Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48506 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47145 * 299.99322 * 3 2 1 6 6 H 1.48501 * 109.47784 * 59.99445 * 3 2 1 7 7 C 1.38942 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00409 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00208 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00178 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00248 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47315 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00258 * 180.23046 * 13 12 10 15 15 H 1.08998 * 109.47296 * 327.47059 * 14 13 12 16 16 C 1.53010 * 109.47148 * 207.47253 * 14 13 12 17 17 N 1.46496 * 109.46812 * 54.99976 * 16 14 13 18 18 C 1.34778 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00155 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47059 * 179.97438 * 20 18 17 22 22 H 1.08998 * 110.80870 * 302.82713 * 21 20 18 23 23 C 1.54811 * 110.90808 * 179.15941 * 21 20 18 24 24 C 1.54097 * 104.18769 * 220.92366 * 23 21 20 25 25 O 1.43739 * 107.29578 * 357.96794 * 24 23 21 26 26 C 1.44378 * 106.97427 * 26.51829 * 25 24 23 27 27 C 1.52998 * 109.47186 * 87.47019 * 14 13 12 28 28 C 1.52993 * 117.50059 * 252.40956 * 27 14 13 29 29 C 1.53003 * 117.49867 * 183.74379 * 27 14 13 30 30 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99791 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47489 * 59.99936 * 12 10 9 33 33 H 1.09002 * 109.47542 * 299.99879 * 12 10 9 34 34 H 1.00895 * 111.00167 * 304.18986 * 13 12 10 35 35 H 1.09001 * 109.46623 * 295.00087 * 16 14 13 36 36 H 1.08999 * 109.47118 * 174.99981 * 16 14 13 37 37 H 0.96996 * 120.00374 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.47180 * 60.00412 * 20 18 17 39 39 H 1.08999 * 109.47124 * 299.99961 * 20 18 17 40 40 H 1.09009 * 110.48557 * 339.59553 * 23 21 20 41 41 H 1.08997 * 110.48795 * 102.11327 * 23 21 20 42 42 H 1.09003 * 109.88211 * 117.39391 * 24 23 21 43 43 H 1.09003 * 109.87694 * 238.54301 * 24 23 21 44 44 H 1.09004 * 110.61822 * 201.44135 * 26 25 24 45 45 H 1.08992 * 110.62446 * 78.43858 * 26 25 24 46 46 H 1.08997 * 115.54529 * 38.08037 * 27 14 13 47 47 H 1.09003 * 117.49681 * 359.97438 * 28 27 14 48 48 H 1.08998 * 117.50439 * 145.02387 * 28 27 14 49 49 H 1.08990 * 117.49895 * 214.97750 * 29 27 14 50 50 H 1.08993 * 117.49923 * 359.97438 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8628 0.0011 13 7 2.1985 -5.9794 0.0016 14 6 1.4983 -7.2708 -0.0033 15 1 0.5617 -7.1784 0.5466 16 6 2.3782 -8.3307 0.6626 17 7 2.7588 -7.8776 2.0027 18 6 3.5390 -8.6542 2.7803 19 8 3.9257 -9.7284 2.3707 20 6 3.9310 -8.1880 4.1587 21 6 4.8108 -9.2480 4.8246 22 1 4.2957 -10.2076 4.8674 23 6 5.2508 -8.7928 6.2374 24 6 6.7268 -9.2255 6.3310 25 8 7.0524 -9.9018 5.1052 26 6 6.1686 -9.3814 4.0890 27 6 1.2036 -7.6856 -1.4462 28 6 -0.2481 -7.6043 -1.9222 29 6 0.3972 -8.9679 -1.6619 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9208 -0.8886 33 1 0.6176 -4.9205 0.8914 34 1 2.8358 -5.9107 -0.7776 35 1 3.2753 -8.4868 0.0634 36 1 1.8248 -9.2667 0.7389 37 1 2.4498 -7.0185 2.3302 38 1 3.0342 -8.0320 4.7582 39 1 4.4843 -7.2520 4.0820 40 1 5.1637 -7.7105 6.3338 41 1 4.6555 -9.2922 7.0017 42 1 7.3632 -8.3487 6.4509 43 1 6.8618 -9.9021 7.1749 44 1 6.0870 -10.0805 3.2566 45 1 6.5142 -8.4079 3.7415 46 1 1.9845 -7.4543 -2.1706 47 1 -0.9934 -7.2556 -1.2072 48 1 -0.4225 -7.3200 -2.9599 49 1 0.6472 -9.5798 -2.5285 50 1 0.0770 -9.5161 -0.7760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731400413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -103.172301 kcal Electronic energy + Delta-G solvation = -29356.461820 eV Core-core repulsion = 25190.911242 eV Total energy + Delta-G solvation = -4165.550578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23017 -39.26129 -38.60221 -37.86796 -35.19912 -34.16867 -33.68371 -33.54272 -31.28650 -30.29875 -29.40607 -27.23241 -25.92909 -24.11279 -23.15366 -22.77712 -22.42198 -20.96661 -20.75720 -19.99623 -19.27811 -17.95839 -17.38071 -16.65085 -16.41965 -16.16609 -15.86939 -15.57008 -15.48797 -15.16202 -14.91046 -14.59501 -14.35677 -14.09108 -13.99555 -13.73332 -13.57164 -13.28118 -12.99292 -12.53071 -12.47720 -12.06543 -12.00941 -11.86848 -11.75216 -11.59749 -11.55358 -11.53422 -11.38601 -11.11211 -11.04334 -10.85072 -10.67135 -10.38831 -10.29295 -10.22515 -9.82564 -9.78806 -9.57588 -8.98390 -8.55933 -8.17641 -8.02076 -6.47460 -3.88401 2.64957 3.12078 3.13497 3.23321 3.30221 3.60115 3.82457 3.84248 3.98443 4.22197 4.26720 4.48358 4.56311 4.66585 4.69758 4.81175 4.83494 4.86848 5.02380 5.05506 5.10805 5.14374 5.20726 5.24234 5.32755 5.38269 5.44181 5.46643 5.50858 5.57502 5.64102 5.68983 5.71453 5.74617 5.81199 5.89857 5.93005 5.93547 5.99772 6.01550 6.20096 6.48073 6.71511 7.06873 7.50059 7.51363 7.58494 8.00531 8.25723 8.54833 9.12354 9.48190 9.99145 10.70214 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008407 B = 0.002569 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.822710 B =10895.872172 C =13692.858588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.104 3.896 15 H 0.083 0.917 16 C 0.138 3.862 17 N -0.712 5.712 18 C 0.511 3.489 19 O -0.550 6.550 20 C -0.134 4.134 21 C -0.103 4.103 22 H 0.092 0.908 23 C -0.155 4.155 24 C 0.046 3.954 25 O -0.382 6.382 26 C 0.053 3.947 27 C -0.182 4.182 28 C -0.175 4.175 29 C -0.174 4.174 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.354 0.646 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -17.634 6.473 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.290 5.290 14 C -0.007 4.007 15 H 0.101 0.899 16 C 0.013 3.987 17 N -0.363 5.363 18 C 0.297 3.703 19 O -0.429 6.429 20 C -0.174 4.174 21 C -0.122 4.122 22 H 0.110 0.890 23 C -0.193 4.193 24 C -0.031 4.031 25 O -0.301 6.301 26 C -0.023 4.023 27 C -0.203 4.203 28 C -0.212 4.212 29 C -0.212 4.212 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.245 0.755 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.126 0.874 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.388 -18.349 6.835 19.630 hybrid contribution -1.048 1.620 -0.848 2.108 sum 0.340 -16.729 5.986 17.771 Atomic orbital electron populations 1.69617 1.05944 1.28106 1.50601 1.25262 0.95632 0.99751 0.97282 0.85811 0.79739 0.81130 0.77742 1.19194 1.20753 1.20720 1.19741 0.93380 0.82202 1.47522 0.87880 1.41876 1.09195 1.04639 1.64260 1.19803 0.88386 0.84709 0.84617 1.90536 1.13716 1.87052 1.55439 1.21719 0.94389 0.90862 1.01292 1.60250 1.17945 0.99237 1.51573 1.21455 0.96850 0.89885 0.92516 0.89911 1.21218 0.98816 0.95718 0.82911 1.45831 1.51741 1.22684 1.16077 1.20587 0.78055 0.84556 0.87120 1.90675 1.54766 1.22525 1.74908 1.21674 1.01674 1.00308 0.93728 1.22446 0.96663 0.99291 0.93776 0.88984 1.23035 0.96611 1.02294 0.97315 1.23128 0.94632 0.97018 0.88338 1.88876 1.59167 1.63440 1.18586 1.23708 0.86932 0.99913 0.91754 1.23119 0.95612 1.03039 0.98482 1.23017 0.95118 1.00560 1.02461 1.22906 1.04257 0.90630 1.03380 0.91894 0.77493 0.93445 0.89801 0.82532 0.91472 0.91441 0.75499 0.88510 0.88278 0.90264 0.90364 0.92438 0.90102 0.87683 0.92391 0.87394 0.88645 0.88727 0.88796 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.07 9.68 -14.93 -0.14 -8.22 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.60 5.29 -10.97 -0.06 -13.66 16 10 C 0.44 9.68 7.82 -10.99 -0.09 9.59 16 11 O -0.58 -14.99 15.77 5.55 0.09 -14.90 16 12 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 13 N -0.66 -9.08 5.33 -107.99 -0.58 -9.65 16 14 C 0.10 1.10 2.35 -67.71 -0.16 0.94 16 15 H 0.08 0.83 7.55 -51.93 -0.39 0.44 16 16 C 0.14 1.52 5.19 -4.04 -0.02 1.50 16 17 N -0.71 -7.90 5.39 -60.29 -0.32 -8.22 16 18 C 0.51 6.03 7.62 -10.98 -0.08 5.95 16 19 O -0.55 -8.17 14.58 5.55 0.08 -8.09 16 20 C -0.13 -1.19 5.11 -27.88 -0.14 -1.34 16 21 C -0.10 -0.98 2.71 -88.61 -0.24 -1.22 16 22 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 23 C -0.15 -1.19 6.60 -25.20 -0.17 -1.35 16 24 C 0.05 0.41 7.70 37.73 0.29 0.70 16 25 O -0.38 -4.72 11.52 -35.23 -0.41 -5.13 16 26 C 0.05 0.61 6.46 38.21 0.25 0.86 16 27 C -0.18 -1.78 5.11 -90.62 -0.46 -2.24 16 28 C -0.17 -1.59 10.18 -26.69 -0.27 -1.86 16 29 C -0.17 -1.46 9.86 -26.69 -0.26 -1.73 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 32 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 34 H 0.35 5.38 8.01 -39.29 -0.31 5.06 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.72 7.72 -51.93 -0.40 0.32 16 37 H 0.41 4.36 8.14 -40.82 -0.33 4.03 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.08 0.53 7.86 -51.92 -0.41 0.12 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.11 1.36 7.13 -51.93 -0.37 0.99 16 45 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 46 H 0.11 1.12 7.95 -51.93 -0.41 0.70 16 47 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -31.90 410.68 -9.28 -41.19 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -8.35 Total: 17.09 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.63 Total: 2.81 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.23 Total: -54.70 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.24 Total: -28.12 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.90 -9.28 -41.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731400413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.986 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds