Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46534 * 299.99499 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99442 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46977 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47120 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.88853 * 57.43068 * 16 15 14 18 18 C 1.55158 * 111.00423 * 293.54936 * 16 15 14 19 19 C 1.54328 * 102.94053 * 206.42392 * 18 16 15 20 20 N 1.47019 * 107.27332 * 22.19280 * 19 18 16 21 21 C 1.34770 * 125.64898 * 181.01153 * 20 19 18 22 22 O 1.21284 * 120.00418 * 180.02562 * 21 20 19 23 23 C 1.50702 * 120.00304 * 0.02747 * 21 20 19 24 24 H 1.09007 * 109.82012 * 55.56273 * 23 21 20 25 25 C 1.54382 * 109.82632 * 294.58740 * 23 21 20 26 26 C 1.55310 * 102.25154 * 219.12521 * 25 23 21 27 27 C 1.54949 * 100.93849 * 34.13184 * 26 25 23 28 28 O 1.43233 * 109.83281 * 176.45175 * 23 21 20 29 29 C 1.47425 * 108.70148 * 1.06127 * 20 19 18 30 30 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.00895 * 110.99935 * 56.04274 * 13 12 10 35 35 H 1.08997 * 109.46919 * 300.00265 * 14 13 12 36 36 H 1.09005 * 109.46998 * 59.99725 * 14 13 12 37 37 H 1.08998 * 109.47432 * 300.00440 * 15 14 13 38 38 H 1.09005 * 109.47140 * 60.00230 * 15 14 13 39 39 H 1.09003 * 110.72237 * 324.78556 * 18 16 15 40 40 H 1.08994 * 110.71833 * 87.88399 * 18 16 15 41 41 H 1.09000 * 109.88153 * 141.61361 * 19 18 16 42 42 H 1.09001 * 109.88111 * 262.77012 * 19 18 16 43 43 H 1.08992 * 110.85143 * 337.31336 * 25 23 21 44 44 H 1.09000 * 110.85015 * 100.94110 * 25 23 21 45 45 H 1.09001 * 111.12623 * 276.22040 * 26 25 23 46 46 H 1.08998 * 111.16199 * 152.06956 * 26 25 23 47 47 H 1.08999 * 110.30925 * 204.64114 * 27 26 25 48 48 H 1.09006 * 110.38822 * 82.51568 * 27 26 25 49 49 H 1.09002 * 110.36309 * 217.03082 * 29 20 19 50 50 H 1.08998 * 110.37154 * 94.71221 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 6 2.5231 -8.4067 -0.0193 16 6 1.7938 -9.7517 -0.0257 17 1 1.1269 -9.8280 -0.8845 18 6 1.0194 -9.9708 1.3008 19 6 0.9566 -11.5086 1.4144 20 7 2.0501 -12.0518 0.5956 21 6 2.3226 -13.3595 0.4168 22 8 3.2546 -13.6947 -0.2832 23 6 1.4692 -14.4056 1.0866 24 1 0.4238 -14.2592 0.8148 25 6 1.6322 -14.3117 2.6189 26 6 1.6423 -15.8061 3.0415 27 6 2.3588 -16.4500 1.8278 28 8 1.8973 -15.7121 0.6850 29 6 2.8000 -10.9291 0.0034 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6165 -4.9246 0.8846 33 1 0.6178 -4.9168 -0.8953 34 1 2.8328 -5.9158 0.7732 35 1 0.8729 -7.3489 0.8749 36 1 0.8736 -7.3416 -0.9050 37 1 3.1481 -8.3284 -0.9088 38 1 3.1480 -8.3361 0.8711 39 1 1.5663 -9.5441 2.1417 40 1 0.0182 -9.5448 1.2378 41 1 1.0872 -11.8092 2.4539 42 1 -0.0015 -11.8691 1.0397 43 1 2.5735 -13.8284 2.8801 44 1 0.7882 -13.7875 3.0674 45 1 0.6281 -16.1911 3.1484 46 1 2.2140 -15.9520 3.9580 47 1 2.0806 -17.5000 1.7376 48 1 3.4397 -16.3530 1.9296 49 1 3.1211 -11.1789 -1.0078 50 1 3.6600 -10.6779 0.6242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717071011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -146.621071 kcal Electronic energy + Delta-G solvation = -28577.243477 eV Core-core repulsion = 24409.808819 eV Total energy + Delta-G solvation = -4167.434658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.62766 -40.18477 -39.92800 -38.59648 -37.00270 -35.88806 -34.23860 -33.26555 -33.05202 -31.19195 -30.71700 -29.35263 -27.56876 -25.87942 -24.83062 -23.50735 -22.98237 -22.69920 -21.37129 -20.92065 -20.33521 -19.88084 -18.72947 -17.82362 -17.59057 -17.20327 -16.99771 -16.91370 -16.48844 -16.38803 -15.94529 -15.76240 -15.38033 -15.15741 -14.83137 -14.77172 -14.45176 -14.25054 -14.00705 -13.87798 -13.70187 -13.54152 -13.30855 -13.05360 -12.98713 -12.94068 -12.75598 -12.70345 -12.40292 -12.30557 -12.11455 -12.03813 -11.96324 -11.83102 -11.59091 -11.51224 -11.44150 -11.31213 -10.42093 -10.33386 -10.00679 -9.72778 -9.25851 -8.46422 -5.95047 1.37093 1.42622 1.45077 1.56654 1.76662 2.06236 2.29948 2.85467 2.95186 3.21152 3.26183 3.45950 3.53481 3.66375 3.72594 3.81723 3.89018 4.07381 4.12769 4.28757 4.31416 4.33219 4.37365 4.40100 4.46236 4.54171 4.56926 4.65119 4.71737 4.72164 4.73035 4.76717 4.81563 4.87339 4.92720 4.95045 5.05763 5.15289 5.16944 5.28075 5.33508 5.41793 5.43718 5.84519 5.92369 6.15421 6.42522 6.46856 6.61133 7.04202 7.13541 7.57293 8.12903 8.71153 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042889 B = 0.001394 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.689743 B =20085.421273 C =20332.736170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.691 5.691 14 C 0.065 3.935 15 C -0.099 4.099 16 C -0.086 4.086 17 H 0.090 0.910 18 C -0.124 4.124 19 C 0.090 3.910 20 N -0.614 5.614 21 C 0.505 3.495 22 O -0.586 6.586 23 C 0.068 3.932 24 H 0.129 0.871 25 C -0.139 4.139 26 C -0.144 4.144 27 C 0.035 3.965 28 O -0.389 6.389 29 C 0.106 3.894 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.344 0.656 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.049 0.951 49 H 0.056 0.944 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 -30.504 9.785 32.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.066 4.066 13 N -0.323 5.323 14 C -0.064 4.064 15 C -0.137 4.137 16 C -0.106 4.106 17 H 0.109 0.891 18 C -0.162 4.162 19 C -0.031 4.031 20 N -0.348 5.348 21 C 0.294 3.706 22 O -0.466 6.466 23 C 0.007 3.993 24 H 0.147 0.853 25 C -0.177 4.177 26 C -0.181 4.181 27 C -0.041 4.041 28 O -0.307 6.307 29 C -0.017 4.017 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.162 0.838 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.145 0.855 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.524 -30.696 8.525 32.333 hybrid contribution 0.111 1.056 0.540 1.191 sum -5.413 -29.640 9.065 31.465 Atomic orbital electron populations 1.69670 1.06772 1.29231 1.50375 1.26010 0.96534 1.02319 0.96250 0.84886 0.78013 0.77176 0.78347 1.19910 1.19658 1.19488 1.19705 0.92695 0.84134 1.49921 0.90451 1.41939 1.09349 1.04702 1.65066 1.20990 0.88285 0.86322 0.82095 1.90492 1.16013 1.88018 1.56678 1.21516 0.93968 0.87930 1.03138 1.60050 1.19426 1.01376 1.51476 1.22013 0.95844 0.86889 1.01631 1.21367 0.97704 0.91929 1.02733 1.22214 0.96434 0.92131 0.99794 0.89141 1.22791 1.02643 0.93781 0.96941 1.22481 0.89798 0.94716 0.96095 1.48587 1.32600 1.04277 1.49376 1.21451 0.85062 0.83002 0.81091 1.90694 1.33112 1.81412 1.41406 1.22814 0.98028 0.82207 0.96201 0.85324 1.23183 1.04905 0.99153 0.90468 1.23293 1.03137 0.93231 0.98442 1.23705 0.98301 0.97290 0.84811 1.88495 1.83795 1.24343 1.34115 1.22287 0.95354 0.85780 0.98277 0.91289 0.76904 0.91225 0.87953 0.83787 0.93132 0.90670 0.92153 0.91397 0.89781 0.87737 0.88863 0.89125 0.91077 0.85532 0.88031 0.87796 0.87700 0.93293 0.92587 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 2 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 3 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.18 5.29 -306.98 -1.62 -30.80 16 10 C 0.44 20.53 7.82 87.66 0.69 21.22 16 11 O -0.63 -34.76 15.78 -3.07 -0.05 -34.81 16 12 C 0.07 2.19 6.17 85.56 0.53 2.71 16 13 N -0.69 -20.56 6.13 -517.93 -3.17 -23.73 16 14 C 0.06 1.25 5.53 86.30 0.48 1.73 16 15 C -0.10 -1.69 4.99 30.59 0.15 -1.54 16 16 C -0.09 -1.13 3.07 -9.40 -0.03 -1.15 16 17 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 18 C -0.12 -0.95 5.59 31.78 0.18 -0.78 16 19 C 0.09 0.65 6.13 86.73 0.53 1.18 16 20 N -0.61 -9.97 3.33 -811.79 -2.70 -12.67 16 21 C 0.50 11.16 7.09 87.66 0.62 11.78 16 22 O -0.59 -19.64 16.78 15.75 0.26 -19.38 16 23 C 0.07 0.99 3.37 30.32 0.10 1.10 16 24 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 25 C -0.14 -0.97 5.24 31.86 0.17 -0.81 16 26 C -0.14 -0.78 7.16 32.05 0.23 -0.55 16 27 C 0.03 0.44 7.78 72.65 0.56 1.00 16 28 O -0.39 -8.02 10.56 -130.19 -1.38 -9.40 16 29 C 0.11 1.90 6.38 86.86 0.55 2.45 16 30 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 32 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 34 H 0.34 10.74 8.43 -89.70 -0.76 9.99 16 35 H 0.05 0.78 7.51 -2.39 -0.02 0.76 16 36 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.15 8.11 -2.38 -0.02 1.13 16 39 H 0.08 0.64 8.01 -2.39 -0.02 0.62 16 40 H 0.10 0.50 8.13 -2.39 -0.02 0.48 16 41 H 0.09 0.31 6.53 -2.39 -0.02 0.29 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.07 0.68 7.84 -2.39 -0.02 0.66 16 44 H 0.13 0.05 7.38 -2.39 -0.02 0.04 16 45 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.06 1.26 8.04 -2.39 -0.02 1.24 16 50 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16 Total: -1.00 -81.37 404.22 -0.84 -82.21 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.54 Total: 32.63 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.04 Total: 20.01 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -7.21 Total: -116.02 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -1.16 Total: -63.59 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -81.37 -0.84 -82.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717071011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.410 kcal (2) G-P(sol) polarization free energy of solvation -81.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds