Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.94749 * 2 1 4 4 O 1.21284 * 119.99820 * 240.46455 * 3 2 1 5 5 N 1.34768 * 120.00100 * 60.45551 * 3 2 1 6 6 C 1.46504 * 119.99996 * 5.61657 * 5 3 2 7 7 C 1.53002 * 109.47119 * 104.62551 * 6 5 3 8 8 O 1.42902 * 109.47288 * 67.19340 * 7 6 5 9 9 C 1.46500 * 120.00356 * 185.61669 * 5 3 2 10 10 C 1.52997 * 109.47516 * 90.00227 * 9 5 3 11 11 N 1.46898 * 109.47289 * 180.02562 * 10 9 5 12 12 C 1.46893 * 111.00020 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47467 * 179.97438 * 12 11 10 14 14 O 1.21293 * 119.99757 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00326 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00202 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99874 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00236 * 179.97438 * 16 15 13 19 19 N 1.31417 * 120.00220 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00141 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47331 * 89.99600 * 20 18 16 22 22 H 1.48497 * 109.47240 * 209.99990 * 20 18 16 23 23 H 1.48507 * 109.46692 * 329.99940 * 20 18 16 24 24 C 1.54635 * 111.03702 * 236.01140 * 2 1 3 25 25 C 1.51106 * 104.82695 * 217.39379 * 24 2 1 26 26 C 1.30533 * 111.09960 * 16.37977 * 25 24 2 27 27 C 1.51100 * 111.10399 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47352 * 193.07196 * 1 2 3 29 29 H 1.09008 * 109.47219 * 313.07876 * 1 2 3 30 30 H 1.09007 * 109.46962 * 73.07403 * 1 2 3 31 31 H 1.09000 * 109.47009 * 224.62188 * 6 5 3 32 32 H 1.08997 * 109.47069 * 344.62759 * 6 5 3 33 33 H 1.08999 * 109.46705 * 187.19096 * 7 6 5 34 34 H 1.09000 * 109.47054 * 307.19339 * 7 6 5 35 35 H 0.96696 * 113.99903 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.47361 * 210.00594 * 9 5 3 37 37 H 1.09003 * 109.46725 * 329.99694 * 9 5 3 38 38 H 1.09002 * 109.46622 * 300.00357 * 10 9 5 39 39 H 1.08995 * 109.47264 * 59.99797 * 10 9 5 40 40 H 1.00896 * 110.99666 * 303.95196 * 11 10 9 41 41 H 1.09003 * 109.47323 * 299.99701 * 12 11 10 42 42 H 1.08998 * 109.47220 * 60.00006 * 12 11 10 43 43 H 0.97005 * 119.99693 * 359.97438 * 15 13 12 44 44 H 0.97003 * 120.00047 * 180.02562 * 19 18 16 45 45 H 1.08997 * 110.39120 * 98.52439 * 24 2 1 46 46 H 1.08999 * 110.38605 * 336.26155 * 24 2 1 47 47 H 1.07995 * 124.45019 * 196.36186 * 25 24 2 48 48 H 1.08001 * 124.44575 * 179.97438 * 26 25 24 49 49 H 1.09000 * 110.38571 * 102.38235 * 27 26 25 50 50 H 1.09002 * 110.38714 * 224.63767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.7691 1.7886 -0.9139 5 7 1.7722 2.2425 1.0154 6 6 1.0302 1.7478 2.1777 7 6 1.9882 1.5736 3.3579 8 8 2.4585 2.8544 3.7828 9 6 2.1917 3.6449 0.9568 10 6 1.0952 4.4779 0.2901 11 7 1.5162 5.8841 0.2309 12 6 0.4860 6.7157 -0.4053 13 6 0.9520 8.1483 -0.4474 14 8 2.0357 8.4471 0.0081 15 7 0.1643 9.0975 -0.9904 16 6 0.5885 10.4006 -1.0292 17 1 1.5538 10.6665 -0.6243 18 6 -0.2233 11.3792 -1.5894 19 7 0.1831 12.6284 -1.6261 20 14 -1.8926 10.9192 -2.2904 21 1 -2.9227 11.0252 -1.2261 22 1 -2.2336 11.8417 -3.4030 23 1 -1.8485 9.5247 -2.7994 24 6 2.0850 -0.8068 -1.1967 25 6 3.3070 -1.5112 -0.6546 26 6 3.3086 -1.5119 0.6507 27 6 2.0884 -0.8076 1.1966 28 1 -0.3634 -1.0010 0.2324 29 1 -0.3634 0.7019 0.7507 30 1 -0.3633 0.2992 -0.9832 31 1 0.2524 2.4636 2.4438 32 1 0.5736 0.7882 1.9358 33 1 1.4654 1.0871 4.1814 34 1 2.8346 0.9592 3.0512 35 1 3.0721 2.8203 4.5293 36 1 2.3652 4.0148 1.9674 37 1 3.1118 3.7250 0.3778 38 1 0.9219 4.1080 -0.7205 39 1 0.1753 4.3978 0.8691 40 1 1.7455 6.2318 1.1498 41 1 0.3085 6.3610 -1.4206 42 1 -0.4383 6.6515 0.1688 43 1 -0.7025 8.8586 -1.3543 44 1 -0.3839 13.3116 -2.0169 45 1 2.3627 -0.1368 -2.0104 46 1 1.3484 -1.5337 -1.5390 47 1 4.0776 -1.9559 -1.2667 48 1 4.0808 -1.9574 1.2604 49 1 1.3515 -1.5345 1.5383 50 1 2.3681 -0.1400 2.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717059268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -107.234569 kcal Electronic energy + Delta-G solvation = -30096.334254 eV Core-core repulsion = 25930.607524 eV Total energy + Delta-G solvation = -4165.726731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.02880 -40.34346 -38.91688 -38.18568 -37.16098 -36.14651 -35.74652 -33.77564 -33.02786 -31.33609 -29.78966 -29.03884 -27.78683 -26.60407 -25.60368 -24.11664 -23.67132 -22.11589 -21.32218 -20.35739 -20.07121 -19.49224 -18.35646 -17.91754 -17.89740 -17.36651 -17.19256 -16.77295 -16.66270 -16.15976 -15.85712 -15.45363 -15.31100 -15.25308 -14.83140 -14.78317 -14.48040 -14.26938 -14.08494 -13.84625 -13.64779 -13.59673 -13.45583 -13.25934 -13.12941 -12.98701 -12.83608 -12.59757 -12.49007 -12.43099 -12.17761 -12.03987 -11.99301 -11.94912 -11.55590 -11.53162 -10.84957 -10.72029 -10.50085 -10.27043 -9.82356 -9.69093 -9.38872 -8.42609 -6.03905 1.29676 1.34382 1.36392 1.43911 1.57395 1.86632 1.92019 2.22081 2.74191 3.13243 3.30845 3.37511 3.43284 3.52371 3.66211 3.95767 4.00196 4.09910 4.15123 4.16909 4.22335 4.31673 4.38215 4.38730 4.48043 4.54106 4.54473 4.61649 4.69807 4.74359 4.79954 4.81127 4.92067 4.93879 5.00164 5.05509 5.07544 5.16022 5.27752 5.47315 5.53141 5.64092 5.86544 5.96556 5.98916 6.31696 6.40676 6.57689 6.85579 6.93189 7.15967 7.36797 7.93071 8.75016 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.002130 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.197478 B =13145.262004 C =13733.304496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C 0.519 3.481 4 O -0.582 6.582 5 N -0.597 5.597 6 C 0.081 3.919 7 C 0.052 3.948 8 O -0.591 6.591 9 C 0.123 3.877 10 C 0.061 3.939 11 N -0.687 5.687 12 C 0.065 3.935 13 C 0.448 3.552 14 O -0.614 6.614 15 N -0.589 5.589 16 C -0.330 4.330 17 H 0.055 0.945 18 C -0.016 4.016 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.254 1.254 22 H -0.274 1.274 23 H -0.234 1.234 24 C -0.089 4.089 25 C -0.177 4.177 26 C -0.178 4.178 27 C -0.100 4.100 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.394 0.606 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.348 0.652 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.390 0.610 44 H 0.280 0.720 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.125 0.875 48 H 0.138 0.862 49 H 0.120 0.880 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -37.280 10.828 39.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C 0.308 3.692 4 O -0.461 6.461 5 N -0.328 5.328 6 C -0.040 4.040 7 C -0.026 4.026 8 O -0.400 6.400 9 C -0.001 4.001 10 C -0.069 4.069 11 N -0.321 5.321 12 C -0.067 4.067 13 C 0.236 3.764 14 O -0.498 6.498 15 N -0.231 5.231 16 C -0.459 4.459 17 H 0.073 0.927 18 C -0.215 4.215 19 N -0.574 5.574 20 Si 0.786 3.214 21 H -0.178 1.178 22 H -0.199 1.199 23 H -0.157 1.157 24 C -0.126 4.126 25 C -0.195 4.195 26 C -0.195 4.195 27 C -0.136 4.136 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.167 0.833 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.143 0.857 48 H 0.156 0.844 49 H 0.138 0.862 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.471 -36.543 9.556 38.166 hybrid contribution -0.333 0.701 0.291 0.829 sum -5.805 -35.842 9.846 37.620 Atomic orbital electron populations 1.22132 0.89525 1.05156 1.03438 1.21682 0.98471 0.89933 0.98872 1.21109 0.79120 0.88033 0.80920 1.90695 1.39350 1.78215 1.37856 1.47800 1.56279 1.09098 1.19630 1.22548 0.94447 1.03409 0.83628 1.22942 0.97463 0.85355 0.96888 1.86473 1.67685 1.30125 1.55688 1.21251 0.96472 0.80133 1.02223 1.22169 0.97228 0.87045 1.00464 1.59858 1.42328 1.01774 1.28097 1.21595 0.94131 0.88574 1.02434 1.20909 0.85461 0.88219 0.81796 1.90544 1.24335 1.83331 1.51595 1.42013 1.18755 1.06882 1.55459 1.19013 1.04230 0.83422 1.39256 0.92701 1.26146 1.03766 0.94342 0.97197 1.69809 1.40031 1.02015 1.45519 0.85343 0.76904 0.80118 0.79021 1.17780 1.19915 1.15731 1.21395 0.96393 0.97793 0.97002 1.23403 0.98597 1.00468 0.97049 1.23478 0.99115 1.00816 0.96119 1.21998 0.96672 0.98684 0.96256 0.88095 0.89943 0.92371 0.89244 0.84455 0.89244 0.93026 0.75565 0.87967 0.92917 0.92373 0.93037 0.83263 0.87579 0.89953 0.77425 0.91075 0.92465 0.87969 0.85674 0.84398 0.86207 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.08 71.98 0.58 -0.57 16 2 C -0.09 -1.21 0.59 -51.76 -0.03 -1.24 16 3 C 0.52 11.96 6.52 87.66 0.57 12.53 16 4 O -0.58 -19.88 15.06 -3.04 -0.05 -19.93 16 5 N -0.60 -11.49 2.51 -821.82 -2.06 -13.55 16 6 C 0.08 0.82 4.41 86.38 0.38 1.20 16 7 C 0.05 0.42 6.67 71.98 0.48 0.90 16 8 O -0.59 -7.65 11.40 -148.98 -1.70 -9.35 16 9 C 0.12 3.14 5.59 86.38 0.48 3.62 16 10 C 0.06 1.59 6.01 86.30 0.52 2.11 16 11 N -0.69 -23.06 6.13 -517.95 -3.17 -26.24 16 12 C 0.07 2.19 6.17 85.56 0.53 2.72 16 13 C 0.45 21.44 7.82 87.66 0.69 22.13 16 14 O -0.61 -35.83 15.78 -3.07 -0.05 -35.88 16 15 N -0.59 -28.98 5.09 -306.99 -1.56 -30.54 16 16 C -0.33 -19.93 10.16 84.04 0.85 -19.08 16 17 H 0.05 3.94 7.39 -2.91 -0.02 3.91 16 18 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 19 N -0.93 -57.29 13.96 21.66 0.30 -56.99 16 20 Si 0.97 39.64 27.74 68.60 1.90 41.54 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.23 -8.20 6.52 99.48 0.65 -7.55 16 24 C -0.09 -1.47 5.75 30.53 0.18 -1.29 16 25 C -0.18 -2.81 10.78 26.26 0.28 -2.52 16 26 C -0.18 -2.22 10.78 26.25 0.28 -1.94 16 27 C -0.10 -0.88 4.78 30.59 0.15 -0.74 16 28 H 0.10 0.25 7.82 -2.39 -0.02 0.23 16 29 H 0.08 0.47 5.22 -2.38 -0.01 0.46 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.14 0.63 3.30 -2.39 -0.01 0.63 16 33 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.05 0.45 6.08 -2.39 -0.01 0.43 16 35 H 0.39 2.19 9.12 -74.06 -0.68 1.51 16 36 H 0.10 2.50 5.92 -2.39 -0.01 2.49 16 37 H 0.05 1.75 7.35 -2.39 -0.02 1.74 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.35 11.97 8.43 -89.70 -0.76 11.22 16 41 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.39 15.86 5.76 -92.70 -0.53 15.33 16 44 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.06 1.34 6.95 -2.39 -0.02 1.32 16 46 H 0.10 1.20 7.89 -2.39 -0.02 1.18 16 47 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 49 H 0.12 0.33 7.68 -2.39 -0.02 0.31 16 50 H 0.09 0.71 3.37 -2.39 -0.01 0.70 16 Total: -1.00 -90.40 391.69 -1.00 -91.40 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.03 Total: 42.13 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.41 Total: 17.40 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -6.49 Total: -127.31 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -1.79 Total: -65.15 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.90 Total: 41.54 kcal Total: -90.40 -1.00 -91.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717059268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.837 kcal (2) G-P(sol) polarization free energy of solvation -90.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds