Wall clock time and date at job start Sat Apr 11 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48506 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47145 * 299.99322 * 3 2 1 6 6 H 1.48501 * 109.47784 * 59.99445 * 3 2 1 7 7 C 1.38942 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00409 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00208 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00178 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00248 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47315 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00258 * 180.23046 * 13 12 10 15 15 H 1.08998 * 109.47296 * 327.47059 * 14 13 12 16 16 C 1.53010 * 109.47148 * 207.47253 * 14 13 12 17 17 N 1.46496 * 109.46812 * 54.99976 * 16 14 13 18 18 C 1.34778 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00155 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47059 * 179.97438 * 20 18 17 22 22 H 1.08998 * 110.80870 * 302.82713 * 21 20 18 23 23 C 1.54811 * 110.90808 * 179.15941 * 21 20 18 24 24 C 1.54097 * 104.18769 * 220.92366 * 23 21 20 25 25 O 1.43739 * 107.29578 * 357.96794 * 24 23 21 26 26 C 1.44378 * 106.97427 * 26.51829 * 25 24 23 27 27 C 1.52998 * 109.47186 * 87.47019 * 14 13 12 28 28 C 1.52993 * 117.50059 * 252.40956 * 27 14 13 29 29 C 1.53003 * 117.49867 * 183.74379 * 27 14 13 30 30 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99791 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47489 * 59.99936 * 12 10 9 33 33 H 1.09002 * 109.47542 * 299.99879 * 12 10 9 34 34 H 1.00895 * 111.00167 * 304.18986 * 13 12 10 35 35 H 1.09001 * 109.46623 * 295.00087 * 16 14 13 36 36 H 1.08999 * 109.47118 * 174.99981 * 16 14 13 37 37 H 0.96996 * 120.00374 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.47180 * 60.00412 * 20 18 17 39 39 H 1.08999 * 109.47124 * 299.99961 * 20 18 17 40 40 H 1.09009 * 110.48557 * 339.59553 * 23 21 20 41 41 H 1.08997 * 110.48795 * 102.11327 * 23 21 20 42 42 H 1.09003 * 109.88211 * 117.39391 * 24 23 21 43 43 H 1.09003 * 109.87694 * 238.54301 * 24 23 21 44 44 H 1.09004 * 110.61822 * 201.44135 * 26 25 24 45 45 H 1.08992 * 110.62446 * 78.43858 * 26 25 24 46 46 H 1.08997 * 115.54529 * 38.08037 * 27 14 13 47 47 H 1.09003 * 117.49681 * 359.97438 * 28 27 14 48 48 H 1.08998 * 117.50439 * 145.02387 * 28 27 14 49 49 H 1.08990 * 117.49895 * 214.97750 * 29 27 14 50 50 H 1.08993 * 117.49923 * 359.97438 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8628 0.0011 13 7 2.1985 -5.9794 0.0016 14 6 1.4983 -7.2708 -0.0033 15 1 0.5617 -7.1784 0.5466 16 6 2.3782 -8.3307 0.6626 17 7 2.7588 -7.8776 2.0027 18 6 3.5390 -8.6542 2.7803 19 8 3.9257 -9.7284 2.3707 20 6 3.9310 -8.1880 4.1587 21 6 4.8108 -9.2480 4.8246 22 1 4.2957 -10.2076 4.8674 23 6 5.2508 -8.7928 6.2374 24 6 6.7268 -9.2255 6.3310 25 8 7.0524 -9.9018 5.1052 26 6 6.1686 -9.3814 4.0890 27 6 1.2036 -7.6856 -1.4462 28 6 -0.2481 -7.6043 -1.9222 29 6 0.3972 -8.9679 -1.6619 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9208 -0.8886 33 1 0.6176 -4.9205 0.8914 34 1 2.8358 -5.9107 -0.7776 35 1 3.2753 -8.4868 0.0634 36 1 1.8248 -9.2667 0.7389 37 1 2.4498 -7.0185 2.3302 38 1 3.0342 -8.0320 4.7582 39 1 4.4843 -7.2520 4.0820 40 1 5.1637 -7.7105 6.3338 41 1 4.6555 -9.2922 7.0017 42 1 7.3632 -8.3487 6.4509 43 1 6.8618 -9.9021 7.1749 44 1 6.0870 -10.0805 3.2566 45 1 6.5142 -8.4079 3.7415 46 1 1.9845 -7.4543 -2.1706 47 1 -0.9934 -7.2556 -1.2072 48 1 -0.4225 -7.3200 -2.9599 49 1 0.6472 -9.5798 -2.5285 50 1 0.0770 -9.5161 -0.7760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731400413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:32 Heat of formation + Delta-G solvation = -127.011570 kcal Electronic energy + Delta-G solvation = -29357.495568 eV Core-core repulsion = 25190.911242 eV Total energy + Delta-G solvation = -4166.584326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11624 -40.34004 -39.83216 -39.07735 -36.22539 -35.85330 -34.79255 -34.49951 -33.22844 -31.12345 -30.36202 -28.29682 -27.30798 -25.61149 -24.09440 -23.53021 -23.12459 -21.80252 -21.60363 -21.08172 -20.74762 -19.87971 -18.27606 -17.85465 -17.33492 -17.18577 -16.79557 -16.78010 -16.48922 -16.35786 -16.13668 -15.83620 -15.76191 -15.29097 -15.02963 -14.83806 -14.52760 -14.43860 -13.97974 -13.78658 -13.55266 -13.48816 -13.15007 -12.96288 -12.86949 -12.68180 -12.57402 -12.43419 -12.38514 -12.24396 -12.20454 -12.11448 -11.86369 -11.54290 -11.49521 -11.41170 -11.03027 -10.72497 -10.64718 -10.30952 -9.98818 -9.92988 -9.33792 -8.45406 -5.93316 1.37162 1.43117 1.56364 1.73533 2.08883 2.27697 2.30686 2.83515 2.93162 3.04289 3.22740 3.50632 3.56076 3.71416 3.82929 3.92087 3.93774 4.05012 4.07042 4.18007 4.22737 4.32907 4.34261 4.36851 4.48808 4.51630 4.58782 4.61976 4.63524 4.74281 4.79344 4.83910 4.86287 4.89931 4.92160 4.96059 5.04705 5.13553 5.20828 5.27378 5.28328 5.43168 5.57156 5.89579 5.92462 6.10446 6.33505 6.62382 6.68675 7.15390 7.35707 7.59788 8.15104 8.72082 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008407 B = 0.002569 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.822710 B =10895.872172 C =13692.858588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.623 6.623 12 C 0.068 3.932 13 N -0.665 5.665 14 C 0.117 3.883 15 H 0.098 0.902 16 C 0.142 3.858 17 N -0.709 5.709 18 C 0.505 3.495 19 O -0.586 6.586 20 C -0.127 4.127 21 C -0.099 4.099 22 H 0.081 0.919 23 C -0.146 4.146 24 C 0.036 3.964 25 O -0.409 6.409 26 C 0.051 3.949 27 C -0.194 4.194 28 C -0.174 4.174 29 C -0.162 4.162 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.345 0.655 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -17.492 7.557 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.509 6.509 12 C -0.064 4.064 13 N -0.296 5.296 14 C 0.006 3.994 15 H 0.116 0.884 16 C 0.017 3.983 17 N -0.359 5.359 18 C 0.293 3.707 19 O -0.467 6.467 20 C -0.166 4.166 21 C -0.118 4.118 22 H 0.099 0.901 23 C -0.183 4.183 24 C -0.040 4.040 25 O -0.329 6.329 26 C -0.025 4.025 27 C -0.215 4.215 28 C -0.211 4.211 29 C -0.200 4.200 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.164 0.836 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.113 0.887 49 H 0.118 0.882 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.124 -18.210 7.926 19.861 hybrid contribution -0.544 1.487 -1.208 1.992 sum -0.668 -16.723 6.719 18.034 Atomic orbital electron populations 1.69669 1.06728 1.29128 1.50608 1.25971 0.96492 1.02255 0.96476 0.84928 0.78088 0.77441 0.78253 1.19870 1.19833 1.19640 1.19654 0.92606 0.84073 1.49573 0.90451 1.41938 1.09327 1.04710 1.65175 1.20909 0.88228 0.86161 0.81996 1.90511 1.15897 1.87969 1.56538 1.21561 0.93922 0.87718 1.03247 1.60231 1.17959 1.00073 1.51356 1.21386 0.96800 0.87916 0.93267 0.88396 1.21177 0.98173 0.96230 0.82740 1.45857 1.51413 1.22687 1.15977 1.21134 0.77454 0.84046 0.88110 1.90666 1.56046 1.24142 1.75823 1.21696 1.02751 1.00052 0.92148 1.22379 0.95411 0.99196 0.94821 0.90084 1.23022 0.95685 1.03378 0.96234 1.23379 0.95768 0.97528 0.87368 1.88839 1.59778 1.64317 1.19923 1.23647 0.88357 0.99013 0.91513 1.23007 0.96013 1.04791 0.97658 1.23085 0.94400 1.00969 1.02671 1.22970 1.02839 0.90269 1.03936 0.91385 0.76980 0.91693 0.87268 0.83603 0.93356 0.90682 0.75017 0.85705 0.87471 0.88760 0.88607 0.91740 0.88738 0.90014 0.92507 0.88343 0.87988 0.88691 0.88197 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.15 13.05 21.66 0.28 -47.87 16 2 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 3 Si 0.99 41.88 29.55 68.60 2.03 43.91 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.33 -18.05 9.68 84.04 0.81 -17.24 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -27.83 5.29 -307.00 -1.62 -29.45 16 10 C 0.44 19.29 7.82 87.66 0.69 19.97 16 11 O -0.62 -32.50 15.77 -3.07 -0.05 -32.55 16 12 C 0.07 1.99 5.96 85.55 0.51 2.50 16 13 N -0.67 -17.58 5.33 -495.57 -2.64 -20.22 16 14 C 0.12 2.25 2.35 44.92 0.11 2.36 16 15 H 0.10 1.65 7.55 -2.39 -0.02 1.63 16 16 C 0.14 2.98 5.19 86.38 0.45 3.43 16 17 N -0.71 -14.90 5.39 -463.04 -2.50 -17.40 16 18 C 0.50 11.59 7.62 87.66 0.67 12.26 16 19 O -0.59 -17.63 14.58 -3.05 -0.04 -17.67 16 20 C -0.13 -2.05 5.11 29.85 0.15 -1.90 16 21 C -0.10 -1.80 2.71 -9.49 -0.03 -1.82 16 22 H 0.08 1.66 8.06 -2.39 -0.02 1.64 16 23 C -0.15 -1.91 6.60 31.58 0.21 -1.70 16 24 C 0.04 0.59 7.70 72.35 0.56 1.15 16 25 O -0.41 -10.20 11.52 -148.98 -1.72 -11.92 16 26 C 0.05 1.21 6.46 72.67 0.47 1.67 16 27 C -0.19 -3.51 5.11 -10.80 -0.06 -3.56 16 28 C -0.17 -2.79 10.18 30.62 0.31 -2.48 16 29 C -0.16 -2.39 9.86 30.62 0.30 -2.09 16 30 H 0.28 13.57 8.31 -92.71 -0.77 12.79 16 31 H 0.40 18.20 7.90 -92.70 -0.73 17.46 16 32 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.11 2.73 8.06 -2.39 -0.02 2.71 16 34 H 0.34 10.40 8.01 -89.70 -0.72 9.69 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.49 7.72 -2.39 -0.02 1.48 16 37 H 0.41 8.05 8.14 -92.71 -0.75 7.30 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.11 1.61 8.11 -2.39 -0.02 1.59 16 40 H 0.09 0.98 7.86 -2.38 -0.02 0.96 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 2.27 7.13 -2.38 -0.02 2.25 16 45 H 0.06 1.31 8.02 -2.39 -0.02 1.29 16 46 H 0.10 1.99 7.95 -2.39 -0.02 1.97 16 47 H 0.10 1.51 8.07 -2.39 -0.02 1.49 16 48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 1.37 7.90 -2.39 -0.02 1.35 16 Total: -1.00 -70.33 410.68 -1.88 -72.21 By element: Atomic # 1 Polarization: 49.80 SS G_CDS: -1.24 Total: 48.57 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.62 Total: 12.39 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -6.48 Total: -114.94 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -1.81 Total: -62.14 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -70.33 -1.88 -72.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731400413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.801 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds