Wall clock time and date at job start Sat Apr 11 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99912 * 3 2 1 5 5 H 1.48499 * 109.47311 * 29.99909 * 3 2 1 6 6 H 1.48503 * 109.47174 * 150.00313 * 3 2 1 7 7 C 1.38950 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99804 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00252 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99549 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00228 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47363 * 184.47044 * 12 10 9 14 14 C 1.46902 * 110.99595 * 283.95840 * 13 12 10 15 15 C 1.53004 * 109.46642 * 169.99872 * 14 13 12 16 16 C 1.53003 * 109.47002 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47076 * 180.02562 * 16 15 14 18 18 C 1.34775 * 119.99996 * 180.02562 * 17 16 15 19 19 O 1.21281 * 119.99715 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00006 * 179.97438 * 18 17 16 21 21 H 1.09000 * 110.33078 * 57.24893 * 20 18 17 22 22 C 1.54472 * 110.37073 * 294.99304 * 20 18 17 23 23 C 1.54508 * 104.06129 * 217.18897 * 22 20 18 24 24 C 1.54476 * 104.06351 * 0.02562 * 23 22 20 25 25 O 1.44420 * 104.80394 * 23.97443 * 24 23 22 26 26 C 1.46901 * 111.00052 * 160.00292 * 13 12 10 27 27 C 1.52996 * 117.50091 * 11.74152 * 26 13 12 28 28 C 1.53000 * 117.49532 * 303.11535 * 26 13 12 29 29 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00003 * 0.02562 * 9 7 2 31 31 H 1.09008 * 109.47464 * 64.47227 * 12 10 9 32 32 H 1.08998 * 109.47613 * 304.46970 * 12 10 9 33 33 H 1.08999 * 109.47616 * 49.99910 * 14 13 12 34 34 H 1.08995 * 109.47035 * 289.99323 * 14 13 12 35 35 H 1.09004 * 109.47077 * 299.99700 * 15 14 13 36 36 H 1.09000 * 109.47530 * 60.00002 * 15 14 13 37 37 H 1.08995 * 109.46860 * 299.99564 * 16 15 14 38 38 H 1.09000 * 109.46971 * 59.99667 * 16 15 14 39 39 H 0.96995 * 120.00102 * 359.97438 * 17 16 15 40 40 H 1.08996 * 110.51660 * 335.83819 * 22 20 18 41 41 H 1.09006 * 110.51023 * 98.41281 * 22 20 18 42 42 H 1.09006 * 110.50772 * 118.64753 * 23 22 20 43 43 H 1.09007 * 110.51053 * 241.35365 * 23 22 20 44 44 H 1.08997 * 110.37206 * 142.81212 * 24 23 22 45 45 H 1.09008 * 110.36750 * 265.03392 * 24 23 22 46 46 H 1.09002 * 115.54765 * 157.45027 * 26 13 12 47 47 H 1.08997 * 117.49761 * 359.97438 * 27 26 13 48 48 H 1.08997 * 117.50048 * 145.02372 * 27 26 13 49 49 H 1.09004 * 117.49665 * 214.97658 * 28 26 13 50 50 H 1.08994 * 117.50494 * 0.02562 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1946 -5.9774 0.1070 14 6 2.8768 -6.2132 -1.1725 15 6 4.0258 -7.2016 -0.9631 16 6 4.7360 -7.4477 -2.2958 17 7 5.8359 -8.3946 -2.0954 18 6 6.6070 -8.7622 -3.1379 19 8 6.3900 -8.3094 -4.2419 20 6 7.7387 -9.7357 -2.9317 21 1 7.3645 -10.6667 -2.5059 22 6 8.8174 -9.1196 -2.0136 23 6 10.1502 -9.6305 -2.6051 24 6 9.7190 -10.4943 -3.8110 25 8 8.4181 -9.9881 -4.1811 26 6 1.5250 -7.1968 0.5792 27 6 -0.0047 -7.1982 0.6043 28 6 0.7819 -7.1225 1.9145 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6788 -4.9559 -0.9287 32 1 0.5580 -4.8870 0.8458 33 1 3.2724 -5.2713 -1.5524 34 1 2.1688 -6.6261 -1.8910 35 1 4.7338 -6.7887 -0.2445 36 1 3.6302 -8.1436 -0.5833 37 1 4.0278 -7.8608 -3.0140 38 1 5.1316 -6.5059 -2.6760 39 1 6.0096 -8.7564 -1.2124 40 1 8.7750 -8.0312 -2.0515 41 1 8.6926 -9.4703 -0.9890 42 1 10.7667 -8.7945 -2.9355 43 1 10.6858 -10.2356 -1.8734 44 1 10.4220 -10.3732 -4.6351 45 1 9.6517 -11.5432 -3.5217 46 1 2.0255 -8.1333 0.3331 47 1 -0.5144 -6.2942 0.2709 48 1 -0.5110 -8.1357 0.3747 49 1 0.7931 -8.0105 2.5467 50 1 0.7894 -6.1690 2.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731326681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:25 Heat of formation + Delta-G solvation = -109.097990 kcal Electronic energy + Delta-G solvation = -29150.631454 eV Core-core repulsion = 24984.823919 eV Total energy + Delta-G solvation = -4165.807535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34847 -40.72235 -39.50317 -39.08164 -36.78402 -35.97913 -34.86284 -33.33454 -33.18485 -32.35043 -30.59856 -28.76199 -26.64007 -25.65240 -24.37635 -23.23414 -22.95416 -22.48570 -21.72608 -21.34790 -20.39919 -19.72119 -18.61201 -18.31699 -17.66372 -17.32466 -16.89050 -16.78333 -16.44489 -16.35902 -16.01095 -15.77284 -15.66538 -15.60373 -15.23028 -14.73456 -14.54324 -14.40733 -14.24239 -13.78377 -13.60228 -13.44708 -13.16944 -12.91787 -12.78135 -12.72492 -12.48600 -12.43526 -12.36569 -12.30500 -12.26202 -12.12534 -12.03709 -11.71251 -11.55067 -11.41383 -11.16466 -11.07321 -10.69601 -10.26050 -10.20295 -10.00030 -9.01215 -8.46439 -5.94850 1.36906 1.40367 1.47625 1.53008 1.82646 2.05833 2.27165 2.61118 3.03835 3.06543 3.19867 3.42332 3.47758 3.67446 3.83460 3.91288 3.95061 4.02376 4.08316 4.09912 4.18159 4.20316 4.21737 4.30218 4.36065 4.37735 4.49357 4.53559 4.67057 4.67617 4.79670 4.81244 4.84576 4.92779 4.96505 5.00362 5.12142 5.12434 5.15124 5.24320 5.30748 5.35042 5.40746 5.73565 5.87945 6.07747 6.24893 6.48052 6.60822 7.13395 7.15740 7.56970 8.12976 8.70969 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.002148 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.872924 B =13032.333577 C =14920.843060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.441 3.559 11 O -0.612 6.612 12 C 0.056 3.944 13 N -0.500 5.500 14 C 0.065 3.935 15 C -0.103 4.103 16 C 0.127 3.873 17 N -0.706 5.706 18 C 0.509 3.491 19 O -0.581 6.581 20 C 0.059 3.941 21 H 0.130 0.870 22 C -0.144 4.144 23 C -0.150 4.150 24 C 0.034 3.966 25 O -0.389 6.389 26 C 0.014 3.986 27 C -0.218 4.218 28 C -0.174 4.174 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.420 0.580 40 H 0.061 0.939 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.146 0.854 47 H 0.088 0.912 48 H 0.115 0.885 49 H 0.120 0.880 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.211 -25.513 1.464 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.498 6.498 12 C -0.075 4.075 13 N -0.222 5.222 14 C -0.063 4.063 15 C -0.141 4.141 16 C 0.002 3.998 17 N -0.360 5.360 18 C 0.295 3.705 19 O -0.460 6.460 20 C -0.002 4.002 21 H 0.147 0.853 22 C -0.182 4.182 23 C -0.188 4.188 24 C -0.042 4.042 25 O -0.308 6.308 26 C -0.095 4.095 27 C -0.257 4.257 28 C -0.212 4.212 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.258 0.742 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.164 0.836 47 H 0.106 0.894 48 H 0.133 0.867 49 H 0.139 0.861 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.020 -24.850 0.803 27.196 hybrid contribution -0.807 1.148 -0.291 1.433 sum 10.212 -23.702 0.512 25.814 Atomic orbital electron populations 1.69670 1.06773 1.29202 1.50556 1.26024 0.96563 1.02361 0.96463 0.84950 0.77922 0.77024 0.78577 1.19795 1.19466 1.19780 1.19627 0.92619 0.83990 1.49722 0.90395 1.41935 1.09236 1.04730 1.65527 1.20814 0.88370 0.85888 0.82091 1.90476 1.15568 1.87828 1.55881 1.21787 0.94009 0.88884 1.02800 1.61289 1.28054 1.03454 1.29420 1.21923 0.95788 0.99270 0.89334 1.21554 0.96940 0.99919 0.95654 1.21165 0.88393 0.92063 0.98158 1.45712 1.32033 1.46361 1.11936 1.20962 0.83246 0.82109 0.84136 1.90719 1.71633 1.56932 1.26703 1.23064 0.92339 0.98221 0.86564 0.85287 1.22993 0.93189 1.01223 1.00762 1.22967 0.97134 1.00598 0.98078 1.23751 0.83496 0.98504 0.98483 1.89259 1.28961 1.85575 1.27049 1.22936 0.91608 0.93574 1.01387 1.23651 0.95363 1.04183 1.02460 1.23133 1.03476 1.03544 0.91013 0.91364 0.77173 0.91427 0.87686 0.93068 0.93644 0.91012 0.88398 0.91606 0.93896 0.74236 0.91978 0.85944 0.91036 0.87173 0.88425 0.89623 0.83632 0.89355 0.86693 0.86137 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -30.05 5.29 -307.00 -1.62 -31.68 16 10 C 0.44 21.24 7.52 87.65 0.66 21.90 16 11 O -0.61 -33.87 14.62 -3.06 -0.04 -33.92 16 12 C 0.06 1.96 4.12 85.55 0.35 2.32 16 13 N -0.50 -15.29 4.31 -875.51 -3.78 -19.07 16 14 C 0.06 1.89 4.56 86.30 0.39 2.28 16 15 C -0.10 -2.21 5.32 30.60 0.16 -2.05 16 16 C 0.13 2.95 5.67 86.38 0.49 3.44 16 17 N -0.71 -13.06 5.54 -463.05 -2.56 -15.62 16 18 C 0.51 12.41 7.08 87.66 0.62 13.03 16 19 O -0.58 -21.12 16.55 15.35 0.25 -20.87 16 20 C 0.06 0.97 3.71 30.35 0.11 1.08 16 21 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 22 C -0.14 -1.60 6.61 31.61 0.21 -1.39 16 23 C -0.15 -1.39 7.09 31.61 0.22 -1.16 16 24 C 0.03 0.41 7.63 72.48 0.55 0.97 16 25 O -0.39 -8.83 10.91 -130.60 -1.42 -10.26 16 26 C 0.01 0.29 5.83 44.91 0.26 0.56 16 27 C -0.22 -4.23 9.57 30.60 0.29 -3.93 16 28 C -0.17 -3.55 9.90 30.60 0.30 -3.25 16 29 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.39 19.60 7.90 -92.71 -0.73 18.87 16 31 H 0.07 2.17 7.82 -2.38 -0.02 2.15 16 32 H 0.11 3.35 5.52 -2.39 -0.01 3.34 16 33 H 0.05 1.94 6.59 -2.39 -0.02 1.93 16 34 H 0.05 1.17 8.12 -2.39 -0.02 1.15 16 35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.10 1.47 6.40 -2.39 -0.02 1.46 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.42 4.39 8.47 -92.71 -0.79 3.61 16 40 H 0.06 0.96 7.86 -2.39 -0.02 0.94 16 41 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 43 H 0.11 0.40 8.14 -2.38 -0.02 0.39 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.15 2.35 6.34 -2.39 -0.02 2.34 16 47 H 0.09 1.94 6.06 -2.39 -0.01 1.93 16 48 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.08 1.93 7.41 -2.39 -0.02 1.91 16 Total: -1.00 -81.51 404.47 -1.50 -83.02 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.55 Total: 37.46 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 5.92 Total: 15.26 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -7.68 Total: -116.41 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: -1.22 Total: -65.04 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -81.51 -1.50 -83.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731326681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.081 kcal (2) G-P(sol) polarization free energy of solvation -81.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds