Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 120.00294 * 2 1 4 4 H 1.48496 * 109.46869 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46908 * 120.00373 * 3 2 1 6 6 H 1.48493 * 109.47216 * 240.00235 * 3 2 1 7 7 C 1.38811 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00170 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00266 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00516 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47312 * 174.83145 * 10 9 7 12 12 N 1.46499 * 109.53923 * 58.55915 * 11 10 9 13 13 C 1.34776 * 120.00086 * 62.02646 * 12 11 10 14 14 O 1.21274 * 119.99984 * 355.34308 * 13 12 11 15 15 C 1.50700 * 119.99996 * 175.34521 * 13 12 11 16 16 C 1.53005 * 109.47186 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.60118 * 305.00211 * 16 15 13 18 18 C 1.53346 * 109.60351 * 184.67575 * 16 15 13 19 19 C 1.53008 * 108.46059 * 172.88917 * 18 16 15 20 20 C 1.50173 * 110.00893 * 48.63279 * 19 18 16 21 21 O 1.21277 * 118.24871 * 162.50598 * 20 19 18 22 22 N 1.33352 * 123.50804 * 342.53476 * 20 19 18 23 23 C 1.45755 * 124.10488 * 2.23507 * 22 20 19 24 24 C 1.53180 * 109.54610 * 298.29461 * 11 10 9 25 25 C 1.53088 * 109.16067 * 183.15364 * 24 11 10 26 26 O 1.42903 * 109.41925 * 57.60465 * 25 24 11 27 27 C 1.42907 * 114.09751 * 298.84289 * 26 25 24 28 28 C 1.53087 * 109.41583 * 61.15600 * 27 26 25 29 29 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99327 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46837 * 294.84241 * 10 9 7 32 32 H 1.09004 * 109.46728 * 54.83242 * 10 9 7 33 33 H 0.97002 * 120.00404 * 242.02296 * 12 11 10 34 34 H 1.08997 * 109.47270 * 299.99638 * 15 13 12 35 35 H 1.09002 * 109.47320 * 60.00262 * 15 13 12 36 36 H 1.09008 * 109.67242 * 292.44771 * 18 16 15 37 37 H 1.08997 * 109.67328 * 52.98023 * 18 16 15 38 38 H 1.08997 * 109.25091 * 288.52216 * 19 18 16 39 39 H 1.09005 * 109.36604 * 168.81170 * 19 18 16 40 40 H 0.96999 * 117.95169 * 182.22627 * 22 20 19 41 41 H 1.08994 * 109.30314 * 220.59218 * 23 22 20 42 42 H 1.09006 * 109.13015 * 101.11748 * 23 22 20 43 43 H 1.09000 * 109.51685 * 303.05226 * 24 11 10 44 44 H 1.09001 * 109.52066 * 63.24425 * 24 11 10 45 45 H 1.09007 * 109.47897 * 297.61850 * 25 24 11 46 46 H 1.08996 * 109.48656 * 177.59853 * 25 24 11 47 47 H 1.09000 * 109.47688 * 301.17248 * 27 26 25 48 48 H 1.08998 * 109.48863 * 181.14784 * 27 26 25 49 49 H 1.08992 * 109.52523 * 182.48712 * 28 27 26 50 50 H 1.09005 * 109.52014 * 62.29445 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0688 -4.8168 0.1294 12 7 0.1136 -4.7728 -0.9805 13 6 0.5485 -4.9027 -2.2495 14 8 1.7374 -4.9711 -2.4790 15 6 -0.4424 -4.9628 -3.3833 16 6 0.3075 -5.1098 -4.7088 17 1 1.0332 -4.3028 -4.8098 18 6 -0.6893 -5.0540 -5.8728 19 6 0.0983 -5.0235 -7.1842 20 6 1.1443 -6.1011 -7.1805 21 8 1.6337 -6.4296 -8.2404 22 7 1.5634 -6.7165 -6.0742 23 6 1.0302 -6.4569 -4.7427 24 6 0.3173 -4.7030 1.4594 25 6 -0.6122 -5.9092 1.6161 26 8 0.1553 -7.1126 1.5468 27 6 0.8422 -7.2960 0.3071 28 6 1.8302 -6.1456 0.0978 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6134 -3.7556 -0.9331 32 1 2.7522 -3.6755 0.8396 33 1 -0.8320 -4.6503 -0.8021 34 1 -1.1037 -5.8178 -3.2429 35 1 -1.0320 -4.0462 -3.3996 36 1 -1.3276 -5.9374 -5.8519 37 1 -1.3016 -4.1562 -5.7889 38 1 0.5800 -4.0517 -7.2916 39 1 -0.5837 -5.1838 -8.0193 40 1 2.2670 -7.3785 -6.1610 41 1 1.8486 -6.4450 -4.0230 42 1 0.3293 -7.2486 -4.4780 43 1 1.0328 -4.6852 2.2815 44 1 -0.2715 -3.7857 1.4677 45 1 -1.3528 -5.9038 0.8163 46 1 -1.1180 -5.8556 2.5802 47 1 0.1206 -7.3088 -0.5097 48 1 1.3842 -8.2414 0.3281 49 1 2.3232 -6.2599 -0.8675 50 1 2.5761 -6.1569 0.8925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717264482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -117.831086 kcal Electronic energy + Delta-G solvation = -31575.852530 eV Core-core repulsion = 27409.666300 eV Total energy + Delta-G solvation = -4166.186230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81021 -40.21013 -38.59903 -36.82634 -35.70533 -33.72828 -33.54228 -32.08606 -31.16481 -31.03722 -30.41169 -27.08438 -26.38527 -24.62069 -23.80553 -23.44092 -22.35702 -21.52856 -20.64173 -19.22677 -19.06166 -17.31305 -17.30730 -17.17179 -16.23828 -16.03611 -15.93166 -15.70614 -15.42394 -15.14534 -14.62501 -14.60063 -14.36848 -14.08824 -13.73341 -13.60557 -13.40517 -13.26580 -13.04623 -12.81023 -12.54595 -12.40118 -12.22840 -11.80790 -11.68647 -11.64466 -11.37274 -11.26347 -11.09792 -11.01652 -10.95483 -10.82748 -10.55305 -10.36564 -10.13204 -9.86405 -9.74912 -9.59229 -9.35562 -9.13096 -8.82848 -8.62560 -6.90393 -5.79928 -3.06047 2.55319 2.87403 3.20259 3.32529 3.42600 3.46766 3.48206 3.90212 4.36499 4.45900 4.50611 4.55938 4.59425 4.75475 4.94384 4.96101 5.06341 5.08162 5.11004 5.20274 5.22629 5.32340 5.33576 5.38928 5.48592 5.55415 5.60382 5.61061 5.65055 5.69107 5.74011 5.88975 5.90642 6.02733 6.06394 6.12906 6.20184 6.25282 6.43527 6.47293 6.65144 6.82092 7.03039 7.20655 7.23038 7.68612 7.76328 8.10778 8.39910 8.48677 9.51595 10.08645 10.44347 11.43195 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.004019 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.936208 B = 6964.901792 C = 9454.222958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.232 4.232 8 H 0.067 0.933 9 N -0.725 5.725 10 C 0.143 3.857 11 C 0.175 3.825 12 N -0.713 5.713 13 C 0.520 3.480 14 O -0.531 6.531 15 C -0.135 4.135 16 C -0.087 4.087 17 H 0.093 0.907 18 C -0.120 4.120 19 C -0.135 4.135 20 C 0.519 3.481 21 O -0.568 6.568 22 N -0.716 5.716 23 C 0.109 3.891 24 C -0.154 4.154 25 C 0.061 3.939 26 O -0.386 6.386 27 C 0.067 3.933 28 C -0.163 4.163 29 H 0.254 0.746 30 H 0.381 0.619 31 H 0.045 0.955 32 H 0.023 0.977 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.398 0.602 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -15.920 -4.203 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.364 4.364 8 H 0.085 0.915 9 N -0.370 5.370 10 C 0.015 3.985 11 C 0.089 3.911 12 N -0.364 5.364 13 C 0.306 3.694 14 O -0.408 6.408 15 C -0.176 4.176 16 C -0.107 4.107 17 H 0.111 0.889 18 C -0.158 4.158 19 C -0.175 4.175 20 C 0.306 3.694 21 O -0.448 6.448 22 N -0.367 5.367 23 C -0.015 4.015 24 C -0.192 4.192 25 C -0.015 4.015 26 O -0.305 6.305 27 C -0.010 4.010 28 C -0.202 4.202 29 H 0.064 0.936 30 H 0.215 0.785 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.230 0.770 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.233 0.767 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.693 -15.985 -4.720 17.315 hybrid contribution -0.089 1.214 0.060 1.219 sum -4.782 -14.770 -4.661 16.210 Atomic orbital electron populations 1.69622 1.05019 1.25601 1.58405 1.24656 0.95503 0.97470 1.03290 0.86292 0.78556 0.83651 0.77869 1.21736 1.21344 1.21374 1.19183 0.91001 0.84197 1.41986 0.91452 1.42188 1.05522 0.99697 1.89548 1.21090 0.93042 0.84919 0.99478 1.20578 0.89828 0.95487 0.85214 1.45990 1.10689 1.74018 1.05749 1.20386 0.89706 0.75697 0.83602 1.90613 1.17005 1.49355 1.83860 1.21686 0.98374 1.04848 0.92660 1.21185 0.97616 0.98483 0.93373 0.88866 1.21746 0.97723 1.03467 0.92859 1.21615 0.97245 0.98703 0.99905 1.20215 0.83224 0.82740 0.83199 1.90744 1.58453 1.65323 1.30249 1.45475 1.40926 1.42789 1.07462 1.21674 0.99912 0.96292 0.83592 1.22421 1.00397 0.99356 0.97035 1.22610 0.92815 0.84244 1.01865 1.87903 1.65053 1.40974 1.36561 1.22496 0.94156 0.98193 0.86139 1.22536 0.98971 0.94182 1.04547 0.93633 0.78534 0.93713 0.95890 0.76961 0.88976 0.87918 0.91138 0.89987 0.88017 0.88183 0.76714 0.88243 0.92318 0.89603 0.89049 0.93542 0.88880 0.93594 0.89392 0.88768 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.10 13.06 55.49 0.72 -26.38 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.38 9.99 -15.06 -0.15 -6.53 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.28 5.15 -59.91 -0.31 -17.59 16 10 C 0.14 2.82 4.98 -4.04 -0.02 2.80 16 11 C 0.17 2.54 0.32 -131.64 -0.04 2.50 16 12 N -0.71 -9.08 3.75 -47.44 -0.18 -9.26 16 13 C 0.52 6.76 6.99 -10.99 -0.08 6.68 16 14 O -0.53 -8.49 10.28 5.56 0.06 -8.43 16 15 C -0.14 -1.24 5.18 -27.88 -0.14 -1.39 16 16 C -0.09 -0.84 1.89 -90.48 -0.17 -1.01 16 17 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 18 C -0.12 -0.93 5.33 -26.55 -0.14 -1.08 16 19 C -0.13 -1.26 6.03 -28.13 -0.17 -1.43 16 20 C 0.52 6.41 7.72 -11.87 -0.09 6.32 16 21 O -0.57 -9.28 17.78 5.56 0.10 -9.18 16 22 N -0.72 -7.52 5.45 -61.39 -0.33 -7.85 16 23 C 0.11 1.03 6.11 -4.49 -0.03 1.00 16 24 C -0.15 -2.11 4.76 -26.59 -0.13 -2.23 16 25 C 0.06 0.69 6.67 37.20 0.25 0.93 16 26 O -0.39 -4.82 10.77 -35.23 -0.38 -5.19 16 27 C 0.07 0.74 6.68 37.20 0.25 0.99 16 28 C -0.16 -2.11 4.74 -26.59 -0.13 -2.24 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.38 9.22 6.54 -40.82 -0.27 8.95 16 31 H 0.05 0.99 6.21 -51.93 -0.32 0.66 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.40 4.31 7.61 -40.82 -0.31 4.00 16 34 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.47 8.13 -51.92 -0.42 0.05 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 3.89 8.80 -40.82 -0.36 3.53 16 41 H 0.10 1.09 6.19 -51.93 -0.32 0.77 16 42 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.41 7.18 -51.93 -0.37 1.03 16 45 H 0.05 0.45 7.15 -51.93 -0.37 0.08 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.47 7.75 -51.93 -0.40 0.07 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.09 1.31 6.13 -51.93 -0.32 0.99 16 50 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -34.17 385.25 -8.50 -42.67 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -8.07 Total: 13.35 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.89 Total: 4.83 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.10 Total: -61.08 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.22 Total: -22.81 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.17 -8.50 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717264482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.164 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds