6.18304 6.37597 6.52203 7.12759 7.17219 7.26429 7.62832 7.66543 8.00990 8.19421 8.64809 8.99712 9.47236 9.88161 10.86500 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.002130 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.197478 B =13145.262004 C =13733.304496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C 0.527 3.473 4 O -0.524 6.524 5 N -0.602 5.602 6 C 0.089 3.911 7 C 0.053 3.947 8 O -0.564 6.564 9 C 0.114 3.886 10 C 0.050 3.950 11 N -0.664 5.664 12 C 0.051 3.949 13 C 0.451 3.549 14 O -0.563 6.563 15 N -0.592 5.592 16 C -0.303 4.303 17 H 0.120 0.880 18 C 0.040 3.960 19 N -0.882 5.882 20 Si 0.880 3.120 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.087 4.087 25 C -0.149 4.149 26 C -0.181 4.181 27 C -0.103 4.103 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.380 0.620 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.351 0.649 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.086 0.914 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -33.849 9.674 35.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C 0.314 3.686 4 O -0.399 6.399 5 N -0.335 5.335 6 C -0.034 4.034 7 C -0.025 4.025 8 O -0.370 6.370 9 C -0.008 4.008 10 C -0.081 4.081 11 N -0.297 5.297 12 C -0.082 4.082 13 C 0.237 3.763 14 O -0.444 6.444 15 N -0.232 5.232 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.163 4.163 19 N -0.523 5.523 20 Si 0.706 3.294 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.124 4.124 25 C -0.167 4.167 26 C -0.199 4.199 27 C -0.140 4.140 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.171 0.829 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.104 0.896 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.531 -33.066 8.356 34.140 hybrid contribution -1.721 -0.397 0.571 1.856 sum -3.252 -33.463 8.927 34.785 Atomic orbital electron populations 1.22086 0.91760 1.03084 1.03537 1.21643 0.96912 0.92606 0.98185 1.20301 0.80019 0.86523 0.81710 1.90720 1.36664 1.76872 1.35600 1.47735 1.56621 1.10432 1.18726 1.22173 0.94350 1.02129 0.84750 1.22852 0.97463 0.85878 0.96341 1.86533 1.67006 1.28813 1.54666 1.21530 0.98124 0.78284 1.02878 1.22247 0.96064 0.89189 1.00614 1.59904 1.41588 1.00225 1.28026 1.21686 0.92919 0.93182 1.00440 1.19709 0.86493 0.85996 0.84091 1.90566 1.21978 1.81935 1.49970 1.42205 1.17734 1.08366 1.54860 1.19438 1.05690 0.80635 1.37438 0.86269 1.25039 0.98385 0.95105 0.97728 1.69627 1.37577 1.00311 1.44756 0.86665 0.84361 0.78622 0.79719 1.19705 1.20188 1.19467 1.21383 0.95507 0.97912 0.97565 1.23281 0.98107 0.99100 0.96245 1.23169 0.98538 1.01805 0.96347 1.21904 0.96498 0.98347 0.97205 0.90996 0.91019 0.91326 0.89788 0.87046 0.92531 0.92796 0.77247 0.88485 0.89072 0.91234 0.95787 0.82950 0.89534 0.93863 0.79714 0.91667 0.89076 0.89903 0.85655 0.85738 0.89568 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.08 37.15 0.30 -0.53 16 2 C -0.09 -0.71 0.59 -153.86 -0.09 -0.80 16 3 C 0.53 6.14 6.52 -10.99 -0.07 6.07 16 4 O -0.52 -8.45 15.06 5.55 0.08 -8.36 16 5 N -0.60 -6.15 2.51 -173.69 -0.44 -6.59 16 6 C 0.09 0.59 4.41 -4.04 -0.02 0.57 16 7 C 0.05 0.30 6.67 37.16 0.25 0.55 16 8 O -0.56 -4.19 11.40 -35.23 -0.40 -4.59 16 9 C 0.11 1.46 5.59 -4.04 -0.02 1.44 16 10 C 0.05 0.68 6.01 -3.83 -0.02 0.66 16 11 N -0.66 -11.36 6.13 -115.06 -0.70 -12.06 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 13 C 0.45 10.75 7.82 -10.99 -0.09 10.67 16 14 O -0.56 -15.75 15.78 5.55 0.09 -15.66 16 15 N -0.59 -14.64 5.09 -10.96 -0.06 -14.69 16 16 C -0.30 -8.82 10.16 -14.94 -0.15 -8.97 16 17 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -26.29 13.96 55.50 0.77 -25.51 16 20 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 24 C -0.09 -0.73 5.75 -26.83 -0.15 -0.89 16 25 C -0.15 -1.21 10.78 -35.70 -0.38 -1.60 16 26 C -0.18 -1.30 10.78 -35.70 -0.38 -1.68 16 27 C -0.10 -0.62 4.78 -26.74 -0.13 -0.75 16 28 H 0.07 0.27 7.82 -51.93 -0.41 -0.14 16 29 H 0.07 0.36 5.22 -51.92 -0.27 0.09 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.11 0.50 3.30 -51.93 -0.17 0.33 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.05 0.31 6.08 -51.93 -0.32 -0.01 16 35 H 0.38 1.36 9.12 45.56 0.42 1.78 16 36 H 0.10 1.20 5.92 -51.93 -0.31 0.89 16 37 H 0.09 1.42 7.35 -51.93 -0.38 1.04 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.35 6.05 8.43 -39.29 -0.33 5.71 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.37 8.04 5.76 -40.82 -0.24 7.80 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.09 0.98 6.95 -51.93 -0.36 0.62 16 46 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.09 0.35 7.68 -51.93 -0.40 -0.05 16 50 H 0.08 0.47 3.37 -51.93 -0.18 0.30 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -37.50 391.69 -7.27 -44.76 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -6.71 Total: 15.06 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.09 Total: 6.64 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.42 Total: -58.86 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.23 Total: -28.61 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.50 -7.27 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717059268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.584 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds