Wall clock time and date at job start Sat Apr 11 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99623 * 2 1 4 4 O 1.42902 * 109.46925 * 134.99518 * 3 2 1 5 5 C 1.42901 * 113.99723 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47078 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00086 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00132 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63007 * 180.02562 * 8 6 5 10 10 C 1.53190 * 108.77468 * 233.62912 * 9 8 6 11 11 C 1.53042 * 109.31284 * 305.36751 * 10 9 8 12 12 C 1.52996 * 109.45958 * 301.35558 * 11 10 9 13 13 N 1.46904 * 109.45951 * 181.38715 * 11 10 9 14 14 C 1.46899 * 111.00029 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47371 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47443 * 120.00271 * 22 20 18 25 25 H 1.48504 * 109.46979 * 239.99980 * 22 20 18 26 26 C 1.53036 * 109.52913 * 61.37242 * 11 10 9 27 27 C 1.46922 * 120.63187 * 0.02562 * 8 6 5 28 28 H 1.07998 * 119.99827 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00220 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00220 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47210 * 14.99821 * 3 2 1 32 32 H 1.08997 * 109.46792 * 254.99766 * 3 2 1 33 33 H 1.09007 * 109.47035 * 60.00262 * 5 4 3 34 34 H 1.08994 * 109.47435 * 300.00288 * 5 4 3 35 35 H 1.09004 * 109.58740 * 113.84680 * 9 8 6 36 36 H 1.08992 * 109.70422 * 353.48901 * 9 8 6 37 37 H 1.09004 * 109.49944 * 185.41455 * 10 9 8 38 38 H 1.09005 * 109.52663 * 65.33023 * 10 9 8 39 39 H 1.09001 * 109.47165 * 300.02841 * 12 11 10 40 40 H 1.08995 * 109.47323 * 60.02794 * 12 11 10 41 41 H 1.09004 * 109.47010 * 180.02562 * 12 11 10 42 42 H 1.00902 * 111.00190 * 56.00997 * 13 11 10 43 43 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 44 44 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 45 45 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 46 46 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49835 * 58.58078 * 26 11 10 48 48 H 1.09002 * 109.49904 * 178.67607 * 26 11 10 49 49 H 1.08998 * 109.58884 * 246.15661 * 27 8 6 50 50 H 1.09003 * 109.58454 * 6.44451 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9082 2.4351 1.0321 6 6 4.9944 2.2567 2.0613 7 8 5.0901 1.2103 2.6669 8 7 5.8595 3.2601 2.3089 9 6 6.9241 3.1009 3.3090 10 6 6.8392 4.2592 4.3080 11 6 6.8837 5.5870 3.5484 12 6 8.1787 5.6673 2.7376 13 7 6.8360 6.7003 4.5056 14 6 6.8775 7.9941 3.8110 15 6 6.8262 9.1095 4.8231 16 8 6.7610 8.8521 6.0065 17 7 6.8518 10.3931 4.4132 18 6 6.8057 11.4078 5.3339 19 1 6.7484 11.1786 6.3876 20 6 6.8326 12.7312 4.9111 21 7 6.9018 13.0102 3.6288 22 14 6.7705 14.1138 6.1657 23 1 6.6952 13.5388 7.5328 24 1 7.9938 14.9469 6.0453 25 1 5.5723 14.9550 5.9164 26 6 5.6838 5.6759 2.6027 27 6 5.7560 4.5337 1.5839 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3854 2.1161 0.2660 32 1 2.4754 1.4868 -0.9926 33 1 3.2686 3.2698 1.3192 34 1 4.3586 2.6398 0.0609 35 1 7.8953 3.1155 2.8144 36 1 6.7960 2.1548 3.8347 37 1 7.6811 4.2066 4.9984 38 1 5.9057 4.1908 4.8666 39 1 9.0335 5.6045 3.4110 40 1 8.2144 4.8413 2.0272 41 1 8.2108 6.6132 2.1968 42 1 7.5819 6.6285 5.1814 43 1 7.8000 8.0677 3.2350 44 1 6.0226 8.0736 3.1395 45 1 6.9037 10.5990 3.4666 46 1 6.9203 13.9340 3.3338 47 1 4.7611 5.5938 3.1771 48 1 5.7031 6.6318 2.0793 49 1 6.6321 4.6649 0.9488 50 1 4.8559 4.5321 0.9691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717295547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:15 Heat of formation + Delta-G solvation = -109.712675 kcal Electronic energy + Delta-G solvation = -29488.414871 eV Core-core repulsion = 25322.580681 eV Total energy + Delta-G solvation = -4165.834190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.60832 -40.32757 -39.51248 -38.58801 -36.45922 -35.84235 -34.78004 -33.33606 -32.94118 -32.01145 -29.72594 -28.42301 -28.17297 -26.60636 -26.01351 -24.75232 -23.89425 -21.36502 -21.00641 -20.75329 -19.88568 -19.15659 -18.60240 -17.86888 -17.54265 -17.33808 -16.96173 -16.73552 -16.38108 -16.11204 -16.00930 -15.86414 -15.62013 -15.48097 -15.07750 -14.84609 -14.63158 -14.32013 -14.05184 -13.91596 -13.52403 -13.38139 -13.29572 -13.11383 -13.08548 -12.92634 -12.85360 -12.72086 -12.41008 -12.32181 -12.12620 -12.11004 -11.88606 -11.68665 -11.50168 -11.28974 -10.99528 -10.77445 -10.32560 -10.25789 -9.99883 -9.72162 -9.23556 -8.46256 -5.94359 1.18907 1.36698 1.42395 1.51263 1.56016 1.77835 2.07345 2.29618 2.88549 2.93949 3.21337 3.46733 3.52176 3.70646 3.83716 4.05316 4.07790 4.10684 4.15848 4.20110 4.25486 4.29916 4.31266 4.36454 4.45320 4.47944 4.57225 4.59188 4.61242 4.64321 4.69926 4.80964 4.91304 4.95026 4.98285 5.01172 5.17020 5.26471 5.42149 5.45430 5.48633 5.66308 5.70499 5.93642 6.07638 6.17744 6.35364 6.44323 6.61947 7.10392 7.14353 7.58327 8.14354 8.71202 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.001895 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.442961 B =14769.683329 C =15720.482549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.177 4.177 3 C 0.083 3.917 4 O -0.398 6.398 5 C 0.045 3.955 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.604 5.604 9 C 0.118 3.882 10 C -0.114 4.114 11 C 0.115 3.885 12 C -0.184 4.184 13 N -0.675 5.675 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.990 3.010 23 H -0.276 1.276 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.126 4.126 27 C 0.106 3.894 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.342 0.658 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.397 0.603 46 H 0.277 0.723 47 H 0.060 0.940 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -19.651 -15.463 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.008 3.992 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.457 6.457 8 N -0.338 5.338 9 C -0.004 4.004 10 C -0.152 4.152 11 C 0.024 3.976 12 C -0.243 4.243 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.224 3.776 16 O -0.513 6.513 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.164 4.164 27 C -0.016 4.016 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.161 0.839 43 H 0.088 0.912 44 H 0.125 0.875 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.540 -20.345 -14.298 25.477 hybrid contribution 0.933 1.187 0.187 1.521 sum -4.607 -19.158 -14.111 24.236 Atomic orbital electron populations 1.24063 0.95126 1.03456 0.97912 1.22797 0.96272 0.98151 1.02245 1.21800 0.88307 0.96549 0.92545 1.87998 1.45492 1.36363 1.61841 1.22413 0.92652 0.89216 0.99139 1.20861 0.82575 0.83076 0.83660 1.90697 1.73584 1.29119 1.52265 1.48148 1.30748 1.14666 1.40271 1.21598 0.90588 0.98507 0.89750 1.21833 1.02746 0.92956 0.97715 1.20964 0.95365 0.89821 0.91432 1.22651 0.97008 1.03385 1.01251 1.60244 1.53782 1.00169 1.16429 1.21590 1.03014 0.87649 0.94438 1.21019 0.82035 0.84391 0.90192 1.90497 1.56514 1.84148 1.20143 1.41916 1.64981 1.04524 1.09593 1.19679 1.49693 0.86207 0.90776 0.90574 1.25981 0.96346 1.00087 0.98674 1.69662 1.50296 1.21265 1.14707 0.84909 0.78338 0.77514 0.77807 1.20042 1.19563 1.19625 1.22035 0.97730 0.99535 0.97099 1.22122 1.05292 0.80341 0.93832 0.86779 0.87148 0.87478 0.91101 0.90212 0.87830 0.86789 0.89036 0.90668 0.90178 0.92787 0.92704 0.89812 0.91695 0.83868 0.91160 0.87486 0.76901 0.91308 0.92109 0.89124 0.88301 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 14.31 67.78 0.97 -0.85 16 2 C -0.18 -2.50 9.89 25.64 0.25 -2.25 16 3 C 0.08 1.09 6.35 71.24 0.45 1.55 16 4 O -0.40 -8.25 9.86 -129.94 -1.28 -9.53 16 5 C 0.04 0.65 4.76 71.23 0.34 0.99 16 6 C 0.51 11.25 7.77 87.66 0.68 11.93 16 7 O -0.58 -18.81 15.92 16.00 0.25 -18.55 16 8 N -0.60 -10.39 2.97 -818.85 -2.43 -12.82 16 9 C 0.12 2.18 5.96 86.36 0.51 2.69 16 10 C -0.11 -2.33 5.16 30.67 0.16 -2.18 16 11 C 0.11 2.31 0.71 3.55 0.00 2.31 16 12 C -0.18 -2.95 7.47 71.98 0.54 -2.41 16 13 N -0.67 -19.74 5.71 -474.01 -2.71 -22.44 16 14 C 0.07 2.05 5.38 85.56 0.46 2.51 16 15 C 0.44 20.15 7.82 87.66 0.69 20.84 16 16 O -0.63 -34.49 15.78 -3.05 -0.05 -34.54 16 17 N -0.57 -28.62 5.29 -306.99 -1.62 -30.24 16 18 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 19 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.41 13.05 21.66 0.28 -48.12 16 22 Si 0.99 42.48 29.55 68.60 2.03 44.50 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.13 -2.09 4.71 30.68 0.14 -1.95 16 27 C 0.11 1.16 5.88 86.38 0.51 1.66 16 28 H 0.11 0.97 8.06 -2.91 -0.02 0.94 16 29 H 0.11 0.90 7.90 -2.91 -0.02 0.88 16 30 H 0.11 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.07 0.70 7.86 -2.39 -0.02 0.69 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.04 7.69 -2.38 -0.02 1.02 16 34 H 0.11 0.85 7.94 -2.39 -0.02 0.83 16 35 H 0.09 1.32 6.69 -2.39 -0.02 1.30 16 36 H 0.07 1.71 7.01 -2.39 -0.02 1.69 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.00 4.98 -2.39 -0.01 0.98 16 41 H 0.06 1.05 6.40 -2.38 -0.02 1.03 16 42 H 0.34 10.90 8.42 -89.69 -0.76 10.14 16 43 H 0.07 1.91 6.30 -2.39 -0.02 1.89 16 44 H 0.11 2.96 6.27 -2.39 -0.01 2.94 16 45 H 0.40 18.60 7.90 -92.70 -0.73 17.86 16 46 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.09 1.38 6.33 -2.39 -0.02 1.36 16 49 H 0.10 0.73 6.69 -2.39 -0.02 0.71 16 50 H 0.11 0.63 5.93 -2.39 -0.01 0.61 16 Total: -1.00 -78.30 397.44 0.94 -77.35 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.52 Total: 37.61 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.99 Total: 16.78 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -6.48 Total: -113.63 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -1.07 Total: -62.62 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -78.30 0.94 -77.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717295547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.362 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds