Wall clock time and date at job start Sat Apr 11 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53034 * 109.44526 * 2 1 4 4 C 1.53191 * 109.31056 * 181.38095 * 3 2 1 5 5 N 1.46925 * 108.77516 * 305.36393 * 4 3 2 6 6 C 1.34781 * 120.62808 * 233.63289 * 5 4 3 7 7 O 1.21339 * 120.00278 * 357.54910 * 6 5 4 8 8 C 1.49454 * 119.99560 * 177.55239 * 6 5 4 9 9 O 1.21347 * 120.00037 * 6.62993 * 8 6 5 10 10 N 1.34781 * 119.99725 * 186.63238 * 8 6 5 11 11 C 1.46501 * 119.99969 * 184.92442 * 10 8 6 12 12 C 1.53007 * 112.94107 * 294.19119 * 11 10 8 13 13 C 1.53002 * 109.47196 * 303.79239 * 12 11 10 14 14 O 1.42892 * 109.47095 * 185.00264 * 13 12 11 15 15 C 1.53942 * 113.74271 * 162.59977 * 11 10 8 16 16 N 1.47810 * 86.03509 * 222.08041 * 15 11 10 17 17 C 1.36937 * 134.45568 * 204.64503 * 16 15 11 18 18 H 1.07999 * 119.99777 * 179.87395 * 17 16 15 19 19 C 1.38813 * 119.99965 * 359.86602 * 17 16 15 20 20 N 1.31614 * 120.00040 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99832 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47424 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47265 * 120.00073 * 21 19 17 24 24 H 1.48499 * 109.47015 * 239.99881 * 21 19 17 25 25 C 1.47576 * 91.05327 * 24.54892 * 16 15 11 26 26 C 1.46925 * 118.74129 * 53.60673 * 5 4 3 27 27 C 1.53047 * 109.45941 * 120.05861 * 2 1 3 28 28 H 1.09006 * 109.46935 * 299.96165 * 1 2 3 29 29 H 1.08997 * 109.47572 * 59.96899 * 1 2 3 30 30 H 1.09001 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45757 * 240.02870 * 2 1 3 32 32 H 1.09004 * 109.49918 * 301.32829 * 3 2 1 33 33 H 1.09005 * 109.50192 * 61.42788 * 3 2 1 34 34 H 1.09002 * 109.59002 * 185.57880 * 4 3 2 35 35 H 1.09002 * 109.70576 * 65.22253 * 4 3 2 36 36 H 0.96999 * 120.00202 * 4.91700 * 10 8 6 37 37 H 1.09005 * 109.47096 * 63.79521 * 12 11 10 38 38 H 1.09001 * 109.47044 * 183.79501 * 12 11 10 39 39 H 1.08998 * 109.46941 * 305.00538 * 13 12 11 40 40 H 1.09004 * 109.46974 * 64.99834 * 13 12 11 41 41 H 0.96698 * 113.99828 * 179.97438 * 14 13 12 42 42 H 1.08994 * 113.77167 * 336.34665 * 15 11 10 43 43 H 1.09000 * 113.76734 * 107.74570 * 15 11 10 44 44 H 0.97001 * 119.99695 * 180.02562 * 20 19 17 45 45 H 1.08998 * 113.77080 * 221.14991 * 25 16 15 46 46 H 1.09004 * 113.76820 * 89.75117 * 25 16 15 47 47 H 1.09003 * 109.58704 * 186.60469 * 26 5 4 48 48 H 1.09001 * 109.70100 * 66.24970 * 26 5 4 49 49 H 1.08997 * 109.49639 * 298.58337 * 27 2 1 50 50 H 1.09004 * 109.49371 * 58.64632 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0395 1.4431 0.0000 4 6 3.5710 1.4396 -0.0348 5 7 4.0676 0.6243 1.0821 6 6 4.9610 1.1286 1.9562 7 8 5.3964 2.2503 1.7996 8 6 5.4153 0.3061 3.1184 9 8 5.0747 -0.8550 3.2101 10 7 6.2032 0.8541 4.0648 11 6 6.7368 0.0216 5.1458 12 6 5.6484 -0.5172 6.0764 13 6 4.8384 0.6504 6.6436 14 8 3.8989 0.1578 7.6009 15 6 7.9275 0.6563 5.8868 16 7 8.5354 -0.6905 5.8514 17 6 9.4687 -1.3418 6.6129 18 1 9.7486 -2.3569 6.3727 19 6 10.0552 -0.6973 7.6934 20 7 9.7139 0.5396 7.9863 21 14 11.3290 -1.5855 8.7317 22 1 11.5342 -2.9561 8.1982 23 1 12.6120 -0.8391 8.6869 24 1 10.8529 -1.6676 10.1359 25 6 7.7311 -1.0522 4.6681 26 6 3.5714 -0.7508 1.2283 27 6 2.0399 -0.7228 1.2490 28 1 -0.3633 0.5133 0.8904 29 1 -0.3634 0.5143 -0.8897 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8931 -0.5134 -0.8903 32 1 1.6569 1.9640 -0.8777 33 1 1.6973 1.9498 0.9024 34 1 3.9412 2.4600 0.0648 35 1 3.9163 1.0162 -0.9781 36 1 6.4170 1.7996 4.0301 37 1 4.9879 -1.1801 5.5175 38 1 6.1106 -1.0699 6.8943 39 1 5.5114 1.3589 7.1262 40 1 4.3049 1.1494 5.8345 41 1 3.3499 0.8449 8.0028 42 1 8.4672 1.3975 5.2974 43 1 7.6852 1.0040 6.8910 44 1 10.1240 0.9901 8.7411 45 1 7.3323 -2.0661 4.7011 46 1 8.2130 -0.8139 3.7198 47 1 3.9418 -1.1757 2.1613 48 1 3.9145 -1.3564 0.3894 49 1 1.6976 -0.1957 2.1395 50 1 1.6570 -1.7433 1.2605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717508712.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:19 Heat of formation + Delta-G solvation = -51.896623 kcal Electronic energy + Delta-G solvation = -31213.236408 eV Core-core repulsion = 27049.909310 eV Total energy + Delta-G solvation = -4163.327098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.03978 -39.55589 -38.01793 -37.70645 -36.40708 -34.42911 -33.53536 -31.94899 -31.33537 -30.40949 -28.72251 -27.22985 -25.38906 -25.16487 -23.55857 -23.47837 -22.50859 -21.53878 -20.68552 -19.63972 -18.77904 -17.67067 -17.14071 -16.86606 -16.77402 -15.90041 -15.54705 -15.38332 -14.97197 -14.80888 -14.60499 -14.52455 -14.35314 -14.18297 -13.81257 -13.63265 -13.54130 -13.26388 -12.94961 -12.57612 -12.16751 -12.12797 -12.00609 -11.83785 -11.70909 -11.55255 -11.41914 -11.10659 -11.08709 -10.95533 -10.81387 -10.78577 -10.68761 -10.57369 -10.13206 -9.94137 -9.71261 -9.50541 -9.03072 -8.90802 -8.82761 -8.74078 -6.98523 -5.84293 -3.16761 1.49764 2.36659 3.28064 3.37232 3.42637 3.45265 3.54083 4.31219 4.42271 4.44315 4.49798 4.52101 4.57411 4.87172 5.04122 5.09066 5.11187 5.18240 5.25457 5.35067 5.37587 5.43933 5.47861 5.53394 5.57424 5.66214 5.67369 5.68681 5.73337 5.84814 5.88052 5.88527 5.90240 6.14110 6.21667 6.25379 6.41036 6.48450 6.55378 6.64136 6.78068 7.01867 7.05867 7.18718 7.42882 7.43851 7.82488 7.86712 7.89654 8.18042 8.97158 9.63419 10.47685 11.33302 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002725 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.814187 B =10270.939836 C =10690.437701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.127 4.127 4 C 0.105 3.895 5 N -0.581 5.581 6 C 0.507 3.493 7 O -0.526 6.526 8 C 0.509 3.491 9 O -0.507 6.507 10 N -0.677 5.677 11 C 0.117 3.883 12 C -0.095 4.095 13 C 0.082 3.918 14 O -0.573 6.573 15 C 0.167 3.833 16 N -0.602 5.602 17 C -0.221 4.221 18 H 0.084 0.916 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.127 3.873 26 C 0.044 3.956 27 C -0.127 4.127 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.373 0.627 42 H 0.035 0.965 43 H 0.085 0.915 44 H 0.254 0.746 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.165 0.835 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 2.450 -14.317 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.165 4.165 4 C -0.017 4.017 5 N -0.314 5.314 6 C 0.290 3.710 7 O -0.403 6.403 8 C 0.291 3.709 9 O -0.385 6.385 10 N -0.328 5.328 11 C 0.032 3.968 12 C -0.134 4.134 13 C 0.004 3.996 14 O -0.378 6.378 15 C 0.041 3.959 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.102 0.898 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.000 4.000 26 C -0.077 4.077 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.218 0.782 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.181 0.819 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.405 1.607 -14.220 22.533 hybrid contribution 0.561 0.743 0.315 0.983 sum -16.843 2.351 -13.905 21.967 Atomic orbital electron populations 1.21826 0.95081 1.01777 1.01686 1.21186 0.95687 0.95828 0.98794 1.21967 0.94752 0.97078 1.02746 1.21713 0.94004 0.97186 0.88782 1.47981 1.41374 1.15293 1.26779 1.20311 0.80202 0.86740 0.83797 1.90738 1.55421 1.19295 1.74798 1.20056 0.79913 0.87419 0.83552 1.90238 1.54717 1.17451 1.76115 1.46110 1.47712 1.13980 1.25013 1.23288 0.92790 0.94155 0.86604 1.21363 0.95768 0.97452 0.98798 1.22119 0.90520 0.96700 0.90249 1.86488 1.53397 1.38363 1.59537 1.22617 0.85756 0.88981 0.98589 1.45679 1.47340 1.11181 1.28700 1.19036 1.13760 0.96258 1.05735 0.89834 1.24787 1.00249 0.96365 0.98867 1.69787 1.45672 1.11231 1.30088 0.86011 0.80818 0.78622 0.80091 1.20382 1.21728 1.21606 1.22826 0.89170 0.96652 0.91349 1.23415 0.94119 0.81293 1.08861 1.21966 0.95647 1.01034 0.97838 0.92703 0.92798 0.92585 0.91095 0.90694 0.91446 0.88879 0.91197 0.75390 0.90477 0.88719 0.93142 0.94832 0.78164 0.94776 0.89696 0.93548 0.92652 0.94524 0.81930 0.91821 0.91660 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.10 -0.71 2.68 -90.57 -0.24 -0.96 16 3 C -0.13 -0.98 5.36 -26.61 -0.14 -1.12 16 4 C 0.11 1.00 6.43 -3.71 -0.02 0.98 16 5 N -0.58 -6.83 2.97 -173.28 -0.52 -7.34 16 6 C 0.51 7.20 7.76 -11.58 -0.09 7.11 16 7 O -0.53 -8.39 15.93 5.51 0.09 -8.30 16 8 C 0.51 7.71 7.47 -11.58 -0.09 7.63 16 9 O -0.51 -8.11 11.30 5.50 0.06 -8.05 16 10 N -0.68 -10.52 4.66 -49.50 -0.23 -10.75 16 11 C 0.12 2.15 0.67 -134.04 -0.09 2.06 16 12 C -0.10 -1.74 4.82 -26.73 -0.13 -1.87 16 13 C 0.08 1.29 6.78 37.16 0.25 1.54 16 14 O -0.57 -8.87 13.66 -35.23 -0.48 -9.36 16 15 C 0.17 3.68 6.64 -2.84 -0.02 3.66 16 16 N -0.60 -14.97 3.55 -177.54 -0.63 -15.60 16 17 C -0.22 -6.04 10.70 -15.06 -0.16 -6.20 16 18 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.37 11.39 55.49 0.63 -25.74 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.13 2.64 7.72 -2.97 -0.02 2.62 16 26 C 0.04 0.47 6.24 -3.71 -0.02 0.44 16 27 C -0.13 -1.11 5.36 -26.61 -0.14 -1.25 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.97 7.02 -51.93 -0.36 0.61 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.41 5.90 8.22 -40.82 -0.34 5.57 16 37 H 0.08 1.41 6.82 -51.93 -0.35 1.06 16 38 H 0.09 2.01 8.02 -51.93 -0.42 1.60 16 39 H 0.05 0.81 7.37 -51.93 -0.38 0.43 16 40 H 0.03 0.48 7.85 -51.93 -0.41 0.07 16 41 H 0.37 3.82 9.12 45.56 0.42 4.24 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 2.05 6.49 -51.93 -0.34 1.71 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.17 2.09 3.76 -57.06 -0.21 1.88 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -31.61 394.26 -8.27 -39.88 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.44 Total: 8.69 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -0.68 Total: 13.79 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.74 Total: -59.43 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.33 Total: -25.70 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.61 -8.27 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717508712.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.019 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds