Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53034 * 109.44526 * 2 1 4 4 C 1.53191 * 109.31056 * 181.38095 * 3 2 1 5 5 N 1.46925 * 108.77516 * 305.36393 * 4 3 2 6 6 C 1.34781 * 120.62808 * 233.63289 * 5 4 3 7 7 O 1.21339 * 120.00278 * 357.54910 * 6 5 4 8 8 C 1.49454 * 119.99560 * 177.55239 * 6 5 4 9 9 O 1.21347 * 120.00037 * 6.62993 * 8 6 5 10 10 N 1.34781 * 119.99725 * 186.63238 * 8 6 5 11 11 C 1.46501 * 119.99969 * 184.92442 * 10 8 6 12 12 C 1.53007 * 112.94107 * 294.19119 * 11 10 8 13 13 C 1.53002 * 109.47196 * 303.79239 * 12 11 10 14 14 O 1.42892 * 109.47095 * 185.00264 * 13 12 11 15 15 C 1.53942 * 113.74271 * 162.59977 * 11 10 8 16 16 N 1.47810 * 86.03509 * 222.08041 * 15 11 10 17 17 C 1.36937 * 134.45568 * 204.64503 * 16 15 11 18 18 H 1.07999 * 119.99777 * 179.87395 * 17 16 15 19 19 C 1.38813 * 119.99965 * 359.86602 * 17 16 15 20 20 N 1.31614 * 120.00040 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99832 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47424 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47265 * 120.00073 * 21 19 17 24 24 H 1.48499 * 109.47015 * 239.99881 * 21 19 17 25 25 C 1.47576 * 91.05327 * 24.54892 * 16 15 11 26 26 C 1.46925 * 118.74129 * 53.60673 * 5 4 3 27 27 C 1.53047 * 109.45941 * 120.05861 * 2 1 3 28 28 H 1.09006 * 109.46935 * 299.96165 * 1 2 3 29 29 H 1.08997 * 109.47572 * 59.96899 * 1 2 3 30 30 H 1.09001 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45757 * 240.02870 * 2 1 3 32 32 H 1.09004 * 109.49918 * 301.32829 * 3 2 1 33 33 H 1.09005 * 109.50192 * 61.42788 * 3 2 1 34 34 H 1.09002 * 109.59002 * 185.57880 * 4 3 2 35 35 H 1.09002 * 109.70576 * 65.22253 * 4 3 2 36 36 H 0.96999 * 120.00202 * 4.91700 * 10 8 6 37 37 H 1.09005 * 109.47096 * 63.79521 * 12 11 10 38 38 H 1.09001 * 109.47044 * 183.79501 * 12 11 10 39 39 H 1.08998 * 109.46941 * 305.00538 * 13 12 11 40 40 H 1.09004 * 109.46974 * 64.99834 * 13 12 11 41 41 H 0.96698 * 113.99828 * 179.97438 * 14 13 12 42 42 H 1.08994 * 113.77167 * 336.34665 * 15 11 10 43 43 H 1.09000 * 113.76734 * 107.74570 * 15 11 10 44 44 H 0.97001 * 119.99695 * 180.02562 * 20 19 17 45 45 H 1.08998 * 113.77080 * 221.14991 * 25 16 15 46 46 H 1.09004 * 113.76820 * 89.75117 * 25 16 15 47 47 H 1.09003 * 109.58704 * 186.60469 * 26 5 4 48 48 H 1.09001 * 109.70100 * 66.24970 * 26 5 4 49 49 H 1.08997 * 109.49639 * 298.58337 * 27 2 1 50 50 H 1.09004 * 109.49371 * 58.64632 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0395 1.4431 0.0000 4 6 3.5710 1.4396 -0.0348 5 7 4.0676 0.6243 1.0821 6 6 4.9610 1.1286 1.9562 7 8 5.3964 2.2503 1.7996 8 6 5.4153 0.3061 3.1184 9 8 5.0747 -0.8550 3.2101 10 7 6.2032 0.8541 4.0648 11 6 6.7368 0.0216 5.1458 12 6 5.6484 -0.5172 6.0764 13 6 4.8384 0.6504 6.6436 14 8 3.8989 0.1578 7.6009 15 6 7.9275 0.6563 5.8868 16 7 8.5354 -0.6905 5.8514 17 6 9.4687 -1.3418 6.6129 18 1 9.7486 -2.3569 6.3727 19 6 10.0552 -0.6973 7.6934 20 7 9.7139 0.5396 7.9863 21 14 11.3290 -1.5855 8.7317 22 1 11.5342 -2.9561 8.1982 23 1 12.6120 -0.8391 8.6869 24 1 10.8529 -1.6676 10.1359 25 6 7.7311 -1.0522 4.6681 26 6 3.5714 -0.7508 1.2283 27 6 2.0399 -0.7228 1.2490 28 1 -0.3633 0.5133 0.8904 29 1 -0.3634 0.5143 -0.8897 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8931 -0.5134 -0.8903 32 1 1.6569 1.9640 -0.8777 33 1 1.6973 1.9498 0.9024 34 1 3.9412 2.4600 0.0648 35 1 3.9163 1.0162 -0.9781 36 1 6.4170 1.7996 4.0301 37 1 4.9879 -1.1801 5.5175 38 1 6.1106 -1.0699 6.8943 39 1 5.5114 1.3589 7.1262 40 1 4.3049 1.1494 5.8345 41 1 3.3499 0.8449 8.0028 42 1 8.4672 1.3975 5.2974 43 1 7.6852 1.0040 6.8910 44 1 10.1240 0.9901 8.7411 45 1 7.3323 -2.0661 4.7011 46 1 8.2130 -0.8139 3.7198 47 1 3.9418 -1.1757 2.1613 48 1 3.9145 -1.3564 0.3894 49 1 1.6976 -0.1957 2.1395 50 1 1.6570 -1.7433 1.2605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717508712.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -75.331593 kcal Electronic energy + Delta-G solvation = -31214.252624 eV Core-core repulsion = 27049.909310 eV Total energy + Delta-G solvation = -4164.343314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.23226 -40.88062 -39.21524 -38.80090 -37.70659 -35.63126 -34.76023 -33.76896 -32.09707 -31.92620 -29.50145 -29.04977 -26.91800 -26.55480 -24.91792 -24.32319 -23.59640 -23.06838 -21.70812 -20.57297 -20.23976 -18.85627 -18.74429 -18.38257 -17.90188 -17.14385 -17.01497 -16.75199 -16.45181 -15.89227 -15.75901 -15.67382 -15.41870 -15.23045 -15.08623 -14.91424 -14.43654 -14.37626 -14.26768 -13.86980 -13.72013 -13.35558 -13.26789 -12.92110 -12.81173 -12.77684 -12.70051 -12.63045 -12.47709 -12.25585 -12.13960 -12.00377 -11.81090 -11.74182 -11.47847 -11.35596 -11.31770 -10.97215 -10.86294 -10.30090 -9.97161 -9.79654 -8.98847 -7.93712 -5.27299 0.31984 1.23581 1.47419 1.47670 1.57835 2.10086 2.35160 2.52037 3.07216 3.18423 3.26638 3.44325 3.54504 3.82871 3.87039 3.90816 4.10985 4.14515 4.20726 4.29263 4.34647 4.43332 4.45301 4.56457 4.64486 4.68975 4.75911 4.78160 4.79832 4.82592 4.91803 4.93278 5.07280 5.09747 5.10617 5.12440 5.16717 5.18995 5.25202 5.37872 5.40700 5.46013 5.53129 5.68509 5.86764 5.99306 6.23613 6.71617 6.88707 6.88984 6.95194 7.56081 8.47308 9.23394 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002725 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.814187 B =10270.939836 C =10690.437701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.121 4.121 4 C 0.101 3.899 5 N -0.573 5.573 6 C 0.507 3.493 7 O -0.548 6.548 8 C 0.512 3.488 9 O -0.514 6.514 10 N -0.675 5.675 11 C 0.151 3.849 12 C -0.088 4.088 13 C 0.091 3.909 14 O -0.589 6.589 15 C 0.169 3.831 16 N -0.629 5.629 17 C -0.233 4.233 18 H 0.084 0.916 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.126 3.874 26 C 0.042 3.958 27 C -0.123 4.123 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.417 0.583 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.396 0.604 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.145 0.855 48 H 0.076 0.924 49 H 0.053 0.947 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.646 2.173 -16.016 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.159 4.159 4 C -0.020 4.020 5 N -0.305 5.305 6 C 0.289 3.711 7 O -0.426 6.426 8 C 0.294 3.706 9 O -0.393 6.393 10 N -0.327 5.327 11 C 0.064 3.936 12 C -0.127 4.127 13 C 0.013 3.987 14 O -0.397 6.397 15 C 0.043 3.957 16 N -0.356 5.356 17 C -0.362 4.362 18 H 0.102 0.898 19 C -0.253 4.253 20 N -0.596 5.596 21 Si 0.806 3.194 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.000 4.000 26 C -0.078 4.078 27 C -0.161 4.161 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.255 0.745 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.246 0.754 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.161 0.839 48 H 0.095 0.905 49 H 0.072 0.928 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.144 1.322 -15.964 24.962 hybrid contribution 0.993 0.782 0.756 1.473 sum -18.151 2.103 -15.208 23.773 Atomic orbital electron populations 1.21794 0.94133 1.02191 1.01967 1.21177 0.96415 0.95330 0.98249 1.21949 0.93143 0.97555 1.03294 1.21938 0.95319 0.96380 0.88397 1.48124 1.40078 1.15876 1.26446 1.20016 0.80863 0.86313 0.83873 1.90734 1.56563 1.19984 1.75360 1.20291 0.79362 0.87411 0.83574 1.90291 1.54761 1.17838 1.76374 1.45873 1.48143 1.14028 1.24646 1.22547 0.91806 0.92585 0.86639 1.21229 0.95622 0.98201 0.97651 1.21943 0.90583 0.95248 0.90925 1.86426 1.53641 1.40015 1.59631 1.22479 0.87200 0.88143 0.97828 1.45953 1.47374 1.12393 1.29861 1.19354 1.14027 0.96605 1.06167 0.89840 1.25572 1.02362 0.97248 1.00160 1.69947 1.46736 1.12441 1.30493 0.85018 0.78167 0.78001 0.78164 1.19172 1.21855 1.21773 1.22911 0.89272 0.97461 0.90335 1.23375 0.95540 0.80653 1.08241 1.21937 0.94000 1.01896 0.98237 0.93224 0.91741 0.92146 0.90149 0.88507 0.92478 0.89875 0.89468 0.74531 0.90361 0.92155 0.93685 0.92802 0.75414 0.95120 0.92002 0.94012 0.92647 0.94018 0.83900 0.90543 0.92804 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 2 C -0.09 -1.10 2.68 -10.76 -0.03 -1.13 16 3 C -0.12 -1.54 5.36 30.67 0.16 -1.38 16 4 C 0.10 1.70 6.43 86.36 0.55 2.25 16 5 N -0.57 -12.54 2.97 -820.49 -2.44 -14.98 16 6 C 0.51 13.90 7.76 87.27 0.68 14.58 16 7 O -0.55 -17.03 15.93 -3.21 -0.05 -17.08 16 8 C 0.51 15.11 7.47 87.27 0.65 15.77 16 9 O -0.51 -16.08 11.30 -3.24 -0.04 -16.11 16 10 N -0.67 -20.72 4.66 -428.89 -2.00 -22.72 16 11 C 0.15 5.59 0.67 5.36 0.00 5.60 16 12 C -0.09 -3.25 4.82 30.60 0.15 -3.11 16 13 C 0.09 2.82 6.78 71.98 0.49 3.31 16 14 O -0.59 -17.64 13.66 -148.98 -2.03 -19.68 16 15 C 0.17 7.70 6.64 86.44 0.57 8.27 16 16 N -0.63 -31.99 3.55 -715.60 -2.54 -34.53 16 17 C -0.23 -13.02 10.70 84.03 0.90 -12.13 16 18 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 19 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 20 N -0.95 -55.58 11.39 21.65 0.25 -55.34 16 21 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 C 0.13 5.31 7.72 86.49 0.67 5.98 16 26 C 0.04 0.82 6.24 86.36 0.54 1.36 16 27 C -0.12 -1.88 5.36 30.67 0.16 -1.71 16 28 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 1.61 7.02 -2.39 -0.02 1.59 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.42 11.86 8.22 -92.71 -0.76 11.10 16 37 H 0.08 2.86 6.82 -2.38 -0.02 2.84 16 38 H 0.06 2.65 8.02 -2.39 -0.02 2.63 16 39 H 0.04 1.45 7.37 -2.39 -0.02 1.44 16 40 H 0.05 1.47 7.85 -2.39 -0.02 1.45 16 41 H 0.40 7.49 9.12 -74.06 -0.68 6.81 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 3.11 6.49 -2.39 -0.02 3.09 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.14 3.51 3.76 -83.67 -0.31 3.20 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -68.45 394.26 -0.97 -69.42 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.78 Total: 29.49 kcal Atomic # 6 Polarization: 27.37 SS G_CDS: 6.63 Total: 34.00 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -6.73 Total: -127.56 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.12 Total: -52.87 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.45 -0.97 -69.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717508712.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.908 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds