Wall clock time and date at job start Sat Apr 11 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48492 * 109.47093 * 270.00250 * 3 2 1 5 5 H 1.48502 * 109.46614 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47272 * 149.99568 * 3 2 1 7 7 C 1.38818 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99491 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99763 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47138 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46930 * 294.99710 * 11 10 9 13 13 N 1.46506 * 109.47035 * 54.99480 * 11 10 9 14 14 C 1.34775 * 119.99693 * 204.99878 * 13 11 10 15 15 O 1.21274 * 120.00425 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99887 * 180.02562 * 14 13 11 17 17 C 1.52991 * 109.47119 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47117 * 180.02562 * 17 16 14 19 19 H 1.08993 * 110.32887 * 55.79516 * 18 17 16 20 20 C 1.54471 * 110.37192 * 178.16561 * 18 17 16 21 21 C 1.54510 * 104.06318 * 142.80978 * 20 18 17 22 22 C 1.54474 * 104.06424 * 359.97438 * 21 20 18 23 23 H 1.09002 * 110.37446 * 94.85220 * 22 21 20 24 24 C 1.50699 * 110.37455 * 217.19376 * 22 21 20 25 25 N 1.34782 * 119.99909 * 291.82809 * 24 22 21 26 26 O 1.21281 * 120.00099 * 111.83868 * 24 22 21 27 27 O 1.44425 * 104.80285 * 336.02192 * 22 21 20 28 28 C 1.52997 * 109.47143 * 174.99644 * 11 10 9 29 29 C 1.53001 * 117.50135 * 248.74442 * 28 11 10 30 30 C 1.53000 * 117.49905 * 180.08451 * 28 11 10 31 31 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 32 32 H 0.97006 * 120.00155 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47411 * 59.99836 * 10 9 7 34 34 H 1.09000 * 109.46747 * 299.99824 * 10 9 7 35 35 H 0.97000 * 120.00117 * 25.00230 * 13 11 10 36 36 H 1.08999 * 109.46660 * 300.00178 * 16 14 13 37 37 H 1.08994 * 109.46774 * 59.99884 * 16 14 13 38 38 H 1.08999 * 109.47253 * 299.99513 * 17 16 14 39 39 H 1.09003 * 109.47683 * 60.00301 * 17 16 14 40 40 H 1.09000 * 110.51440 * 261.45393 * 20 18 17 41 41 H 1.09002 * 110.51632 * 24.16657 * 20 18 17 42 42 H 1.09007 * 110.51071 * 241.35442 * 21 20 18 43 43 H 1.09003 * 110.51453 * 118.64612 * 21 20 18 44 44 H 0.96998 * 119.99433 * 0.02562 * 25 24 22 45 45 H 0.96995 * 119.99976 * 179.97438 * 25 24 22 46 46 H 1.08996 * 115.55195 * 34.41587 * 28 11 10 47 47 H 1.09002 * 117.49734 * 0.02562 * 29 28 11 48 48 H 1.08994 * 117.49847 * 145.02044 * 29 28 11 49 49 H 1.08995 * 117.50280 * 214.97829 * 30 28 11 50 50 H 1.09012 * 117.49824 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.4973 -4.8139 0.9290 13 7 0.1447 -4.6758 -1.1340 14 6 -1.0798 -5.2367 -1.0831 15 8 -1.4209 -5.8602 -0.1005 16 6 -2.0251 -5.0891 -2.2475 17 6 -3.3360 -5.8133 -1.9351 18 6 -4.2956 -5.6640 -3.1175 19 1 -3.8281 -6.0273 -4.0327 20 6 -5.6103 -6.4271 -2.8428 21 6 -6.7033 -5.5258 -3.4595 22 6 -5.9197 -4.3246 -4.0333 23 1 -5.7029 -4.4827 -5.0898 24 6 -6.6998 -3.0495 -3.8417 25 7 -7.8445 -2.8507 -4.5250 26 8 -6.2976 -2.2022 -3.0729 27 8 -4.6948 -4.2841 -3.2692 28 6 1.8247 -6.1411 -0.1281 29 6 1.6671 -6.9258 -1.4321 30 6 1.0019 -7.4309 -0.1493 31 1 -0.4851 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 2.6841 -3.7150 0.8888 34 1 2.6853 -3.7141 -0.8912 35 1 0.4173 -4.1768 -1.9198 36 1 -2.2266 -4.0319 -2.4201 37 1 -1.5734 -5.5232 -3.1394 38 1 -3.1348 -6.8706 -1.7623 39 1 -3.7876 -5.3789 -1.0432 40 1 -5.5965 -7.4005 -3.3330 41 1 -5.7691 -6.5406 -1.7704 42 1 -7.4025 -5.1938 -2.6920 43 1 -7.2299 -6.0537 -4.2546 44 1 -8.1663 -3.5285 -5.1397 45 1 -8.3468 -2.0302 -4.4014 46 1 2.7969 -6.1725 0.3637 47 1 1.0216 -6.5003 -2.2005 48 1 2.5355 -7.4735 -1.7979 49 1 1.4329 -8.3108 0.3281 50 1 -0.0816 -7.3380 -0.0732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723315974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:26 Heat of formation + Delta-G solvation = -118.181123 kcal Electronic energy + Delta-G solvation = -30033.604753 eV Core-core repulsion = 25867.403344 eV Total energy + Delta-G solvation = -4166.201409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40592 -41.09974 -39.47419 -38.39774 -36.54464 -34.92849 -34.76609 -34.44592 -33.06509 -32.87376 -30.40850 -29.33919 -26.32163 -25.72362 -23.53823 -23.36116 -22.91600 -22.08294 -21.49006 -21.42260 -20.85322 -19.26254 -18.68480 -18.04253 -17.85644 -17.48455 -17.25532 -17.05271 -16.61790 -16.47967 -15.79328 -15.61545 -15.34835 -15.30812 -15.17608 -14.79910 -14.59881 -14.58090 -14.24784 -13.88887 -13.53848 -13.13064 -13.01976 -12.86670 -12.75177 -12.67203 -12.65964 -12.59008 -12.28972 -12.10290 -11.96721 -11.86434 -11.83913 -11.63550 -11.25017 -11.07205 -10.99920 -10.82422 -10.74066 -10.66380 -10.64645 -9.89926 -9.03076 -7.94865 -5.25525 1.45990 1.48395 1.53223 1.57006 1.70831 2.21080 2.28912 2.54886 2.98570 3.09412 3.39194 3.51778 3.64312 3.74212 3.85050 3.93984 3.97172 4.01975 4.12545 4.14204 4.19487 4.22345 4.33177 4.40565 4.51210 4.51377 4.58063 4.67422 4.68280 4.78760 4.86544 4.89254 4.91651 5.04179 5.07537 5.09800 5.14795 5.17193 5.28928 5.30347 5.43234 5.48646 5.64399 5.78833 5.92780 6.24348 6.45106 6.63824 7.31677 7.32432 7.33489 8.05952 8.29276 9.27903 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007933 B = 0.003211 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.881378 B = 8717.796681 C =11899.024906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.055 0.945 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.576 6.576 16 C -0.133 4.133 17 C -0.089 4.089 18 C 0.069 3.931 19 H 0.104 0.896 20 C -0.147 4.147 21 C -0.134 4.134 22 C 0.049 3.951 23 H 0.131 0.869 24 C 0.511 3.489 25 N -0.827 5.827 26 O -0.591 6.591 27 O -0.384 6.384 28 C -0.170 4.170 29 C -0.157 4.157 30 C -0.188 4.188 31 H 0.249 0.751 32 H 0.373 0.627 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.408 0.592 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.422 0.578 45 H 0.409 0.591 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.101 0.899 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 -20.401 -15.885 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.024 3.976 11 C 0.072 3.928 12 H 0.073 0.927 13 N -0.358 5.358 14 C 0.300 3.700 15 O -0.456 6.456 16 C -0.173 4.173 17 C -0.127 4.127 18 C 0.013 3.987 19 H 0.121 0.879 20 C -0.184 4.184 21 C -0.172 4.172 22 C -0.012 4.012 23 H 0.148 0.852 24 C 0.295 3.705 25 N -0.393 5.393 26 O -0.470 6.470 27 O -0.303 6.303 28 C -0.190 4.190 29 C -0.194 4.194 30 C -0.225 4.225 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.143 0.857 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.134 0.866 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.254 0.746 45 H 0.241 0.759 46 H 0.139 0.861 47 H 0.110 0.890 48 H 0.128 0.872 49 H 0.119 0.881 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.619 -20.133 -14.572 27.873 hybrid contribution -0.293 1.763 0.027 1.787 sum -12.912 -18.370 -14.545 26.753 Atomic orbital electron populations 1.69853 1.06837 1.25980 1.59356 1.25615 0.96256 1.01302 1.03647 0.85115 0.77636 0.79328 0.77509 1.21132 1.22711 1.19157 1.19642 0.91594 0.85076 1.41300 0.90146 1.42551 1.05606 1.01037 1.89510 1.21035 0.93426 0.83922 0.99255 1.20443 0.89646 0.93434 0.89243 0.92700 1.45993 1.14852 1.54538 1.20397 1.21156 0.82106 0.77543 0.89218 1.90579 1.76450 1.43298 1.35310 1.21641 0.95087 1.03482 0.97044 1.21341 0.92894 1.01462 0.97045 1.23332 0.95706 0.80976 0.98729 0.87870 1.23014 0.92636 1.00393 1.02383 1.22946 0.98113 0.93938 1.02219 1.23144 0.86049 0.92818 0.99145 0.85201 1.20903 0.81985 0.88181 0.79385 1.43534 1.24339 1.25142 1.46316 1.90822 1.69975 1.47411 1.38801 1.89355 1.39241 1.26884 1.74835 1.22589 1.01000 0.91152 1.04259 1.22965 1.03221 1.02514 0.90732 1.23278 1.00384 0.96811 1.02006 0.94234 0.79549 0.94755 0.94136 0.75654 0.90058 0.85740 0.88493 0.93874 0.86617 0.91595 0.91576 0.85128 0.74565 0.75893 0.86080 0.89000 0.87202 0.88066 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.61 13.06 21.65 0.28 -62.32 16 2 C -0.08 -4.51 5.50 84.87 0.47 -4.05 16 3 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -38.82 5.43 -343.44 -1.87 -40.69 16 10 C 0.15 6.06 5.80 86.38 0.50 6.56 16 11 C 0.18 6.32 2.59 44.99 0.12 6.44 16 12 H 0.05 2.33 7.58 -2.38 -0.02 2.31 16 13 N -0.71 -23.63 3.05 -442.52 -1.35 -24.99 16 14 C 0.51 17.21 6.67 87.66 0.58 17.79 16 15 O -0.58 -22.61 13.01 -3.01 -0.04 -22.65 16 16 C -0.13 -3.57 5.62 29.85 0.17 -3.40 16 17 C -0.09 -2.20 4.14 30.59 0.13 -2.07 16 18 C 0.07 1.29 3.28 31.10 0.10 1.39 16 19 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 20 C -0.15 -1.87 6.63 31.61 0.21 -1.66 16 21 C -0.13 -1.42 6.62 31.61 0.21 -1.21 16 22 C 0.05 0.85 3.71 30.35 0.11 0.96 16 23 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 24 C 0.51 11.67 7.34 87.66 0.64 12.31 16 25 N -0.83 -8.91 8.87 -173.53 -1.54 -10.45 16 26 O -0.59 -22.47 17.39 15.32 0.27 -22.20 16 27 O -0.38 -10.45 10.26 -130.63 -1.34 -11.79 16 28 C -0.17 -4.78 5.70 -10.79 -0.06 -4.84 16 29 C -0.16 -3.67 9.74 30.62 0.30 -3.37 16 30 C -0.19 -5.01 9.82 30.62 0.30 -4.71 16 31 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.37 21.34 7.33 -92.70 -0.68 20.66 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 13.05 8.60 -92.71 -0.80 12.26 16 36 H 0.08 2.62 7.91 -2.39 -0.02 2.60 16 37 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 39 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 42 H 0.07 0.90 7.86 -2.38 -0.02 0.88 16 43 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.42 0.68 8.83 -92.71 -0.82 -0.14 16 45 H 0.41 4.17 8.93 -92.71 -0.83 3.35 16 46 H 0.12 3.07 8.11 -2.39 -0.02 3.05 16 47 H 0.09 2.15 6.67 -2.39 -0.02 2.13 16 48 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.09 3.04 5.02 -2.38 -0.01 3.02 16 Total: -1.00 -89.08 405.45 -1.08 -90.15 By element: Atomic # 1 Polarization: 50.30 SS G_CDS: -2.13 Total: 48.17 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 4.62 Total: 7.06 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -4.48 Total: -138.45 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.11 Total: -56.64 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -89.08 -1.08 -90.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723315974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.030 kcal (2) G-P(sol) polarization free energy of solvation -89.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds