Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48492 * 109.47093 * 270.00250 * 3 2 1 5 5 H 1.48502 * 109.46614 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47272 * 149.99568 * 3 2 1 7 7 C 1.38818 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99491 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99763 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47138 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46930 * 294.99710 * 11 10 9 13 13 N 1.46506 * 109.47035 * 54.99480 * 11 10 9 14 14 C 1.34775 * 119.99693 * 204.99878 * 13 11 10 15 15 O 1.21274 * 120.00425 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99887 * 180.02562 * 14 13 11 17 17 C 1.52991 * 109.47119 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47117 * 180.02562 * 17 16 14 19 19 H 1.08993 * 110.32887 * 55.79516 * 18 17 16 20 20 C 1.54471 * 110.37192 * 178.16561 * 18 17 16 21 21 C 1.54510 * 104.06318 * 142.80978 * 20 18 17 22 22 C 1.54474 * 104.06424 * 359.97438 * 21 20 18 23 23 H 1.09002 * 110.37446 * 94.85220 * 22 21 20 24 24 C 1.50699 * 110.37455 * 217.19376 * 22 21 20 25 25 N 1.34782 * 119.99909 * 291.82809 * 24 22 21 26 26 O 1.21281 * 120.00099 * 111.83868 * 24 22 21 27 27 O 1.44425 * 104.80285 * 336.02192 * 22 21 20 28 28 C 1.52997 * 109.47143 * 174.99644 * 11 10 9 29 29 C 1.53001 * 117.50135 * 248.74442 * 28 11 10 30 30 C 1.53000 * 117.49905 * 180.08451 * 28 11 10 31 31 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 32 32 H 0.97006 * 120.00155 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47411 * 59.99836 * 10 9 7 34 34 H 1.09000 * 109.46747 * 299.99824 * 10 9 7 35 35 H 0.97000 * 120.00117 * 25.00230 * 13 11 10 36 36 H 1.08999 * 109.46660 * 300.00178 * 16 14 13 37 37 H 1.08994 * 109.46774 * 59.99884 * 16 14 13 38 38 H 1.08999 * 109.47253 * 299.99513 * 17 16 14 39 39 H 1.09003 * 109.47683 * 60.00301 * 17 16 14 40 40 H 1.09000 * 110.51440 * 261.45393 * 20 18 17 41 41 H 1.09002 * 110.51632 * 24.16657 * 20 18 17 42 42 H 1.09007 * 110.51071 * 241.35442 * 21 20 18 43 43 H 1.09003 * 110.51453 * 118.64612 * 21 20 18 44 44 H 0.96998 * 119.99433 * 0.02562 * 25 24 22 45 45 H 0.96995 * 119.99976 * 179.97438 * 25 24 22 46 46 H 1.08996 * 115.55195 * 34.41587 * 28 11 10 47 47 H 1.09002 * 117.49734 * 0.02562 * 29 28 11 48 48 H 1.08994 * 117.49847 * 145.02044 * 29 28 11 49 49 H 1.08995 * 117.50280 * 214.97829 * 30 28 11 50 50 H 1.09012 * 117.49824 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.4973 -4.8139 0.9290 13 7 0.1447 -4.6758 -1.1340 14 6 -1.0798 -5.2367 -1.0831 15 8 -1.4209 -5.8602 -0.1005 16 6 -2.0251 -5.0891 -2.2475 17 6 -3.3360 -5.8133 -1.9351 18 6 -4.2956 -5.6640 -3.1175 19 1 -3.8281 -6.0273 -4.0327 20 6 -5.6103 -6.4271 -2.8428 21 6 -6.7033 -5.5258 -3.4595 22 6 -5.9197 -4.3246 -4.0333 23 1 -5.7029 -4.4827 -5.0898 24 6 -6.6998 -3.0495 -3.8417 25 7 -7.8445 -2.8507 -4.5250 26 8 -6.2976 -2.2022 -3.0729 27 8 -4.6948 -4.2841 -3.2692 28 6 1.8247 -6.1411 -0.1281 29 6 1.6671 -6.9258 -1.4321 30 6 1.0019 -7.4309 -0.1493 31 1 -0.4851 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 2.6841 -3.7150 0.8888 34 1 2.6853 -3.7141 -0.8912 35 1 0.4173 -4.1768 -1.9198 36 1 -2.2266 -4.0319 -2.4201 37 1 -1.5734 -5.5232 -3.1394 38 1 -3.1348 -6.8706 -1.7623 39 1 -3.7876 -5.3789 -1.0432 40 1 -5.5965 -7.4005 -3.3330 41 1 -5.7691 -6.5406 -1.7704 42 1 -7.4025 -5.1938 -2.6920 43 1 -7.2299 -6.0537 -4.2546 44 1 -8.1663 -3.5285 -5.1397 45 1 -8.3468 -2.0302 -4.4014 46 1 2.7969 -6.1725 0.3637 47 1 1.0216 -6.5003 -2.2005 48 1 2.5355 -7.4735 -1.7979 49 1 1.4329 -8.3108 0.3281 50 1 -0.0816 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723315974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -88.609297 kcal Electronic energy + Delta-G solvation = -30032.322423 eV Core-core repulsion = 25867.403344 eV Total energy + Delta-G solvation = -4164.919079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.52668 -39.86875 -38.58577 -37.10444 -34.81939 -34.09011 -33.49419 -33.14282 -32.26227 -31.09517 -29.26432 -27.92321 -25.20801 -23.95304 -22.62934 -22.19171 -21.42769 -21.28697 -20.74561 -20.20020 -19.52761 -17.97104 -17.29178 -17.18726 -16.83727 -16.41036 -16.08572 -15.70695 -15.61729 -14.94867 -14.62739 -14.51520 -14.43616 -13.97242 -13.87057 -13.43711 -13.40964 -13.12773 -12.94903 -12.58785 -12.20749 -12.07340 -12.00557 -11.76892 -11.58795 -11.35121 -11.23977 -11.11651 -10.99260 -10.84168 -10.79851 -10.75788 -10.23176 -10.18223 -10.02982 -9.98096 -9.84006 -9.72964 -9.51783 -9.37650 -8.84993 -8.52401 -6.89287 -5.70350 -3.00864 2.36594 2.87921 3.02945 3.47408 3.52191 3.54832 3.56426 3.78724 4.10980 4.17881 4.38126 4.50729 4.61373 4.64579 4.79914 4.90601 4.95912 4.99312 5.10478 5.22998 5.25785 5.29863 5.33015 5.42170 5.46962 5.55963 5.61149 5.65163 5.77199 5.77873 5.86858 5.89342 6.06907 6.08646 6.13403 6.26694 6.29152 6.38496 6.44280 6.56238 6.57700 6.60440 6.77300 7.01393 7.04526 7.74165 7.97383 8.01502 8.46757 8.65697 9.58428 10.14634 10.49946 11.51609 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007933 B = 0.003211 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.881378 B = 8717.796681 C =11899.024906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.090 0.910 13 N -0.709 5.709 14 C 0.517 3.483 15 O -0.548 6.548 16 C -0.142 4.142 17 C -0.093 4.093 18 C 0.071 3.929 19 H 0.073 0.927 20 C -0.149 4.149 21 C -0.144 4.144 22 C 0.055 3.945 23 H 0.094 0.906 24 C 0.518 3.482 25 N -0.856 5.856 26 O -0.510 6.510 27 O -0.334 6.334 28 C -0.159 4.159 29 C -0.177 4.177 30 C -0.188 4.188 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.032 0.968 34 H 0.025 0.975 35 H 0.405 0.595 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.400 0.600 45 H 0.405 0.595 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -18.061 -13.189 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.108 0.892 13 N -0.360 5.360 14 C 0.304 3.696 15 O -0.427 6.427 16 C -0.182 4.182 17 C -0.131 4.131 18 C 0.014 3.986 19 H 0.091 0.909 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.006 4.006 23 H 0.111 0.889 24 C 0.301 3.699 25 N -0.422 5.422 26 O -0.383 6.383 27 O -0.252 6.252 28 C -0.179 4.179 29 C -0.215 4.215 30 C -0.224 4.224 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.240 0.760 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.228 0.772 45 H 0.236 0.764 46 H 0.126 0.874 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.188 -17.727 -11.816 25.056 hybrid contribution -0.090 1.104 -0.815 1.375 sum -13.279 -16.623 -12.631 24.742 Atomic orbital electron populations 1.69663 1.05047 1.25755 1.57078 1.24759 0.95479 0.97666 1.02822 0.86207 0.78612 0.83975 0.77456 1.21744 1.21787 1.20817 1.19187 0.90959 0.84069 1.43388 0.91211 1.42350 1.06029 0.99683 1.89566 1.20898 0.93066 0.85227 0.98789 1.20722 0.90242 0.92618 0.90157 0.89243 1.46004 1.14709 1.54524 1.20723 1.20580 0.82060 0.78269 0.88720 1.90591 1.76040 1.42000 1.34060 1.21642 0.95014 1.04469 0.97041 1.21374 0.93132 1.01389 0.97234 1.23183 0.94921 0.81706 0.98836 0.90869 1.22990 0.93813 0.98996 1.02870 1.22908 0.98795 0.95128 1.01348 1.22801 0.87096 0.93171 0.97562 0.88853 1.20294 0.81183 0.88146 0.80299 1.43745 1.26231 1.24564 1.47685 1.90858 1.67649 1.44713 1.35041 1.89387 1.37317 1.24776 1.73704 1.22696 1.00707 0.92623 1.01867 1.22872 1.02882 1.04056 0.91658 1.23336 1.01632 0.96735 1.00723 0.93399 0.77933 0.95033 0.95733 0.76026 0.87718 0.89454 0.89819 0.89954 0.90022 0.89823 0.90167 0.89703 0.77240 0.76370 0.87446 0.89032 0.89665 0.89915 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.06 55.49 0.72 -28.24 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.71 5.43 -59.91 -0.33 -19.03 16 10 C 0.15 2.99 5.80 -4.04 -0.02 2.97 16 11 C 0.17 2.94 2.59 -67.93 -0.18 2.76 16 12 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 13 N -0.71 -11.61 3.05 -53.80 -0.16 -11.78 16 14 C 0.52 8.40 6.67 -10.98 -0.07 8.33 16 15 O -0.55 -10.26 13.01 5.56 0.07 -10.19 16 16 C -0.14 -1.87 5.62 -27.88 -0.16 -2.02 16 17 C -0.09 -1.12 4.14 -26.73 -0.11 -1.23 16 18 C 0.07 0.70 3.28 -25.96 -0.09 0.62 16 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.15 -1.11 6.63 -25.17 -0.17 -1.27 16 21 C -0.14 -0.94 6.62 -25.17 -0.17 -1.11 16 22 C 0.06 0.51 3.71 -27.11 -0.10 0.41 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 C 0.52 5.86 7.34 -10.98 -0.08 5.78 16 25 N -0.86 -5.15 8.87 31.22 0.28 -4.87 16 26 O -0.51 -9.03 17.39 -13.64 -0.24 -9.27 16 27 O -0.33 -4.46 10.26 -54.42 -0.56 -5.02 16 28 C -0.16 -2.33 5.70 -90.62 -0.52 -2.85 16 29 C -0.18 -2.30 9.74 -26.69 -0.26 -2.56 16 30 C -0.19 -2.63 9.82 -26.69 -0.26 -2.89 16 31 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 32 H 0.39 10.62 7.33 -40.82 -0.30 10.32 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.40 6.42 8.60 -40.82 -0.35 6.07 16 36 H 0.10 1.58 7.91 -51.93 -0.41 1.17 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 42 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.40 0.89 8.83 -40.82 -0.36 0.53 16 45 H 0.40 2.21 8.93 -40.82 -0.36 1.85 16 46 H 0.11 1.47 8.11 -51.93 -0.42 1.05 16 47 H 0.09 1.18 6.67 -51.93 -0.35 0.84 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.12 1.88 5.02 -51.92 -0.26 1.62 16 LS Contribution 405.45 15.07 6.11 6.11 Total: -1.00 -38.02 405.45 -9.77 -47.78 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -8.22 Total: 17.20 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.43 Total: -0.57 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.51 Total: -63.93 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.72 Total: -24.48 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.02 -9.77 -47.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723315974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.825 kcal (2) G-P(sol) polarization free energy of solvation -38.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds