Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47450 * 270.00335 * 3 2 1 5 5 H 1.48504 * 109.46801 * 30.00377 * 3 2 1 6 6 H 1.48503 * 109.47066 * 149.99937 * 3 2 1 7 7 C 1.38950 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00164 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00140 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47568 * 180.02562 * 12 10 9 14 14 C 1.47959 * 110.99446 * 269.36244 * 13 12 10 15 15 C 1.53936 * 86.17619 * 222.41235 * 14 13 12 16 16 C 1.47954 * 111.00130 * 170.00106 * 13 12 10 17 17 H 1.08994 * 113.86095 * 23.24891 * 16 13 12 18 18 C 1.53006 * 113.75855 * 251.89601 * 16 13 12 19 19 N 1.46500 * 109.46998 * 58.93659 * 18 16 13 20 20 C 1.34769 * 120.00237 * 180.02562 * 19 18 16 21 21 O 1.21282 * 119.99854 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00461 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47592 * 179.97438 * 22 20 19 24 24 C 1.52993 * 109.47473 * 180.02562 * 23 22 20 25 25 H 1.09003 * 110.80229 * 305.70202 * 24 23 22 26 26 C 1.54810 * 110.91141 * 182.07587 * 24 23 22 27 27 C 1.54102 * 104.18628 * 220.91979 * 26 24 23 28 28 O 1.43742 * 107.29567 * 357.96799 * 27 26 24 29 29 C 1.44419 * 107.00022 * 26.48843 * 28 27 26 30 30 H 0.96998 * 119.99874 * 359.97438 * 1 2 3 31 31 H 0.96994 * 119.99526 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47667 * 59.99729 * 12 10 9 33 33 H 1.09003 * 109.47280 * 299.99567 * 12 10 9 34 34 H 1.08996 * 113.76002 * 108.09851 * 14 13 12 35 35 H 1.09000 * 113.86523 * 336.73699 * 14 13 12 36 36 H 1.08999 * 113.73602 * 269.36234 * 15 14 13 37 37 H 1.09004 * 113.83104 * 138.09452 * 15 14 13 38 38 H 1.08993 * 109.46955 * 178.93884 * 18 16 13 39 39 H 1.09000 * 109.47050 * 298.93713 * 18 16 13 40 40 H 0.97010 * 119.99909 * 359.97438 * 19 18 16 41 41 H 1.08996 * 109.47077 * 300.00146 * 22 20 19 42 42 H 1.09004 * 109.46818 * 59.99313 * 22 20 19 43 43 H 1.09004 * 109.47108 * 300.00035 * 23 22 20 44 44 H 1.09000 * 109.46870 * 59.99930 * 23 22 20 45 45 H 1.09007 * 110.48544 * 339.59260 * 26 24 23 46 46 H 1.09003 * 110.49198 * 102.10923 * 26 24 23 47 47 H 1.09006 * 109.87540 * 117.39383 * 27 26 24 48 48 H 1.09000 * 109.87396 * 238.38845 * 27 26 24 49 49 H 1.09001 * 110.65174 * 201.48475 * 29 28 27 50 50 H 1.08995 * 110.60746 * 78.47116 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9795 -0.0014 14 6 2.5323 -6.3925 -1.3825 15 6 2.4129 -7.8387 -0.8689 16 6 1.5089 -7.2665 0.2378 17 1 0.4505 -7.2545 -0.0220 18 6 1.7770 -7.8615 1.6217 19 7 1.3447 -6.9145 2.6525 20 6 1.4850 -7.2268 3.9560 21 8 1.9687 -8.2920 4.2757 22 6 1.0398 -6.2529 5.0164 23 6 1.3080 -6.8477 6.4003 24 6 0.8555 -5.8592 7.4768 25 1 1.3212 -4.8850 7.3282 26 6 1.1595 -6.4067 8.8926 27 6 -0.0881 -6.0350 9.7172 28 8 -0.9721 -5.3057 8.8496 29 6 -0.6894 -5.7359 7.5002 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0016 32 1 0.6175 -4.9205 -0.8924 33 1 0.6169 -4.9209 0.8876 34 1 3.5410 -6.1180 -1.6912 35 1 1.7745 -6.1238 -2.1185 36 1 3.3512 -8.2519 -0.4991 37 1 1.8952 -8.5085 -1.5556 38 1 1.2231 -8.7940 1.7298 39 1 2.8435 -8.0574 1.7326 40 1 0.9582 -6.0623 2.3968 41 1 1.5930 -5.3199 4.9082 42 1 -0.0268 -6.0576 4.9056 43 1 0.7545 -7.7805 6.5083 44 1 2.3746 -7.0432 6.5112 45 1 1.2892 -7.4886 8.8635 46 1 2.0480 -5.9277 9.3042 47 1 -0.5808 -6.9403 10.0723 48 1 0.1997 -5.4131 10.5648 49 1 -1.0259 -4.9898 6.7804 50 1 -1.1545 -6.7011 7.2999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723416636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -121.974808 kcal Electronic energy + Delta-G solvation = -29495.330450 eV Core-core repulsion = 25328.964535 eV Total energy + Delta-G solvation = -4166.365916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46424 -40.71177 -40.11553 -39.49138 -35.94848 -35.68409 -35.36911 -33.30272 -32.16153 -31.78976 -30.06350 -28.86799 -27.49142 -25.58768 -25.28891 -24.04681 -23.12107 -21.51151 -21.22706 -21.05747 -20.48879 -19.89652 -18.19678 -17.73602 -17.52076 -17.26753 -16.84887 -16.74310 -16.61558 -16.41642 -16.25867 -15.98038 -15.59328 -15.36362 -15.13742 -14.86843 -14.53258 -14.29284 -14.05357 -13.89535 -13.71344 -13.52004 -13.19977 -13.00622 -12.91795 -12.59788 -12.49121 -12.42431 -12.33997 -12.29275 -12.13860 -11.97166 -11.84697 -11.76275 -11.63952 -11.48567 -11.43441 -10.84970 -10.63213 -10.35538 -10.04594 -9.98938 -9.62084 -8.45721 -5.93637 1.37466 1.41912 1.53695 1.65726 2.07265 2.17796 2.29602 2.77171 3.01565 3.20669 3.36340 3.55287 3.59994 3.71897 3.78488 3.82928 3.98129 4.05994 4.14826 4.17751 4.24761 4.29936 4.32785 4.35839 4.41138 4.44093 4.52597 4.61565 4.67078 4.70560 4.79885 4.84028 4.86448 4.87191 4.91660 4.99311 5.04077 5.05350 5.20434 5.24456 5.33708 5.37947 5.42370 5.54825 5.92894 5.93722 6.12404 6.52318 6.62893 7.15477 7.23982 7.59238 8.16328 8.71400 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007072 B = 0.002971 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3958.565305 B = 9422.533914 C =12760.255842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.987 3.013 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.074 0.926 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.619 6.619 12 C 0.023 3.977 13 N -0.477 5.477 14 C 0.001 3.999 15 C -0.116 4.116 16 C 0.019 3.981 17 H 0.111 0.889 18 C 0.143 3.857 19 N -0.720 5.720 20 C 0.509 3.491 21 O -0.585 6.585 22 C -0.142 4.142 23 C -0.081 4.081 24 C -0.120 4.120 25 H 0.086 0.914 26 C -0.151 4.151 27 C 0.041 3.959 28 O -0.406 6.406 29 C 0.045 3.955 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.405 0.595 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -16.300 9.054 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.092 0.908 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.505 6.505 12 C -0.109 4.109 13 N -0.200 5.200 14 C -0.127 4.127 15 C -0.154 4.154 16 C -0.090 4.090 17 H 0.128 0.872 18 C 0.019 3.981 19 N -0.371 5.371 20 C 0.297 3.703 21 O -0.466 6.466 22 C -0.182 4.182 23 C -0.120 4.120 24 C -0.138 4.138 25 H 0.104 0.896 26 C -0.188 4.188 27 C -0.035 4.035 28 O -0.326 6.326 29 C -0.031 4.031 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.241 0.759 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.118 0.882 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.728 -16.510 9.786 19.551 hybrid contribution -0.541 1.298 -0.807 1.621 sum -4.269 -15.212 8.979 18.173 Atomic orbital electron populations 1.69653 1.06627 1.29183 1.50472 1.25932 0.96494 1.02093 0.96441 0.85015 0.77954 0.77350 0.78573 1.19789 1.19502 1.20006 1.19585 0.92507 0.84133 1.49816 0.90751 1.41929 1.09246 1.04605 1.65460 1.20808 0.88229 0.85898 0.82105 1.90510 1.16065 1.87909 1.56024 1.22415 0.94463 0.90229 1.03785 1.68379 1.30658 1.00616 1.20363 1.23912 1.02189 0.95959 0.90655 1.23249 1.00201 0.95536 0.96375 1.23876 0.99511 0.90594 0.95025 0.87175 1.21276 0.99788 0.92130 0.84937 1.46015 1.63566 1.21791 1.05701 1.21156 0.77417 0.87655 0.84029 1.90658 1.46577 1.26761 1.82563 1.21783 1.04802 0.98502 0.93114 1.21166 1.01903 0.97753 0.91130 1.22741 0.96303 0.99928 0.94874 0.89610 1.23002 0.98928 1.02571 0.94339 1.23294 0.89629 0.96727 0.93868 1.88848 1.60641 1.65211 1.17915 1.23816 0.94258 1.00865 0.84142 0.91349 0.76972 0.89848 0.87641 0.91506 0.90007 0.89236 0.87524 0.89835 0.92933 0.75911 0.88210 0.86570 0.91182 0.91991 0.89787 0.89710 0.91616 0.89173 0.88232 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.17 13.05 21.66 0.28 -47.88 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.99 42.39 29.55 68.60 2.03 44.41 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 8 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.57 -28.26 5.29 -306.99 -1.62 -29.88 16 10 C 0.44 20.15 7.83 87.65 0.69 20.84 16 11 O -0.62 -34.09 16.01 -3.09 -0.05 -34.13 16 12 C 0.02 0.70 5.12 85.55 0.44 1.14 16 13 N -0.48 -13.74 5.33 -888.45 -4.74 -18.47 16 14 C 0.00 0.04 7.95 86.41 0.69 0.72 16 15 C -0.12 -2.05 7.84 31.24 0.25 -1.80 16 16 C 0.02 0.37 3.38 45.02 0.15 0.53 16 17 H 0.11 1.62 7.93 -2.39 -0.02 1.60 16 18 C 0.14 3.11 5.80 86.38 0.50 3.61 16 19 N -0.72 -16.51 5.50 -463.06 -2.55 -19.06 16 20 C 0.51 12.71 7.83 87.66 0.69 13.40 16 21 O -0.58 -18.54 15.98 -3.04 -0.05 -18.59 16 22 C -0.14 -2.65 5.58 29.85 0.17 -2.48 16 23 C -0.08 -1.48 3.90 30.59 0.12 -1.36 16 24 C -0.12 -1.95 3.12 -9.49 -0.03 -1.98 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 C -0.15 -2.17 6.60 31.58 0.21 -1.96 16 27 C 0.04 0.64 7.70 72.35 0.56 1.20 16 28 O -0.41 -8.67 11.52 -148.98 -1.72 -10.39 16 29 C 0.05 0.77 6.49 72.67 0.47 1.24 16 30 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16 32 H 0.08 2.18 7.38 -2.39 -0.02 2.16 16 33 H 0.11 2.65 6.40 -2.39 -0.02 2.64 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.82 7.48 -2.39 -0.02 1.81 16 36 H 0.09 1.68 7.94 -2.39 -0.02 1.66 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.38 7.91 -2.39 -0.02 1.36 16 40 H 0.41 8.68 6.54 -92.70 -0.61 8.07 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.12 1.62 7.58 -2.39 -0.02 1.60 16 43 H 0.07 1.31 8.00 -2.38 -0.02 1.29 16 44 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.08 1.10 7.86 -2.38 -0.02 1.09 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.10 1.54 8.11 -2.39 -0.02 1.52 16 50 H 0.07 1.05 7.97 -2.39 -0.02 1.03 16 Total: -1.00 -74.90 405.59 -2.63 -77.53 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -0.39 Total: 41.01 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.17 Total: 15.46 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -8.62 Total: -115.30 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -1.81 Total: -63.11 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -74.90 -2.63 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723416636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.450 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds