Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99356 * 2 1 4 4 H 1.48494 * 109.47200 * 270.00194 * 3 2 1 5 5 H 1.48496 * 109.47285 * 30.00430 * 3 2 1 6 6 H 1.48498 * 109.46919 * 150.00272 * 3 2 1 7 7 C 1.38808 * 120.00740 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00374 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99439 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99648 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88833 * 51.12428 * 11 10 9 13 13 C 1.55152 * 111.03931 * 287.21752 * 11 10 9 14 14 C 1.54317 * 102.86335 * 206.21265 * 13 11 10 15 15 N 1.47022 * 107.27613 * 22.52834 * 14 13 11 16 16 C 1.34773 * 125.65059 * 180.96383 * 15 14 13 17 17 O 1.21280 * 120.00160 * 179.69352 * 16 15 14 18 18 C 1.50702 * 120.00060 * 359.69590 * 16 15 14 19 19 C 1.52992 * 109.47333 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47292 * 179.97438 * 19 18 16 21 21 H 1.09002 * 110.33140 * 54.29792 * 20 19 18 22 22 C 1.54481 * 110.46871 * 176.61332 * 20 19 18 23 23 C 1.54506 * 104.06328 * 142.85832 * 22 20 19 24 24 C 1.54477 * 104.06393 * 359.97438 * 23 22 20 25 25 H 1.08998 * 110.37477 * 94.85232 * 24 23 22 26 26 C 1.50698 * 110.46533 * 217.14293 * 24 23 22 27 27 N 1.34773 * 120.00275 * 291.88719 * 26 24 23 28 28 O 1.21290 * 120.00146 * 111.88968 * 26 24 23 29 29 O 1.44423 * 104.80156 * 336.01945 * 24 23 22 30 30 C 1.47428 * 108.70128 * 0.70441 * 15 14 13 31 31 H 0.96995 * 120.00512 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00786 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.46784 * 60.00304 * 10 9 7 34 34 H 1.08990 * 109.47330 * 299.99898 * 10 9 7 35 35 H 1.08998 * 110.72432 * 324.76997 * 13 11 10 36 36 H 1.09002 * 110.72095 * 87.87304 * 13 11 10 37 37 H 1.08994 * 109.99169 * 263.04548 * 14 13 11 38 38 H 1.09007 * 109.77253 * 141.88588 * 14 13 11 39 39 H 1.09005 * 109.47235 * 59.99526 * 18 16 15 40 40 H 1.09004 * 109.47005 * 299.99762 * 18 16 15 41 41 H 1.09005 * 109.47600 * 59.99976 * 19 18 16 42 42 H 1.09004 * 109.47547 * 299.99684 * 19 18 16 43 43 H 1.08996 * 110.51209 * 261.50459 * 22 20 19 44 44 H 1.09006 * 110.50965 * 24.21172 * 22 20 19 45 45 H 1.09006 * 110.50783 * 241.35215 * 23 22 20 46 46 H 1.08992 * 110.51043 * 118.64729 * 23 22 20 47 47 H 0.97003 * 119.99608 * 0.02562 * 27 26 24 48 48 H 0.97001 * 120.00261 * 180.02562 * 27 26 24 49 49 H 1.08999 * 110.36768 * 94.93814 * 30 15 14 50 50 H 1.08999 * 110.36409 * 217.26111 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0017 11 6 1.0643 -4.8196 -0.0008 12 1 0.3250 -4.6996 -0.7927 13 6 0.3781 -4.9648 1.3832 14 6 -0.0012 -6.4601 1.4234 15 7 0.8825 -7.1603 0.4798 16 6 0.8559 -8.4806 0.2106 17 8 1.6319 -8.9512 -0.5938 18 6 -0.1383 -9.3721 0.9091 19 6 0.0413 -10.8127 0.4263 20 6 -0.9677 -11.7179 1.1360 21 1 -1.9796 -11.3358 1.0012 22 6 -0.8637 -13.1643 0.6034 23 6 -1.0930 -14.0422 1.8540 24 6 -1.3077 -13.0224 2.9943 25 1 -2.3717 -12.8400 3.1449 26 6 -0.6757 -13.5173 4.2697 27 7 -1.1865 -14.5924 4.9020 28 8 0.2927 -12.9481 4.7273 29 8 -0.6503 -11.8188 2.5415 30 6 1.7985 -6.1778 -0.1279 31 1 -0.4850 0.8400 0.0004 32 1 0.3558 -2.3881 -0.0005 33 1 2.6857 -3.7147 0.8879 34 1 2.6843 -3.7140 -0.8921 35 1 1.0728 -4.7178 2.1859 36 1 -0.5126 -4.3391 1.4396 37 1 -1.0409 -6.5890 1.1230 38 1 0.1471 -6.8512 2.4300 39 1 -1.1501 -9.0364 0.6814 40 1 0.0261 -9.3261 1.9856 41 1 1.0530 -11.1487 0.6537 42 1 -0.1235 -10.8584 -0.6502 43 1 -1.6358 -13.3531 -0.1425 44 1 0.1260 -13.3469 0.1847 45 1 -0.2166 -14.6589 2.0536 46 1 -1.9783 -14.6650 1.7264 47 1 -1.9607 -15.0478 4.5358 48 1 -0.7799 -14.9107 5.7231 49 1 2.7422 -6.1514 0.4169 50 1 1.9716 -6.4187 -1.1768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731667553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -117.944308 kcal Electronic energy + Delta-G solvation = -28927.195813 eV Core-core repulsion = 24761.004673 eV Total energy + Delta-G solvation = -4166.191140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76339 -39.98769 -38.82809 -37.62350 -34.64876 -34.33493 -33.79985 -32.51138 -32.17370 -30.28580 -29.50123 -28.78932 -26.06996 -24.77769 -23.22813 -22.40663 -22.22896 -21.42228 -20.97715 -20.01705 -19.01598 -18.20484 -17.44421 -17.27508 -17.04589 -16.67069 -16.34121 -15.98761 -15.32585 -15.21635 -14.78480 -14.66956 -14.32272 -14.18420 -13.79779 -13.61748 -13.50193 -13.24203 -13.06466 -12.78424 -12.53112 -12.41660 -12.33053 -12.23082 -11.98813 -11.59829 -11.43324 -11.34482 -11.14960 -11.10070 -10.84970 -10.63569 -10.48913 -10.44696 -10.35408 -10.22140 -10.09474 -10.03915 -9.77459 -9.66391 -8.86656 -8.55266 -6.91566 -5.76149 -3.04630 2.10779 2.63572 2.69507 3.03392 3.44882 3.50172 3.51636 3.55658 3.94545 4.14022 4.29671 4.35759 4.48848 4.58681 4.60038 4.71510 4.80602 4.85187 4.86801 5.02640 5.07712 5.14675 5.20467 5.25667 5.35789 5.36290 5.43748 5.55659 5.57367 5.58484 5.70522 5.76925 5.94553 5.98728 6.07697 6.08188 6.15275 6.19639 6.27462 6.35523 6.41737 6.48087 6.75078 6.77784 6.87097 7.59973 7.71394 7.75775 8.21322 8.42811 9.54261 10.11416 10.46481 11.46768 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.001627 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.451923 B =17205.014935 C =17705.264278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.084 0.916 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.617 5.617 16 C 0.527 3.473 17 O -0.549 6.549 18 C -0.135 4.135 19 C -0.096 4.096 20 C 0.071 3.929 21 H 0.076 0.924 22 C -0.149 4.149 23 C -0.144 4.144 24 C 0.055 3.945 25 H 0.095 0.905 26 C 0.521 3.479 27 N -0.854 5.854 28 O -0.517 6.517 29 O -0.338 6.338 30 C 0.112 3.888 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.401 0.599 48 H 0.405 0.595 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 -33.777 5.810 35.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.024 4.024 15 N -0.351 5.351 16 C 0.316 3.684 17 O -0.427 6.427 18 C -0.175 4.175 19 C -0.134 4.134 20 C 0.014 3.986 21 H 0.093 0.907 22 C -0.187 4.187 23 C -0.182 4.182 24 C -0.006 4.006 25 H 0.113 0.887 26 C 0.304 3.696 27 N -0.420 5.420 28 O -0.391 6.391 29 O -0.256 6.256 30 C -0.011 4.011 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.229 0.771 48 H 0.237 0.763 49 H 0.087 0.913 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.981 -33.315 5.648 34.720 hybrid contribution -0.369 0.513 0.164 0.653 sum -8.350 -32.802 5.812 34.344 Atomic orbital electron populations 1.69654 1.05100 1.25633 1.57896 1.24730 0.95529 0.97677 1.03042 0.86182 0.78657 0.83802 0.77514 1.21737 1.21793 1.20763 1.19240 0.91089 0.84140 1.42557 0.91146 1.42307 1.05832 0.99827 1.89530 1.20557 0.92789 0.84889 0.98176 1.22567 0.98605 0.93742 0.97569 0.89739 1.22658 1.02132 0.93081 0.98068 1.22143 0.93896 0.93592 0.92762 1.48579 1.36572 1.06812 1.43163 1.20335 0.84803 0.80975 0.82268 1.90687 1.42319 1.73898 1.35798 1.21618 0.99069 0.94539 1.02229 1.21407 0.99883 0.92191 0.99896 1.23187 0.98959 0.95341 0.81126 0.90656 1.22991 1.03972 0.94129 0.97626 1.22905 1.03444 0.98019 0.93821 1.22811 0.97379 0.87516 0.92915 0.88702 1.20275 0.83862 0.80206 0.85262 1.43747 1.35824 1.32563 1.29869 1.90816 1.25987 1.56117 1.66167 1.89324 1.72813 1.40313 1.23194 1.22251 0.92858 0.87026 0.98927 0.93546 0.78261 0.95928 0.96018 0.90245 0.89513 0.91480 0.91444 0.89061 0.88200 0.90024 0.89528 0.89822 0.89805 0.90148 0.89542 0.77056 0.76301 0.91278 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.28 5.55 -59.91 -0.33 -18.61 16 10 C 0.16 3.26 5.72 -4.04 -0.02 3.24 16 11 C -0.11 -1.69 3.04 -88.47 -0.27 -1.96 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.72 6.37 -24.90 -0.16 -1.88 16 14 C 0.10 1.17 6.48 -3.07 -0.02 1.15 16 15 N -0.62 -8.56 3.33 -170.52 -0.57 -9.13 16 16 C 0.53 7.45 7.85 -10.99 -0.09 7.36 16 17 O -0.55 -9.59 16.24 5.56 0.09 -9.50 16 18 C -0.13 -1.38 4.82 -27.89 -0.13 -1.52 16 19 C -0.10 -0.91 4.14 -26.73 -0.11 -1.02 16 20 C 0.07 0.52 3.26 -25.95 -0.08 0.44 16 21 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 22 C -0.15 -0.78 6.63 -25.16 -0.17 -0.95 16 23 C -0.14 -0.61 6.62 -25.17 -0.17 -0.77 16 24 C 0.06 0.36 3.70 -27.11 -0.10 0.26 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 26 C 0.52 4.28 7.35 -10.99 -0.08 4.20 16 27 N -0.85 -2.87 8.87 31.22 0.28 -2.59 16 28 O -0.52 -7.21 17.39 -13.64 -0.24 -7.45 16 29 O -0.34 -3.40 10.32 -54.42 -0.56 -3.96 16 30 C 0.11 1.68 6.38 -2.53 -0.02 1.67 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 9.99 7.67 -40.82 -0.31 9.68 16 33 H 0.02 0.46 7.97 -51.93 -0.41 0.04 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 1.17 7.92 -51.93 -0.41 0.75 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.05 7.96 -51.93 -0.41 0.64 16 41 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.50 7.88 -51.93 -0.41 0.09 16 45 H 0.08 0.39 7.87 -51.93 -0.41 -0.01 16 46 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 47 H 0.40 -0.05 8.83 -40.82 -0.36 -0.41 16 48 H 0.41 1.13 8.93 -40.82 -0.36 0.76 16 49 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 50 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -37.85 408.34 -9.68 -47.53 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.54 Total: 4.61 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.66 Total: 2.87 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.10 Total: -57.70 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.71 Total: -20.91 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.85 -9.68 -47.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731667553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.412 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds