Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99499 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99442 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46977 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47120 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.88853 * 57.43068 * 16 15 14 18 18 C 1.55158 * 111.00423 * 293.54936 * 16 15 14 19 19 C 1.54328 * 102.94053 * 206.42392 * 18 16 15 20 20 N 1.47019 * 107.27332 * 22.19280 * 19 18 16 21 21 C 1.34770 * 125.64898 * 181.01153 * 20 19 18 22 22 O 1.21284 * 120.00418 * 180.02562 * 21 20 19 23 23 C 1.50702 * 120.00304 * 0.02747 * 21 20 19 24 24 H 1.09007 * 109.82012 * 55.56273 * 23 21 20 25 25 C 1.54382 * 109.82632 * 294.58740 * 23 21 20 26 26 C 1.55310 * 102.25154 * 219.12521 * 25 23 21 27 27 C 1.54949 * 100.93849 * 34.13184 * 26 25 23 28 28 O 1.43233 * 109.83281 * 176.45175 * 23 21 20 29 29 C 1.47425 * 108.70148 * 1.06127 * 20 19 18 30 30 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.00895 * 110.99935 * 56.04274 * 13 12 10 35 35 H 1.08997 * 109.46919 * 300.00265 * 14 13 12 36 36 H 1.09005 * 109.46998 * 59.99725 * 14 13 12 37 37 H 1.08998 * 109.47432 * 300.00440 * 15 14 13 38 38 H 1.09005 * 109.47140 * 60.00230 * 15 14 13 39 39 H 1.09003 * 110.72237 * 324.78556 * 18 16 15 40 40 H 1.08994 * 110.71833 * 87.88399 * 18 16 15 41 41 H 1.09000 * 109.88153 * 141.61361 * 19 18 16 42 42 H 1.09001 * 109.88111 * 262.77012 * 19 18 16 43 43 H 1.08992 * 110.85143 * 337.31336 * 25 23 21 44 44 H 1.09000 * 110.85015 * 100.94110 * 25 23 21 45 45 H 1.09001 * 111.12623 * 276.22040 * 26 25 23 46 46 H 1.08998 * 111.16199 * 152.06956 * 26 25 23 47 47 H 1.08999 * 110.30925 * 204.64114 * 27 26 25 48 48 H 1.09006 * 110.38822 * 82.51568 * 27 26 25 49 49 H 1.09002 * 110.36309 * 217.03082 * 29 20 19 50 50 H 1.08998 * 110.37154 * 94.71221 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 6 2.5231 -8.4067 -0.0193 16 6 1.7938 -9.7517 -0.0257 17 1 1.1269 -9.8280 -0.8845 18 6 1.0194 -9.9708 1.3008 19 6 0.9566 -11.5086 1.4144 20 7 2.0501 -12.0518 0.5956 21 6 2.3226 -13.3595 0.4168 22 8 3.2546 -13.6947 -0.2832 23 6 1.4692 -14.4056 1.0866 24 1 0.4238 -14.2592 0.8148 25 6 1.6322 -14.3117 2.6189 26 6 1.6423 -15.8061 3.0415 27 6 2.3588 -16.4500 1.8278 28 8 1.8973 -15.7121 0.6850 29 6 2.8000 -10.9291 0.0034 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6165 -4.9246 0.8846 33 1 0.6178 -4.9168 -0.8953 34 1 2.8328 -5.9158 0.7732 35 1 0.8729 -7.3489 0.8749 36 1 0.8736 -7.3416 -0.9050 37 1 3.1481 -8.3284 -0.9088 38 1 3.1480 -8.3361 0.8711 39 1 1.5663 -9.5441 2.1417 40 1 0.0182 -9.5448 1.2378 41 1 1.0872 -11.8092 2.4539 42 1 -0.0015 -11.8691 1.0397 43 1 2.5735 -13.8284 2.8801 44 1 0.7882 -13.7875 3.0674 45 1 0.6281 -16.1911 3.1484 46 1 2.2140 -15.9520 3.9580 47 1 2.0806 -17.5000 1.7376 48 1 3.4397 -16.3530 1.9296 49 1 3.1211 -11.1789 -1.0078 50 1 3.6600 -10.6779 0.6242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717071011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -120.197162 kcal Electronic energy + Delta-G solvation = -28576.097651 eV Core-core repulsion = 24409.808819 eV Total energy + Delta-G solvation = -4166.288831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.96805 -39.40372 -38.32582 -37.74645 -35.86015 -33.96822 -33.34122 -32.52666 -31.23364 -30.49141 -30.15352 -28.40706 -26.14541 -24.64936 -23.76683 -22.97293 -22.31112 -22.09366 -20.57496 -19.71103 -19.19201 -18.12515 -17.88439 -17.04009 -16.58094 -16.28616 -16.14796 -15.76183 -15.66296 -15.03225 -14.51653 -14.46834 -14.30922 -14.19320 -13.92627 -13.78972 -13.68423 -13.38013 -13.13625 -13.02375 -12.65821 -12.43198 -12.34174 -12.27137 -12.07455 -11.87383 -11.60094 -11.58366 -11.52678 -11.38372 -11.12270 -11.06511 -10.96077 -10.75220 -10.66076 -10.34712 -10.22954 -9.69365 -9.52615 -9.02915 -8.46761 -8.06039 -7.96337 -6.42491 -3.83266 2.21468 2.41786 3.15935 3.26578 3.33991 3.35305 3.76840 3.89402 3.91057 4.04201 4.16408 4.20207 4.25359 4.34677 4.46548 4.56776 4.58532 4.74963 4.77446 4.94389 5.01026 5.04056 5.13264 5.16269 5.16747 5.21819 5.23918 5.25352 5.26567 5.39380 5.44314 5.47046 5.49765 5.55215 5.63348 5.75220 5.78728 5.90872 5.97355 6.09523 6.12515 6.26926 6.36679 7.09908 7.21857 7.54884 7.66054 7.80596 8.06138 8.60716 9.17489 9.53810 10.05275 10.75355 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042889 B = 0.001394 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.689743 B =20085.421273 C =20332.736170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.671 5.671 14 C 0.061 3.939 15 C -0.106 4.106 16 C -0.097 4.097 17 H 0.088 0.912 18 C -0.129 4.129 19 C 0.095 3.905 20 N -0.618 5.618 21 C 0.515 3.485 22 O -0.522 6.522 23 C 0.070 3.930 24 H 0.106 0.894 25 C -0.146 4.146 26 C -0.155 4.155 27 C 0.047 3.953 28 O -0.353 6.353 29 C 0.110 3.890 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.349 0.651 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -30.219 7.929 31.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.303 5.303 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.117 4.117 17 H 0.106 0.894 18 C -0.167 4.167 19 C -0.027 4.027 20 N -0.355 5.355 21 C 0.302 3.698 22 O -0.397 6.397 23 C 0.009 3.991 24 H 0.124 0.876 25 C -0.183 4.183 26 C -0.192 4.192 27 C -0.030 4.030 28 O -0.270 6.270 29 C -0.012 4.012 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.912 -30.415 6.643 31.267 hybrid contribution -0.713 1.006 1.142 1.681 sum -3.625 -29.408 7.785 30.637 Atomic orbital electron populations 1.69619 1.05942 1.28044 1.50756 1.25258 0.95631 0.99717 0.97333 0.85801 0.79735 0.81124 0.77695 1.19202 1.20732 1.20787 1.19764 0.93423 0.82243 1.47435 0.87860 1.41874 1.09194 1.04623 1.64416 1.19836 0.88403 0.84758 0.84435 1.90524 1.13777 1.87077 1.55339 1.21661 0.94341 0.91003 1.01121 1.60053 1.18946 1.00040 1.51270 1.21943 0.95593 0.88971 1.00356 1.21470 0.98057 0.91442 1.03500 1.22368 0.96970 0.94174 0.98197 0.89396 1.22761 1.02053 0.93482 0.98416 1.22187 0.90219 0.95036 0.95307 1.48493 1.32204 1.04960 1.49809 1.20691 0.85470 0.81872 0.81761 1.90735 1.30256 1.80299 1.38432 1.22584 0.98032 0.84032 0.94485 0.87621 1.23137 1.04129 0.98232 0.92844 1.23291 1.02314 0.94305 0.99316 1.23498 0.98709 0.96505 0.84254 1.88533 1.83587 1.23112 1.31789 1.22316 0.94617 0.84711 0.99536 0.91938 0.77474 0.93971 0.89646 0.83226 0.95507 0.91173 0.90285 0.91538 0.90138 0.89587 0.91141 0.91230 0.89930 0.88809 0.89809 0.89326 0.89038 0.91809 0.90175 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.35 7.82 -10.98 -0.09 10.27 16 11 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.43 6.13 -115.06 -0.70 -11.14 16 14 C 0.06 0.66 5.53 -3.83 -0.02 0.64 16 15 C -0.11 -0.97 4.99 -26.74 -0.13 -1.10 16 16 C -0.10 -0.72 3.07 -88.47 -0.27 -0.99 16 17 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 18 C -0.13 -0.72 5.59 -24.89 -0.14 -0.86 16 19 C 0.10 0.50 6.13 -3.06 -0.02 0.48 16 20 N -0.62 -5.29 3.33 -170.52 -0.57 -5.86 16 21 C 0.51 5.61 7.09 -10.99 -0.08 5.53 16 22 O -0.52 -8.15 16.78 -14.10 -0.24 -8.38 16 23 C 0.07 0.55 3.37 -27.16 -0.09 0.46 16 24 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 25 C -0.15 -0.70 5.24 -24.78 -0.13 -0.83 16 26 C -0.15 -0.62 7.16 -24.48 -0.18 -0.79 16 27 C 0.05 0.30 7.78 38.19 0.30 0.60 16 28 O -0.35 -3.60 10.56 -54.88 -0.58 -4.18 16 29 C 0.11 0.98 6.38 -2.53 -0.02 0.96 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 31 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 35 H 0.03 0.26 7.51 -51.93 -0.39 -0.13 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.60 8.11 -51.93 -0.42 0.17 16 39 H 0.08 0.45 8.01 -51.93 -0.42 0.04 16 40 H 0.09 0.41 8.13 -51.93 -0.42 -0.01 16 41 H 0.07 0.27 6.53 -51.93 -0.34 -0.07 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.46 7.84 -51.93 -0.41 0.06 16 44 H 0.09 0.24 7.38 -51.93 -0.38 -0.14 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 50 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -35.57 404.22 -9.83 -45.40 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.43 Total: 8.65 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.14 Total: 7.24 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.61 Total: -55.00 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.73 Total: -28.33 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.57 -9.83 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717071011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.795 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds