Wall clock time and date at job start Sat Apr 11 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00388 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47121 * 299.99848 * 3 2 1 6 6 H 1.48502 * 109.47105 * 59.99791 * 3 2 1 7 7 C 1.38950 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.47475 * 110.99695 * 265.97352 * 13 12 10 15 15 C 1.53521 * 87.93048 * 221.29471 * 14 13 12 16 16 C 1.47472 * 111.00187 * 169.99871 * 13 12 10 17 17 H 1.09007 * 113.47537 * 23.93571 * 16 13 12 18 18 C 1.53003 * 113.48035 * 253.53045 * 16 13 12 19 19 N 1.46496 * 109.46887 * 54.99690 * 18 16 13 20 20 C 1.34777 * 120.00131 * 179.97438 * 19 18 16 21 21 O 1.21284 * 119.99423 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00354 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.47191 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47195 * 180.02562 * 23 22 20 25 25 H 1.09002 * 110.46164 * 52.38953 * 24 23 22 26 26 C 1.54506 * 110.51607 * 174.99923 * 24 23 22 27 27 C 1.54479 * 104.06658 * 118.64117 * 26 24 23 28 28 O 1.44427 * 104.79979 * 23.97941 * 27 26 24 29 29 C 1.44416 * 105.27861 * 319.49146 * 28 27 26 30 30 H 0.96999 * 119.99752 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9 33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9 34 34 H 1.09003 * 113.47854 * 336.05764 * 14 13 12 35 35 H 1.08998 * 113.48126 * 106.52852 * 14 13 12 36 36 H 1.08998 * 114.16825 * 272.37696 * 15 14 13 37 37 H 1.08995 * 114.34304 * 139.68372 * 15 14 13 38 38 H 1.08995 * 109.47157 * 174.99659 * 18 16 13 39 39 H 1.09001 * 109.46880 * 294.99958 * 18 16 13 40 40 H 0.97002 * 120.00105 * 0.02562 * 19 18 16 41 41 H 1.08998 * 109.47349 * 300.00394 * 22 20 19 42 42 H 1.09001 * 109.47099 * 60.00337 * 22 20 19 43 43 H 1.08995 * 109.46814 * 299.99724 * 23 22 20 44 44 H 1.08994 * 109.47076 * 60.00303 * 23 22 20 45 45 H 1.08997 * 110.51468 * 237.29365 * 26 24 23 46 46 H 1.09010 * 110.50967 * 359.97438 * 26 24 23 47 47 H 1.08997 * 110.37434 * 142.81261 * 27 26 24 48 48 H 1.09000 * 110.37224 * 265.04131 * 27 26 24 49 49 H 1.09009 * 110.37172 * 281.67683 * 29 28 27 50 50 H 1.09002 * 110.37778 * 159.34542 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1981 -5.9796 0.0016 14 6 2.4680 -6.4447 -1.3716 15 6 2.4115 -7.8824 -0.8362 16 6 1.5110 -7.2623 0.2413 17 1 0.4555 -7.2470 -0.0309 18 6 1.7527 -7.8311 1.6409 19 7 1.3798 -6.8318 2.6452 20 6 1.5083 -7.1141 3.9568 21 8 1.9332 -8.1952 4.3056 22 6 1.1242 -6.0864 4.9899 23 6 1.3660 -6.6552 6.3895 24 6 0.9754 -5.6121 7.4384 25 1 -0.0365 -5.2496 7.2570 26 6 1.0914 -6.2045 8.8607 27 6 2.1540 -5.3203 9.5502 28 8 2.1205 -4.0710 8.8263 29 6 1.9816 -4.4399 7.4370 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6166 -4.9209 -0.8886 33 1 0.6172 -4.9205 0.8913 34 1 1.6680 -6.2113 -2.0743 35 1 3.4522 -6.1576 -1.7418 36 1 3.3639 -8.2566 -0.4608 37 1 1.9012 -8.5868 -1.4932 38 1 1.1479 -8.7274 1.7782 39 1 2.8071 -8.0834 1.7535 40 1 1.0396 -5.9673 2.3662 41 1 1.7288 -5.1899 4.8530 42 1 0.0698 -5.8342 4.8770 43 1 0.7615 -7.5518 6.5267 44 1 2.4204 -6.9070 6.5022 45 1 0.1375 -6.1330 9.3832 46 1 1.4266 -7.2409 8.8165 47 1 1.8933 -5.1599 10.5963 48 1 3.1391 -5.7801 9.4716 49 1 2.9407 -4.7636 7.0325 50 1 1.5885 -3.6030 6.8596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723416639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:43 Heat of formation + Delta-G solvation = -92.061345 kcal Electronic energy + Delta-G solvation = -29673.055252 eV Core-core repulsion = 25507.986481 eV Total energy + Delta-G solvation = -4165.068771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57160 -39.85753 -39.14994 -37.80620 -34.81616 -34.39511 -33.94488 -31.45967 -31.18461 -30.67985 -29.17546 -27.94180 -25.88427 -24.65007 -23.81217 -23.16124 -22.46819 -20.54334 -20.34304 -19.66198 -19.33788 -17.95652 -17.24343 -16.63455 -16.27401 -16.19589 -15.91924 -15.70085 -15.58142 -15.20364 -15.03239 -14.59876 -14.29025 -14.14134 -13.83117 -13.70873 -13.64292 -13.17678 -12.84946 -12.72860 -12.49779 -12.39921 -12.01313 -11.71381 -11.64928 -11.60956 -11.57904 -11.37242 -11.17430 -11.11776 -10.93290 -10.87213 -10.70055 -10.58423 -10.37098 -10.25820 -9.96458 -9.79906 -9.55195 -9.03095 -8.87834 -8.26956 -8.00660 -6.46010 -3.86777 2.67137 3.12683 3.14245 3.24938 3.31931 3.78916 3.82523 3.89400 4.18623 4.29269 4.37693 4.48555 4.61755 4.70255 4.77303 4.83419 4.93422 4.94105 5.03260 5.08551 5.12506 5.16403 5.25618 5.30883 5.36035 5.40250 5.45914 5.51297 5.53281 5.56372 5.61173 5.65268 5.70606 5.72625 5.76622 5.84636 5.90912 5.95326 6.10074 6.12227 6.19337 6.36541 6.53356 6.60427 7.10376 7.51011 7.51655 8.01711 8.23814 8.57149 9.14555 9.49396 10.01544 10.71742 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006741 B = 0.003264 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4152.743739 B = 8575.938395 C =12170.917941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.572 6.572 12 C 0.007 3.993 13 N -0.433 5.433 14 C 0.005 3.995 15 C -0.133 4.133 16 C 0.003 3.997 17 H 0.082 0.918 18 C 0.141 3.859 19 N -0.722 5.722 20 C 0.514 3.486 21 O -0.550 6.550 22 C -0.147 4.147 23 C -0.092 4.092 24 C -0.124 4.124 25 H 0.085 0.915 26 C -0.151 4.151 27 C 0.043 3.957 28 O -0.377 6.377 29 C 0.045 3.955 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -15.373 8.914 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.454 6.454 12 C -0.125 4.125 13 N -0.155 5.155 14 C -0.124 4.124 15 C -0.172 4.172 16 C -0.107 4.107 17 H 0.100 0.900 18 C 0.017 3.983 19 N -0.374 5.374 20 C 0.301 3.699 21 O -0.428 6.428 22 C -0.186 4.186 23 C -0.130 4.130 24 C -0.142 4.142 25 H 0.104 0.896 26 C -0.189 4.189 27 C -0.034 4.034 28 O -0.296 6.296 29 C -0.032 4.032 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.238 0.762 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.872 -15.504 9.691 18.379 hybrid contribution -1.307 1.086 -0.872 1.910 sum -3.179 -14.417 8.819 17.197 Atomic orbital electron populations 1.69612 1.05922 1.28069 1.50759 1.25243 0.95626 0.99685 0.97320 0.85821 0.79766 0.81169 0.77748 1.19203 1.20766 1.20694 1.19737 0.93368 0.82163 1.47481 0.87910 1.41882 1.09085 1.04595 1.64783 1.19606 0.88401 0.84262 0.84789 1.90544 1.13572 1.86841 1.54486 1.22575 0.94771 0.93626 1.01556 1.68865 1.29942 0.99340 1.17352 1.23754 1.03240 0.93801 0.91623 1.23155 1.00354 0.96638 0.97015 1.23785 0.98299 0.93298 0.95310 0.90019 1.21289 1.01208 0.90691 0.85128 1.45994 1.66625 1.19072 1.05699 1.20664 0.77495 0.88499 0.83261 1.90674 1.46094 1.25033 1.81039 1.21749 1.03872 0.98845 0.94183 1.21376 1.02910 0.97487 0.91198 1.22613 1.00720 0.95985 0.94911 0.89615 1.23004 1.00178 1.00333 0.95391 1.23407 0.98252 0.84823 0.96902 1.89134 1.94756 1.27585 1.18090 1.23624 0.98350 0.97555 0.83682 0.91924 0.77623 0.92026 0.90226 0.91373 0.89156 0.88576 0.90437 0.91405 0.90850 0.76244 0.88451 0.88742 0.90818 0.90867 0.90677 0.90208 0.89324 0.92308 0.91837 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.17 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.57 -13.75 5.29 -10.96 -0.06 -13.81 16 10 C 0.44 10.04 7.85 -10.98 -0.09 9.95 16 11 O -0.57 -15.28 16.01 5.55 0.09 -15.19 16 12 C 0.01 0.11 5.05 -4.97 -0.03 0.09 16 13 N -0.43 -6.53 5.39 -237.95 -1.28 -7.81 16 14 C 0.00 0.06 7.71 -7.55 -0.06 0.00 16 15 C -0.13 -1.34 8.00 -26.20 -0.21 -1.55 16 16 C 0.00 0.04 3.23 -71.44 -0.23 -0.19 16 17 H 0.08 0.79 7.91 -51.92 -0.41 0.38 16 18 C 0.14 1.67 5.82 -4.04 -0.02 1.65 16 19 N -0.72 -9.02 5.46 -60.30 -0.33 -9.35 16 20 C 0.51 6.77 7.83 -10.99 -0.09 6.68 16 21 O -0.55 -8.89 15.98 5.55 0.09 -8.80 16 22 C -0.15 -1.49 5.58 -27.89 -0.16 -1.65 16 23 C -0.09 -0.89 3.72 -26.73 -0.10 -0.99 16 24 C -0.12 -1.09 3.11 -89.05 -0.28 -1.37 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 C -0.15 -1.20 6.74 -25.16 -0.17 -1.37 16 27 C 0.04 0.38 7.63 37.93 0.29 0.67 16 28 O -0.38 -4.56 11.65 -35.23 -0.41 -4.97 16 29 C 0.04 0.46 6.51 37.94 0.25 0.71 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 32 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 33 H 0.08 1.10 6.26 -51.93 -0.32 0.78 16 34 H 0.07 0.81 7.42 -51.93 -0.39 0.43 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.10 0.98 7.94 -51.93 -0.41 0.56 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 40 H 0.40 4.88 6.21 -40.82 -0.25 4.63 16 41 H 0.10 0.99 7.63 -51.93 -0.40 0.60 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.58 7.73 -51.92 -0.40 0.18 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.66 7.75 -51.92 -0.40 0.26 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -33.81 404.36 -9.48 -43.29 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -8.25 Total: 13.11 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.13 Total: 4.89 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.95 Total: -54.14 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.23 Total: -28.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.81 -9.48 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723416639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.768 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds