Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99912 * 3 2 1 5 5 H 1.48499 * 109.47311 * 29.99909 * 3 2 1 6 6 H 1.48503 * 109.47174 * 150.00313 * 3 2 1 7 7 C 1.38950 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99804 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00252 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99549 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00228 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47363 * 184.47044 * 12 10 9 14 14 C 1.46902 * 110.99595 * 283.95840 * 13 12 10 15 15 C 1.53004 * 109.46642 * 169.99872 * 14 13 12 16 16 C 1.53003 * 109.47002 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47076 * 180.02562 * 16 15 14 18 18 C 1.34775 * 119.99996 * 180.02562 * 17 16 15 19 19 O 1.21281 * 119.99715 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00006 * 179.97438 * 18 17 16 21 21 H 1.09000 * 110.33078 * 57.24893 * 20 18 17 22 22 C 1.54472 * 110.37073 * 294.99304 * 20 18 17 23 23 C 1.54508 * 104.06129 * 217.18897 * 22 20 18 24 24 C 1.54476 * 104.06351 * 0.02562 * 23 22 20 25 25 O 1.44420 * 104.80394 * 23.97443 * 24 23 22 26 26 C 1.46901 * 111.00052 * 160.00292 * 13 12 10 27 27 C 1.52996 * 117.50091 * 11.74152 * 26 13 12 28 28 C 1.53000 * 117.49532 * 303.11535 * 26 13 12 29 29 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00003 * 0.02562 * 9 7 2 31 31 H 1.09008 * 109.47464 * 64.47227 * 12 10 9 32 32 H 1.08998 * 109.47613 * 304.46970 * 12 10 9 33 33 H 1.08999 * 109.47616 * 49.99910 * 14 13 12 34 34 H 1.08995 * 109.47035 * 289.99323 * 14 13 12 35 35 H 1.09004 * 109.47077 * 299.99700 * 15 14 13 36 36 H 1.09000 * 109.47530 * 60.00002 * 15 14 13 37 37 H 1.08995 * 109.46860 * 299.99564 * 16 15 14 38 38 H 1.09000 * 109.46971 * 59.99667 * 16 15 14 39 39 H 0.96995 * 120.00102 * 359.97438 * 17 16 15 40 40 H 1.08996 * 110.51660 * 335.83819 * 22 20 18 41 41 H 1.09006 * 110.51023 * 98.41281 * 22 20 18 42 42 H 1.09006 * 110.50772 * 118.64753 * 23 22 20 43 43 H 1.09007 * 110.51053 * 241.35365 * 23 22 20 44 44 H 1.08997 * 110.37206 * 142.81212 * 24 23 22 45 45 H 1.09008 * 110.36750 * 265.03392 * 24 23 22 46 46 H 1.09002 * 115.54765 * 157.45027 * 26 13 12 47 47 H 1.08997 * 117.49761 * 359.97438 * 27 26 13 48 48 H 1.08997 * 117.50048 * 145.02372 * 27 26 13 49 49 H 1.09004 * 117.49665 * 214.97658 * 28 26 13 50 50 H 1.08994 * 117.50494 * 0.02562 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1946 -5.9774 0.1070 14 6 2.8768 -6.2132 -1.1725 15 6 4.0258 -7.2016 -0.9631 16 6 4.7360 -7.4477 -2.2958 17 7 5.8359 -8.3946 -2.0954 18 6 6.6070 -8.7622 -3.1379 19 8 6.3900 -8.3094 -4.2419 20 6 7.7387 -9.7357 -2.9317 21 1 7.3645 -10.6667 -2.5059 22 6 8.8174 -9.1196 -2.0136 23 6 10.1502 -9.6305 -2.6051 24 6 9.7190 -10.4943 -3.8110 25 8 8.4181 -9.9881 -4.1811 26 6 1.5250 -7.1968 0.5792 27 6 -0.0047 -7.1982 0.6043 28 6 0.7819 -7.1225 1.9145 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6788 -4.9559 -0.9287 32 1 0.5580 -4.8870 0.8458 33 1 3.2724 -5.2713 -1.5524 34 1 2.1688 -6.6261 -1.8910 35 1 4.7338 -6.7887 -0.2445 36 1 3.6302 -8.1436 -0.5833 37 1 4.0278 -7.8608 -3.0140 38 1 5.1316 -6.5059 -2.6760 39 1 6.0096 -8.7564 -1.2124 40 1 8.7750 -8.0312 -2.0515 41 1 8.6926 -9.4703 -0.9890 42 1 10.7667 -8.7945 -2.9355 43 1 10.6858 -10.2356 -1.8734 44 1 10.4220 -10.3732 -4.6351 45 1 9.6517 -11.5432 -3.5217 46 1 2.0255 -8.1333 0.3331 47 1 -0.5144 -6.2942 0.2709 48 1 -0.5110 -8.1357 0.3747 49 1 0.7931 -8.0105 2.5467 50 1 0.7894 -6.1690 2.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731326681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = -82.413371 kcal Electronic energy + Delta-G solvation = -29149.474322 eV Core-core repulsion = 24984.823919 eV Total energy + Delta-G solvation = -4164.650403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53231 -39.36035 -38.65172 -37.49011 -35.76608 -34.15480 -33.61077 -32.55942 -31.48159 -31.11715 -29.82153 -27.36815 -25.19039 -24.26988 -23.56192 -22.32122 -21.95496 -21.93454 -20.68577 -20.08062 -18.83718 -17.83883 -17.79451 -17.02265 -16.83948 -16.36640 -15.93912 -15.49884 -15.32829 -15.03396 -14.93709 -14.61569 -14.28993 -14.08775 -14.03011 -13.79438 -13.60111 -13.22530 -12.92224 -12.52641 -12.27891 -12.19888 -12.16603 -11.85536 -11.77567 -11.51471 -11.45680 -11.36717 -11.22467 -11.21159 -11.07443 -10.90963 -10.43122 -10.38812 -10.38057 -10.25170 -10.20200 -9.81809 -9.47481 -9.23784 -8.41160 -7.95201 -7.78554 -6.40351 -3.80998 2.39983 2.64613 3.18811 3.27405 3.33022 3.63696 3.73218 3.91818 4.04243 4.07310 4.24337 4.29078 4.41239 4.60127 4.68880 4.82646 4.85449 4.89367 4.92266 5.02746 5.08113 5.11138 5.18748 5.24407 5.24494 5.34865 5.35483 5.48133 5.53487 5.56949 5.61111 5.68318 5.70625 5.77797 5.90462 5.96450 6.02764 6.16343 6.18509 6.24946 6.28034 6.31149 6.36128 7.20926 7.27017 7.35038 7.56508 8.02306 8.07533 8.63153 9.19674 9.55934 10.07758 10.77431 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.002148 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.872924 B =13032.333577 C =14920.843060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.576 6.576 12 C 0.041 3.959 13 N -0.481 5.481 14 C 0.064 3.936 15 C -0.122 4.122 16 C 0.120 3.880 17 N -0.725 5.725 18 C 0.515 3.485 19 O -0.518 6.518 20 C 0.057 3.943 21 H 0.095 0.905 22 C -0.147 4.147 23 C -0.154 4.154 24 C 0.041 3.959 25 O -0.345 6.345 26 C 0.023 3.977 27 C -0.226 4.226 28 C -0.174 4.174 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.119 0.881 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -23.026 -0.099 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.090 4.090 13 N -0.202 5.202 14 C -0.064 4.064 15 C -0.160 4.160 16 C -0.003 4.003 17 N -0.378 5.378 18 C 0.300 3.700 19 O -0.393 6.393 20 C -0.004 4.004 21 H 0.112 0.888 22 C -0.185 4.185 23 C -0.192 4.192 24 C -0.036 4.036 25 O -0.263 6.263 26 C -0.087 4.087 27 C -0.266 4.266 28 C -0.212 4.212 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.234 0.766 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.118 0.882 48 H 0.109 0.891 49 H 0.113 0.887 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.012 -22.329 -0.814 24.910 hybrid contribution -0.804 0.423 0.188 0.928 sum 10.208 -21.906 -0.626 24.175 Atomic orbital electron populations 1.69609 1.05915 1.28107 1.50746 1.25253 0.95635 0.99693 0.97421 0.85869 0.79236 0.80876 0.78378 1.20431 1.20956 1.19434 1.19680 0.93329 0.82190 1.47481 0.87942 1.41858 1.09147 1.04579 1.64656 1.19744 0.88437 0.84474 0.84420 1.90506 1.13617 1.86959 1.54908 1.21986 0.94330 0.91200 1.01513 1.61361 1.27686 1.02330 1.28860 1.21994 0.94553 1.00507 0.89303 1.21744 0.98421 0.99471 0.96376 1.21370 0.87991 0.92930 0.98020 1.45894 1.33160 1.47490 1.11296 1.20182 0.82733 0.82270 0.84844 1.90752 1.69833 1.54466 1.24230 1.22870 0.93094 0.97766 0.86667 0.88757 1.22939 0.93560 1.02546 0.99415 1.22947 0.97581 1.00652 0.97990 1.23505 0.85139 0.97182 0.97784 1.89298 1.26883 1.84960 1.25118 1.22758 0.90711 0.94433 1.00793 1.23617 0.96299 1.03485 1.03148 1.23070 1.03749 1.03449 0.90892 0.91914 0.77569 0.92856 0.89160 0.88616 0.95093 0.89896 0.91773 0.91471 0.90826 0.76554 0.89842 0.89386 0.90193 0.90029 0.88559 0.91914 0.86343 0.88193 0.89114 0.88715 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.24 5.29 -10.97 -0.06 -14.30 16 10 C 0.44 10.34 7.52 -10.99 -0.08 10.25 16 11 O -0.58 -15.25 14.62 5.55 0.08 -15.16 16 12 C 0.04 0.71 4.12 -4.98 -0.02 0.69 16 13 N -0.48 -7.56 4.31 -228.08 -0.98 -8.54 16 14 C 0.06 0.94 4.56 -3.82 -0.02 0.92 16 15 C -0.12 -1.38 5.32 -26.73 -0.14 -1.52 16 16 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 17 N -0.72 -7.02 5.54 -60.29 -0.33 -7.36 16 18 C 0.52 6.27 7.08 -10.99 -0.08 6.19 16 19 O -0.52 -8.96 16.55 -13.67 -0.23 -9.19 16 20 C 0.06 0.51 3.71 -27.11 -0.10 0.41 16 21 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 22 C -0.15 -0.96 6.61 -25.17 -0.17 -1.13 16 23 C -0.15 -0.87 7.09 -25.17 -0.18 -1.05 16 24 C 0.04 0.28 7.63 37.93 0.29 0.57 16 25 O -0.34 -3.96 10.91 -54.46 -0.59 -4.55 16 26 C 0.02 0.28 5.83 -67.71 -0.39 -0.12 16 27 C -0.23 -2.55 9.57 -26.73 -0.26 -2.80 16 28 C -0.17 -2.02 9.90 -26.73 -0.26 -2.28 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 31 H 0.05 0.87 7.82 -51.92 -0.41 0.46 16 32 H 0.09 1.47 5.52 -51.93 -0.29 1.18 16 33 H 0.10 1.72 6.59 -51.93 -0.34 1.38 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.60 6.40 -51.93 -0.33 0.27 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 2.59 8.47 -40.82 -0.35 2.24 16 40 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 46 H 0.12 1.23 6.34 -51.93 -0.33 0.90 16 47 H 0.10 1.21 6.06 -51.93 -0.31 0.89 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.10 1.30 7.41 -51.93 -0.38 0.92 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -35.17 404.47 -10.05 -45.22 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -8.06 Total: 11.93 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.68 Total: 3.58 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.65 Total: -54.04 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.74 Total: -28.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.17 -10.05 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731326681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.197 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds