Wall clock time and date at job start Sat Apr 11 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.45014 * 2 1 4 4 C 1.46896 * 110.99695 * 60.03306 * 3 2 1 5 5 C 1.50709 * 109.47010 * 180.02562 * 4 3 2 6 6 O 1.21291 * 119.99622 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99846 * 180.02562 * 5 4 3 8 8 C 1.37097 * 119.99637 * 180.02562 * 7 5 4 9 9 H 1.07999 * 120.00332 * 0.02562 * 8 7 5 10 10 C 1.38955 * 120.00109 * 179.97438 * 8 7 5 11 11 N 1.31407 * 120.00311 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99824 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46947 * 89.99594 * 12 10 8 14 14 H 1.48495 * 109.47200 * 209.99572 * 12 10 8 15 15 H 1.48502 * 109.47098 * 330.00155 * 12 10 8 16 16 C 1.53046 * 109.45954 * 240.03693 * 2 1 3 17 17 C 1.53195 * 109.30793 * 301.34110 * 16 2 1 18 18 N 1.46923 * 108.77575 * 305.36150 * 17 16 2 19 19 C 1.34772 * 120.63343 * 233.58368 * 18 17 16 20 20 O 1.21280 * 120.00243 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99949 * 0.03442 * 19 18 17 22 22 H 1.08996 * 110.33624 * 55.69385 * 21 19 18 23 23 C 1.54486 * 110.37008 * 293.44417 * 21 19 18 24 24 C 1.54515 * 104.06414 * 217.19195 * 23 21 19 25 25 C 1.54480 * 104.05923 * 359.97438 * 24 23 21 26 26 O 1.44425 * 110.37354 * 177.94630 * 21 19 18 27 27 C 1.46931 * 118.73730 * 53.61542 * 18 17 16 28 28 C 1.53043 * 109.46482 * 119.96743 * 2 1 3 29 29 H 1.08998 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47167 * 299.96516 * 1 2 3 31 31 H 1.08998 * 109.47424 * 59.96492 * 1 2 3 32 32 H 1.00897 * 111.00013 * 183.99302 * 3 2 1 33 33 H 1.08996 * 109.47407 * 300.00317 * 4 3 2 34 34 H 1.08998 * 109.47407 * 60.00747 * 4 3 2 35 35 H 0.96994 * 120.00217 * 0.02562 * 7 5 4 36 36 H 0.97001 * 120.00037 * 180.02562 * 11 10 8 37 37 H 1.08990 * 109.49711 * 61.29178 * 16 2 1 38 38 H 1.08999 * 109.49785 * 181.39425 * 16 2 1 39 39 H 1.08996 * 109.58476 * 65.15647 * 17 16 2 40 40 H 1.09006 * 109.58092 * 185.57719 * 17 16 2 41 41 H 1.08999 * 110.50608 * 335.83565 * 23 21 19 42 42 H 1.09001 * 110.51113 * 98.40817 * 23 21 19 43 43 H 1.08995 * 110.50868 * 118.64330 * 24 23 21 44 44 H 1.08993 * 110.50738 * 241.35859 * 24 23 21 45 45 H 1.09000 * 110.36940 * 142.81412 * 25 24 23 46 46 H 1.08997 * 110.37464 * 265.03467 * 25 24 23 47 47 H 1.09001 * 109.58511 * 186.59744 * 27 18 17 48 48 H 1.08996 * 109.70113 * 66.24209 * 27 18 17 49 49 H 1.09000 * 109.49738 * 178.60948 * 28 2 1 50 50 H 1.09003 * 109.49316 * 298.70313 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3852 0.0000 4 6 1.5485 2.1096 1.1881 5 6 2.0685 3.5237 1.1530 6 8 2.7625 3.8918 0.2288 7 7 1.7624 4.3791 2.1484 8 6 2.2351 5.6656 2.1162 9 1 2.8524 5.9937 1.2929 10 6 1.9191 6.5478 3.1422 11 7 2.3726 7.7808 3.1116 12 14 0.8509 5.9807 4.5658 13 1 1.7125 5.4278 5.6415 14 1 0.0775 7.1330 5.0941 15 1 -0.0864 4.9301 4.0934 16 6 2.0398 -0.7207 -1.2502 17 6 1.4995 -2.1542 -1.2643 18 7 1.8626 -2.8088 -0.0001 19 6 2.5157 -3.9878 -0.0001 20 8 2.8094 -4.5183 1.0502 21 6 2.8811 -4.6467 -1.3052 22 1 3.4698 -3.9669 -1.9210 23 6 1.6075 -5.0891 -2.0593 24 6 2.0056 -6.4311 -2.7137 25 6 3.4729 -6.6403 -2.2780 26 8 3.6131 -5.8682 -1.0641 27 6 1.4997 -2.1541 1.2642 28 6 2.0399 -0.7208 1.2501 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5144 -0.8896 32 1 3.0256 1.4132 -0.0656 33 1 0.4586 2.1238 1.1970 34 1 1.9127 1.6105 2.0860 35 1 1.2078 4.0846 2.8876 36 1 2.1523 8.3965 3.8280 37 1 1.6957 -0.1934 -2.1398 38 1 3.1295 -0.7428 -1.2384 39 1 0.4146 -2.1347 -1.3674 40 1 1.9382 -2.7017 -2.0985 41 1 0.7820 -5.2341 -1.3624 42 1 1.3397 -4.3556 -2.8198 43 1 1.3769 -7.2394 -2.3403 44 1 1.9361 -6.3620 -3.7992 45 1 3.6634 -7.6953 -2.0809 46 1 4.1530 -6.2695 -3.0448 47 1 1.9383 -2.7018 2.0984 48 1 0.4150 -2.1348 1.3698 49 1 3.1297 -0.7427 1.2382 50 1 1.6959 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717294716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:13 Heat of formation + Delta-G solvation = -98.997537 kcal Electronic energy + Delta-G solvation = -30379.656123 eV Core-core repulsion = 26214.286576 eV Total energy + Delta-G solvation = -4165.369546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13887 -39.73561 -38.57813 -37.89365 -35.49861 -33.97327 -32.76269 -31.80635 -31.73070 -31.51920 -29.75151 -27.92290 -27.09547 -24.97085 -24.35404 -23.28417 -22.89995 -21.91021 -20.31957 -19.38868 -18.65092 -18.38576 -17.80446 -16.92486 -16.72111 -16.26052 -15.80698 -15.52500 -15.30799 -15.02524 -14.90093 -14.64870 -14.60244 -14.31889 -14.17892 -13.76918 -13.47514 -13.37002 -12.94560 -12.80941 -12.50079 -12.42608 -12.31104 -12.21740 -12.12972 -11.95107 -11.83599 -11.71390 -11.51627 -11.41298 -11.29093 -11.19480 -10.81226 -10.62985 -10.59245 -10.45305 -9.98576 -9.86598 -9.58164 -8.99117 -8.59928 -8.20401 -8.13087 -6.31963 -3.83407 2.24180 2.42209 3.01512 3.05834 3.14287 3.49368 3.72908 3.85738 3.98127 4.08714 4.09609 4.24989 4.40217 4.45417 4.57061 4.62829 4.71390 4.74774 4.78967 4.86314 4.93908 5.01163 5.03982 5.13164 5.17142 5.19672 5.28727 5.33883 5.38264 5.41993 5.47264 5.49988 5.54520 5.65915 5.69758 5.72888 5.83779 5.84952 5.94752 5.98441 6.14290 6.21219 6.29990 7.01352 7.09156 7.53795 7.57539 7.84585 8.13658 8.58833 8.94148 9.41565 9.81831 10.81139 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.002066 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.405196 B =13551.403853 C =13827.777219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.114 3.886 3 N -0.655 5.655 4 C 0.043 3.957 5 C 0.450 3.550 6 O -0.565 6.565 7 N -0.591 5.591 8 C -0.305 4.305 9 H 0.119 0.881 10 C 0.041 3.959 11 N -0.881 5.881 12 Si 0.880 3.120 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.269 1.269 16 C -0.122 4.122 17 C 0.103 3.897 18 N -0.607 5.607 19 C 0.521 3.479 20 O -0.522 6.522 21 C 0.058 3.942 22 H 0.096 0.904 23 C -0.146 4.146 24 C -0.154 4.154 25 C 0.040 3.960 26 O -0.345 6.345 27 C 0.117 3.883 28 C -0.168 4.168 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.351 0.649 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -28.329 -10.494 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.023 3.977 3 N -0.286 5.286 4 C -0.090 4.090 5 C 0.235 3.765 6 O -0.447 6.447 7 N -0.230 5.230 8 C -0.434 4.434 9 H 0.137 0.863 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.706 3.294 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.195 1.195 16 C -0.161 4.161 17 C -0.020 4.020 18 N -0.343 5.343 19 C 0.307 3.693 20 O -0.396 6.396 21 C -0.004 4.004 22 H 0.113 0.887 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.037 4.037 26 O -0.263 6.263 27 C -0.005 4.005 28 C -0.208 4.208 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.410 -27.957 -10.659 30.405 hybrid contribution -0.389 -0.413 1.735 1.826 sum -5.799 -28.370 -8.924 30.301 Atomic orbital electron populations 1.22019 0.93791 1.01418 1.03117 1.20908 0.95663 0.87883 0.93288 1.60283 1.17540 1.10840 1.39979 1.21801 1.01258 0.93812 0.92098 1.19732 0.85695 0.86658 0.84378 1.90564 1.40963 1.78009 1.35177 1.42204 1.47415 1.12010 1.21386 1.19428 1.29847 0.84566 1.09529 0.86297 1.25044 0.97880 0.95304 0.97968 1.69619 1.44620 1.04358 1.33508 0.86673 0.80779 0.78950 0.82995 1.19654 1.20159 1.19491 1.21929 1.01311 0.93921 0.98912 1.21988 1.00909 0.93625 0.85454 1.48041 1.57662 1.20750 1.07826 1.20183 0.77690 0.80775 0.90603 1.90726 1.52771 1.63078 1.33065 1.22861 0.93862 0.89425 0.94227 0.88693 1.23011 0.97430 0.97941 0.99977 1.22948 0.97163 0.97564 1.01472 1.23533 0.95585 0.97362 0.87175 1.89318 1.72553 1.28790 1.35634 1.21595 1.00040 0.92688 0.86221 1.22761 1.01773 0.95724 1.00511 0.92232 0.92240 0.91370 0.82940 0.89211 0.93512 0.79732 0.91612 0.89166 0.91280 0.90382 0.89626 0.90068 0.89217 0.90259 0.89919 0.88549 0.91777 0.89069 0.90917 0.91281 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.48 37.16 0.28 -1.06 16 2 C 0.11 1.17 0.71 -131.56 -0.09 1.07 16 3 N -0.66 -9.32 5.71 -101.17 -0.58 -9.90 16 4 C 0.04 0.68 5.38 -4.97 -0.03 0.65 16 5 C 0.45 10.02 7.82 -10.98 -0.09 9.93 16 6 O -0.57 -14.98 15.78 5.55 0.09 -14.89 16 7 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 8 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 9 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 10 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 11 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 12 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 15 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 16 C -0.12 -1.02 5.17 -26.61 -0.14 -1.15 16 17 C 0.10 0.66 5.29 -3.71 -0.02 0.64 16 18 N -0.61 -5.49 2.97 -172.77 -0.51 -6.01 16 19 C 0.52 5.92 7.00 -10.99 -0.08 5.84 16 20 O -0.52 -8.30 15.97 -13.65 -0.22 -8.52 16 21 C 0.06 0.49 2.75 -27.10 -0.07 0.42 16 22 H 0.10 0.64 7.50 -51.93 -0.39 0.25 16 23 C -0.15 -0.80 5.62 -25.16 -0.14 -0.94 16 24 C -0.15 -0.71 7.09 -25.16 -0.18 -0.89 16 25 C 0.04 0.25 7.63 37.93 0.29 0.54 16 26 O -0.35 -3.76 10.92 -54.44 -0.59 -4.36 16 27 C 0.12 1.12 5.96 -3.71 -0.02 1.09 16 28 C -0.17 -1.69 4.70 -26.61 -0.13 -1.82 16 29 H 0.06 0.44 4.98 -51.93 -0.26 0.18 16 30 H 0.06 0.57 6.40 -51.93 -0.33 0.24 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.35 5.36 8.42 -39.29 -0.33 5.03 16 33 H 0.09 1.28 6.30 -51.93 -0.33 0.95 16 34 H 0.05 0.65 6.27 -51.93 -0.33 0.33 16 35 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.41 6.69 -51.93 -0.35 0.06 16 40 H 0.09 0.38 4.53 -51.93 -0.24 0.15 16 41 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 42 H 0.09 0.28 6.93 -51.93 -0.36 -0.08 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 1.02 7.01 -51.93 -0.36 0.66 16 48 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.83 6.33 -51.93 -0.33 0.50 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -36.18 379.66 -8.28 -44.46 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.53 Total: 11.22 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.66 Total: 6.61 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.37 Total: -54.83 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.73 Total: -27.77 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.18 -8.28 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717294716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.533 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds