Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 120.00294 * 2 1 4 4 H 1.48496 * 109.46869 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46908 * 120.00373 * 3 2 1 6 6 H 1.48493 * 109.47216 * 240.00235 * 3 2 1 7 7 C 1.38811 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00170 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00266 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00516 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47312 * 174.83145 * 10 9 7 12 12 N 1.46499 * 109.53923 * 58.55915 * 11 10 9 13 13 C 1.34776 * 120.00086 * 62.02646 * 12 11 10 14 14 O 1.21274 * 119.99984 * 355.34308 * 13 12 11 15 15 C 1.50700 * 119.99996 * 175.34521 * 13 12 11 16 16 C 1.53005 * 109.47186 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.60118 * 305.00211 * 16 15 13 18 18 C 1.53346 * 109.60351 * 184.67575 * 16 15 13 19 19 C 1.53008 * 108.46059 * 172.88917 * 18 16 15 20 20 C 1.50173 * 110.00893 * 48.63279 * 19 18 16 21 21 O 1.21277 * 118.24871 * 162.50598 * 20 19 18 22 22 N 1.33352 * 123.50804 * 342.53476 * 20 19 18 23 23 C 1.45755 * 124.10488 * 2.23507 * 22 20 19 24 24 C 1.53180 * 109.54610 * 298.29461 * 11 10 9 25 25 C 1.53088 * 109.16067 * 183.15364 * 24 11 10 26 26 O 1.42903 * 109.41925 * 57.60465 * 25 24 11 27 27 C 1.42907 * 114.09751 * 298.84289 * 26 25 24 28 28 C 1.53087 * 109.41583 * 61.15600 * 27 26 25 29 29 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99327 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46837 * 294.84241 * 10 9 7 32 32 H 1.09004 * 109.46728 * 54.83242 * 10 9 7 33 33 H 0.97002 * 120.00404 * 242.02296 * 12 11 10 34 34 H 1.08997 * 109.47270 * 299.99638 * 15 13 12 35 35 H 1.09002 * 109.47320 * 60.00262 * 15 13 12 36 36 H 1.09008 * 109.67242 * 292.44771 * 18 16 15 37 37 H 1.08997 * 109.67328 * 52.98023 * 18 16 15 38 38 H 1.08997 * 109.25091 * 288.52216 * 19 18 16 39 39 H 1.09005 * 109.36604 * 168.81170 * 19 18 16 40 40 H 0.96999 * 117.95169 * 182.22627 * 22 20 19 41 41 H 1.08994 * 109.30314 * 220.59218 * 23 22 20 42 42 H 1.09006 * 109.13015 * 101.11748 * 23 22 20 43 43 H 1.09000 * 109.51685 * 303.05226 * 24 11 10 44 44 H 1.09001 * 109.52066 * 63.24425 * 24 11 10 45 45 H 1.09007 * 109.47897 * 297.61850 * 25 24 11 46 46 H 1.08996 * 109.48656 * 177.59853 * 25 24 11 47 47 H 1.09000 * 109.47688 * 301.17248 * 27 26 25 48 48 H 1.08998 * 109.48863 * 181.14784 * 27 26 25 49 49 H 1.08992 * 109.52523 * 182.48712 * 28 27 26 50 50 H 1.09005 * 109.52014 * 62.29445 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0688 -4.8168 0.1294 12 7 0.1136 -4.7728 -0.9805 13 6 0.5485 -4.9027 -2.2495 14 8 1.7374 -4.9711 -2.4790 15 6 -0.4424 -4.9628 -3.3833 16 6 0.3075 -5.1098 -4.7088 17 1 1.0332 -4.3028 -4.8098 18 6 -0.6893 -5.0540 -5.8728 19 6 0.0983 -5.0235 -7.1842 20 6 1.1443 -6.1011 -7.1805 21 8 1.6337 -6.4296 -8.2404 22 7 1.5634 -6.7165 -6.0742 23 6 1.0302 -6.4569 -4.7427 24 6 0.3173 -4.7030 1.4594 25 6 -0.6122 -5.9092 1.6161 26 8 0.1553 -7.1126 1.5468 27 6 0.8422 -7.2960 0.3071 28 6 1.8302 -6.1456 0.0978 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6134 -3.7556 -0.9331 32 1 2.7522 -3.6755 0.8396 33 1 -0.8320 -4.6503 -0.8021 34 1 -1.1037 -5.8178 -3.2429 35 1 -1.0320 -4.0462 -3.3996 36 1 -1.3276 -5.9374 -5.8519 37 1 -1.3016 -4.1562 -5.7889 38 1 0.5800 -4.0517 -7.2916 39 1 -0.5837 -5.1838 -8.0193 40 1 2.2670 -7.3785 -6.1610 41 1 1.8486 -6.4450 -4.0230 42 1 0.3293 -7.2486 -4.4780 43 1 1.0328 -4.6852 2.2815 44 1 -0.2715 -3.7857 1.4677 45 1 -1.3528 -5.9038 0.8163 46 1 -1.1180 -5.8556 2.5802 47 1 0.1206 -7.3088 -0.5097 48 1 1.3842 -8.2414 0.3281 49 1 2.3232 -6.2599 -0.8675 50 1 2.5761 -6.1569 0.8925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717264482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -144.069524 kcal Electronic energy + Delta-G solvation = -31576.990314 eV Core-core repulsion = 27409.666300 eV Total energy + Delta-G solvation = -4167.324014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83371 -41.17479 -39.59968 -37.80646 -37.02756 -35.41076 -34.40018 -33.29049 -32.42756 -32.01561 -31.80990 -28.27380 -27.63106 -25.49013 -25.27253 -24.58132 -23.32990 -22.90433 -21.60814 -20.25841 -19.96632 -19.25617 -18.27802 -18.13467 -17.19001 -17.03031 -16.96896 -16.81092 -16.51851 -16.25331 -16.11490 -15.58735 -15.49783 -15.24886 -15.02621 -14.79883 -14.56412 -14.33887 -14.22253 -13.83214 -13.77489 -13.62451 -13.20039 -13.11722 -12.97376 -12.79891 -12.75199 -12.46453 -12.28391 -12.17271 -12.13884 -11.95117 -11.88524 -11.74357 -11.57385 -11.28966 -11.00067 -10.81148 -10.58752 -10.33322 -10.04165 -9.78115 -8.92733 -7.95649 -5.20682 1.45309 1.46447 1.52633 1.60343 1.86231 2.31412 2.37495 2.54995 3.01555 3.37444 3.57977 3.59587 3.71792 3.76948 3.83910 3.85394 3.94148 4.04781 4.13605 4.29466 4.33265 4.41293 4.47432 4.50779 4.56671 4.68888 4.68972 4.79206 4.81214 4.84975 4.87936 4.90620 4.91186 4.94867 5.00090 5.13227 5.17346 5.20698 5.23404 5.27056 5.39232 5.47347 5.75365 5.79826 6.27605 6.30453 6.34895 6.76098 7.18497 7.35720 7.48804 8.09878 8.39200 9.26746 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.004019 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.936208 B = 6964.901792 C = 9454.222958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.963 3.037 4 H -0.290 1.290 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.060 0.940 9 N -0.726 5.726 10 C 0.145 3.855 11 C 0.184 3.816 12 N -0.708 5.708 13 C 0.510 3.490 14 O -0.566 6.566 15 C -0.125 4.125 16 C -0.086 4.086 17 H 0.057 0.943 18 C -0.110 4.110 19 C -0.133 4.133 20 C 0.512 3.488 21 O -0.616 6.616 22 N -0.711 5.711 23 C 0.112 3.888 24 C -0.148 4.148 25 C 0.067 3.933 26 O -0.396 6.396 27 C 0.072 3.928 28 C -0.156 4.156 29 H 0.252 0.748 30 H 0.379 0.621 31 H 0.022 0.978 32 H 0.010 0.990 33 H 0.408 0.592 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.399 0.601 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.084 0.916 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -17.092 -4.009 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.792 3.208 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.078 0.922 9 N -0.370 5.370 10 C 0.017 3.983 11 C 0.097 3.903 12 N -0.361 5.361 13 C 0.299 3.701 14 O -0.445 6.445 15 C -0.165 4.165 16 C -0.106 4.106 17 H 0.076 0.924 18 C -0.147 4.147 19 C -0.173 4.173 20 C 0.300 3.700 21 O -0.500 6.500 22 N -0.359 5.359 23 C -0.011 4.011 24 C -0.186 4.186 25 C -0.009 4.009 26 O -0.315 6.315 27 C -0.004 4.004 28 C -0.195 4.195 29 H 0.061 0.939 30 H 0.212 0.788 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.244 0.756 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.234 0.766 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.123 0.877 49 H 0.102 0.898 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.833 -17.178 -4.488 19.024 hybrid contribution 0.685 1.581 0.032 1.723 sum -6.147 -15.597 -4.456 17.347 Atomic orbital electron populations 1.69735 1.05940 1.25968 1.59317 1.25311 0.96376 1.00151 1.03703 0.85384 0.77448 0.80142 0.77799 1.21583 1.20785 1.21296 1.19460 0.91019 0.85835 1.41489 0.92230 1.42218 1.05452 1.00143 1.89180 1.21114 0.94044 0.85560 0.97551 1.20312 0.89445 0.94009 0.86562 1.45935 1.10923 1.73839 1.05359 1.21167 0.90022 0.74645 0.84297 1.90616 1.18843 1.50710 1.84334 1.21700 0.97553 1.06943 0.90265 1.21129 0.97530 0.97244 0.94657 0.92401 1.21718 0.97101 1.05284 0.90604 1.21654 0.96802 0.97260 1.01581 1.20789 0.83439 0.82987 0.82737 1.90716 1.60347 1.66976 1.31965 1.45535 1.40554 1.42175 1.07677 1.21715 0.99885 0.97241 0.82273 1.22326 1.00282 1.00134 0.95857 1.22653 0.92228 0.82388 1.03660 1.87905 1.65232 1.41088 1.37267 1.22549 0.93954 0.97670 0.86253 1.22454 0.99241 0.94132 1.03702 0.93947 0.78777 0.96037 0.97160 0.75568 0.84852 0.87278 0.88892 0.88503 0.88306 0.86817 0.76590 0.90026 0.89387 0.91005 0.90879 0.91266 0.87404 0.91963 0.87680 0.89770 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.57 13.06 21.65 0.28 -55.28 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 3 Si 0.96 45.93 29.55 68.60 2.03 47.96 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 9 N -0.73 -35.34 5.15 -343.46 -1.77 -37.11 16 10 C 0.15 5.91 4.98 86.38 0.43 6.34 16 11 C 0.18 5.28 0.32 3.72 0.00 5.28 16 12 N -0.71 -17.02 3.75 -422.39 -1.58 -18.60 16 13 C 0.51 12.62 6.99 87.66 0.61 13.24 16 14 O -0.57 -18.24 10.28 -3.01 -0.03 -18.27 16 15 C -0.12 -1.92 5.18 29.85 0.15 -1.77 16 16 C -0.09 -1.50 1.89 -10.70 -0.02 -1.52 16 17 H 0.06 1.43 7.94 -2.39 -0.02 1.41 16 18 C -0.11 -1.38 5.33 30.71 0.16 -1.21 16 19 C -0.13 -2.30 6.03 29.69 0.18 -2.12 16 20 C 0.51 12.44 7.72 87.71 0.68 13.12 16 21 O -0.62 -20.48 17.78 -3.02 -0.05 -20.54 16 22 N -0.71 -14.46 5.45 -467.33 -2.55 -17.01 16 23 C 0.11 1.92 6.11 86.49 0.53 2.45 16 24 C -0.15 -3.94 4.76 30.68 0.15 -3.80 16 25 C 0.07 1.33 6.67 72.01 0.48 1.81 16 26 O -0.40 -8.76 10.77 -148.98 -1.60 -10.36 16 27 C 0.07 1.41 6.68 72.01 0.48 1.89 16 28 C -0.16 -3.93 4.74 30.68 0.15 -3.79 16 29 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.38 18.55 6.54 -92.70 -0.61 17.95 16 31 H 0.02 1.00 6.21 -2.39 -0.01 0.98 16 32 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.41 7.86 7.61 -92.71 -0.71 7.16 16 34 H 0.13 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 0.82 8.13 -2.38 -0.02 0.80 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.40 7.77 8.80 -92.71 -0.82 6.95 16 41 H 0.08 1.76 6.19 -2.39 -0.01 1.74 16 42 H 0.09 1.04 8.09 -2.38 -0.02 1.02 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.23 7.18 -2.39 -0.02 2.22 16 45 H 0.07 1.08 7.15 -2.38 -0.02 1.06 16 46 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.06 1.03 7.75 -2.39 -0.02 1.01 16 48 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 2.33 6.13 -2.39 -0.01 2.31 16 50 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -76.08 385.25 -1.14 -77.23 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -1.15 Total: 38.02 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 5.29 Total: 13.97 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.62 Total: -128.01 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.69 Total: -49.17 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.08 -1.14 -77.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717264482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.843 kcal (2) G-P(sol) polarization free energy of solvation -76.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds