Wall clock time and date at job start Sat Apr 11 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00388 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47121 * 299.99848 * 3 2 1 6 6 H 1.48502 * 109.47105 * 59.99791 * 3 2 1 7 7 C 1.38950 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.47475 * 110.99695 * 265.97352 * 13 12 10 15 15 C 1.53521 * 87.93048 * 221.29471 * 14 13 12 16 16 C 1.47472 * 111.00187 * 169.99871 * 13 12 10 17 17 H 1.09007 * 113.47537 * 23.93571 * 16 13 12 18 18 C 1.53003 * 113.48035 * 253.53045 * 16 13 12 19 19 N 1.46496 * 109.46887 * 54.99690 * 18 16 13 20 20 C 1.34777 * 120.00131 * 179.97438 * 19 18 16 21 21 O 1.21284 * 119.99423 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00354 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.47191 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47195 * 180.02562 * 23 22 20 25 25 H 1.09002 * 110.46164 * 52.38953 * 24 23 22 26 26 C 1.54506 * 110.51607 * 174.99923 * 24 23 22 27 27 C 1.54479 * 104.06658 * 118.64117 * 26 24 23 28 28 O 1.44427 * 104.79979 * 23.97941 * 27 26 24 29 29 C 1.44416 * 105.27861 * 319.49146 * 28 27 26 30 30 H 0.96999 * 119.99752 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9 33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9 34 34 H 1.09003 * 113.47854 * 336.05764 * 14 13 12 35 35 H 1.08998 * 113.48126 * 106.52852 * 14 13 12 36 36 H 1.08998 * 114.16825 * 272.37696 * 15 14 13 37 37 H 1.08995 * 114.34304 * 139.68372 * 15 14 13 38 38 H 1.08995 * 109.47157 * 174.99659 * 18 16 13 39 39 H 1.09001 * 109.46880 * 294.99958 * 18 16 13 40 40 H 0.97002 * 120.00105 * 0.02562 * 19 18 16 41 41 H 1.08998 * 109.47349 * 300.00394 * 22 20 19 42 42 H 1.09001 * 109.47099 * 60.00337 * 22 20 19 43 43 H 1.08995 * 109.46814 * 299.99724 * 23 22 20 44 44 H 1.08994 * 109.47076 * 60.00303 * 23 22 20 45 45 H 1.08997 * 110.51468 * 237.29365 * 26 24 23 46 46 H 1.09010 * 110.50967 * 359.97438 * 26 24 23 47 47 H 1.08997 * 110.37434 * 142.81261 * 27 26 24 48 48 H 1.09000 * 110.37224 * 265.04131 * 27 26 24 49 49 H 1.09009 * 110.37172 * 281.67683 * 29 28 27 50 50 H 1.09002 * 110.37778 * 159.34542 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1981 -5.9796 0.0016 14 6 2.4680 -6.4447 -1.3716 15 6 2.4115 -7.8824 -0.8362 16 6 1.5110 -7.2623 0.2413 17 1 0.4555 -7.2470 -0.0309 18 6 1.7527 -7.8311 1.6409 19 7 1.3798 -6.8318 2.6452 20 6 1.5083 -7.1141 3.9568 21 8 1.9332 -8.1952 4.3056 22 6 1.1242 -6.0864 4.9899 23 6 1.3660 -6.6552 6.3895 24 6 0.9754 -5.6121 7.4384 25 1 -0.0365 -5.2496 7.2570 26 6 1.0914 -6.2045 8.8607 27 6 2.1540 -5.3203 9.5502 28 8 2.1205 -4.0710 8.8263 29 6 1.9816 -4.4399 7.4370 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6166 -4.9209 -0.8886 33 1 0.6172 -4.9205 0.8913 34 1 1.6680 -6.2113 -2.0743 35 1 3.4522 -6.1576 -1.7418 36 1 3.3639 -8.2566 -0.4608 37 1 1.9012 -8.5868 -1.4932 38 1 1.1479 -8.7274 1.7782 39 1 2.8071 -8.0834 1.7535 40 1 1.0396 -5.9673 2.3662 41 1 1.7288 -5.1899 4.8530 42 1 0.0698 -5.8342 4.8770 43 1 0.7615 -7.5518 6.5267 44 1 2.4204 -6.9070 6.5022 45 1 0.1375 -6.1330 9.3832 46 1 1.4266 -7.2409 8.8165 47 1 1.8933 -5.1599 10.5963 48 1 3.1391 -5.7801 9.4716 49 1 2.9407 -4.7636 7.0325 50 1 1.5885 -3.6030 6.8596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723416639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:42 Heat of formation + Delta-G solvation = -118.634691 kcal Electronic energy + Delta-G solvation = -29674.207559 eV Core-core repulsion = 25507.986481 eV Total energy + Delta-G solvation = -4166.221077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63083 -40.75909 -40.12686 -39.55326 -35.95209 -35.68433 -35.36870 -33.31326 -32.19121 -31.80383 -30.02620 -28.83525 -27.53699 -25.51169 -25.35991 -24.01872 -23.27597 -21.47924 -21.16089 -21.06970 -20.58937 -19.90503 -18.20258 -17.73324 -17.44810 -17.23266 -16.95642 -16.75280 -16.57486 -16.43300 -16.24125 -16.08410 -15.59661 -15.38112 -15.15109 -14.81917 -14.63821 -14.28537 -14.06540 -13.82802 -13.57011 -13.53564 -13.25470 -13.03928 -12.91890 -12.59728 -12.47600 -12.42811 -12.38949 -12.33109 -12.14079 -11.96356 -11.89908 -11.63444 -11.61749 -11.48979 -11.41639 -10.83946 -10.77564 -10.37076 -10.05016 -9.99140 -9.70865 -8.46248 -5.93982 1.35938 1.42054 1.55016 1.64845 2.06380 2.18772 2.29440 2.81444 3.05048 3.20004 3.35891 3.55525 3.57997 3.69349 3.79851 3.81458 4.00932 4.05066 4.13876 4.16403 4.23881 4.26905 4.32711 4.34354 4.40651 4.43190 4.51101 4.58348 4.67514 4.69871 4.78998 4.83315 4.83939 4.88592 4.90766 5.00450 5.03991 5.04741 5.19784 5.21821 5.31400 5.35455 5.42374 5.53521 5.84634 5.93680 6.12198 6.51132 6.62431 7.15272 7.22963 7.58654 8.15765 8.71084 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006741 B = 0.003264 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4152.743739 B = 8575.938395 C =12170.917941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.986 3.014 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.074 0.926 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.619 6.619 12 C 0.021 3.979 13 N -0.470 5.470 14 C -0.004 4.004 15 C -0.115 4.115 16 C 0.016 3.984 17 H 0.110 0.890 18 C 0.140 3.860 19 N -0.720 5.720 20 C 0.509 3.491 21 O -0.584 6.584 22 C -0.143 4.143 23 C -0.083 4.083 24 C -0.116 4.116 25 H 0.096 0.904 26 C -0.148 4.148 27 C 0.036 3.964 28 O -0.404 6.404 29 C 0.039 3.961 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.404 0.596 41 H 0.096 0.904 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 -16.169 8.912 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.209 4.209 3 Si 0.811 3.189 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.092 0.908 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.505 6.505 12 C -0.111 4.111 13 N -0.193 5.193 14 C -0.133 4.133 15 C -0.153 4.153 16 C -0.094 4.094 17 H 0.127 0.873 18 C 0.016 3.984 19 N -0.371 5.371 20 C 0.297 3.703 21 O -0.465 6.465 22 C -0.183 4.183 23 C -0.121 4.121 24 C -0.135 4.135 25 H 0.115 0.885 26 C -0.185 4.185 27 C -0.041 4.041 28 O -0.323 6.323 29 C -0.037 4.037 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.240 0.760 41 H 0.114 0.886 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.122 0.878 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.856 -16.305 9.676 19.348 hybrid contribution -0.642 1.292 -0.881 1.691 sum -4.498 -15.013 8.795 17.971 Atomic orbital electron populations 1.69656 1.06603 1.29116 1.50514 1.25919 0.96488 1.02055 0.96438 0.84966 0.78031 0.77601 0.78347 1.20113 1.19637 1.19613 1.19618 0.92500 0.84121 1.49741 0.90773 1.41927 1.09247 1.04583 1.65445 1.20771 0.88208 0.85864 0.82164 1.90512 1.16073 1.87883 1.55983 1.22452 0.94411 0.90315 1.03906 1.68816 1.31014 1.00523 1.18911 1.23847 1.02403 0.95887 0.91138 1.23096 1.00283 0.95412 0.96489 1.23838 0.99698 0.90854 0.95000 0.87272 1.21340 1.00321 0.91220 0.85538 1.46048 1.66099 1.19231 1.05770 1.21156 0.76780 0.88508 0.83838 1.90655 1.47722 1.26593 1.81539 1.21794 1.05241 0.97765 0.93501 1.21280 1.01916 0.97713 0.91221 1.22554 1.00633 0.95042 0.95239 0.88542 1.23008 1.00490 1.00397 0.94620 1.23608 0.98863 0.84033 0.97565 1.89101 1.94924 1.29440 1.18875 1.23684 0.98586 0.98204 0.83255 0.91350 0.76953 0.89579 0.87648 0.89813 0.91817 0.89126 0.87041 0.89943 0.92871 0.75982 0.88599 0.86335 0.90736 0.92465 0.89432 0.89467 0.87849 0.92124 0.92528 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.01 13.05 21.66 0.28 -47.73 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.33 -18.36 9.68 84.04 0.81 -17.54 16 8 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 10 C 0.44 20.13 7.85 87.66 0.69 20.82 16 11 O -0.62 -34.10 16.01 -3.06 -0.05 -34.15 16 12 C 0.02 0.64 5.05 85.56 0.43 1.07 16 13 N -0.47 -13.54 5.39 -906.75 -4.89 -18.43 16 14 C 0.00 -0.10 7.71 83.58 0.64 0.55 16 15 C -0.11 -2.00 8.00 30.94 0.25 -1.76 16 16 C 0.02 0.30 3.23 42.19 0.14 0.44 16 17 H 0.11 1.61 7.91 -2.38 -0.02 1.59 16 18 C 0.14 3.08 5.82 86.38 0.50 3.58 16 19 N -0.72 -17.00 5.46 -463.07 -2.53 -19.53 16 20 C 0.51 13.00 7.83 87.66 0.69 13.68 16 21 O -0.58 -18.72 15.98 -3.04 -0.05 -18.77 16 22 C -0.14 -2.77 5.58 29.85 0.17 -2.60 16 23 C -0.08 -1.55 3.72 30.59 0.11 -1.43 16 24 C -0.12 -1.92 3.11 -9.78 -0.03 -1.95 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 C -0.15 -2.12 6.74 31.61 0.21 -1.91 16 27 C 0.04 0.60 7.63 72.48 0.55 1.16 16 28 O -0.40 -9.67 11.65 -148.98 -1.74 -11.40 16 29 C 0.04 0.81 6.51 72.49 0.47 1.29 16 30 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 31 H 0.40 18.20 7.90 -92.71 -0.73 17.46 16 32 H 0.09 2.23 7.30 -2.39 -0.02 2.21 16 33 H 0.11 2.65 6.26 -2.39 -0.01 2.63 16 34 H 0.08 1.79 7.42 -2.39 -0.02 1.77 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 1.70 7.94 -2.39 -0.02 1.68 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.39 7.88 -2.39 -0.02 1.37 16 40 H 0.40 9.10 6.21 -92.71 -0.58 8.52 16 41 H 0.10 1.91 7.63 -2.39 -0.02 1.89 16 42 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.06 1.24 7.92 -2.39 -0.02 1.23 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 1.13 7.73 -2.38 -0.02 1.11 16 47 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.22 7.75 -2.38 -0.02 1.20 16 50 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.18 404.36 -2.81 -77.99 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.35 Total: 41.94 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.11 Total: 15.39 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -8.76 Total: -115.46 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -1.83 Total: -64.32 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.18 -2.81 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723416639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.647 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds