Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99356 * 2 1 4 4 H 1.48494 * 109.47200 * 270.00194 * 3 2 1 5 5 H 1.48496 * 109.47285 * 30.00430 * 3 2 1 6 6 H 1.48498 * 109.46919 * 150.00272 * 3 2 1 7 7 C 1.38808 * 120.00740 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00374 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99439 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99648 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88833 * 51.12428 * 11 10 9 13 13 C 1.55152 * 111.03931 * 287.21752 * 11 10 9 14 14 C 1.54317 * 102.86335 * 206.21265 * 13 11 10 15 15 N 1.47022 * 107.27613 * 22.52834 * 14 13 11 16 16 C 1.34773 * 125.65059 * 180.96383 * 15 14 13 17 17 O 1.21280 * 120.00160 * 179.69352 * 16 15 14 18 18 C 1.50702 * 120.00060 * 359.69590 * 16 15 14 19 19 C 1.52992 * 109.47333 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47292 * 179.97438 * 19 18 16 21 21 H 1.09002 * 110.33140 * 54.29792 * 20 19 18 22 22 C 1.54481 * 110.46871 * 176.61332 * 20 19 18 23 23 C 1.54506 * 104.06328 * 142.85832 * 22 20 19 24 24 C 1.54477 * 104.06393 * 359.97438 * 23 22 20 25 25 H 1.08998 * 110.37477 * 94.85232 * 24 23 22 26 26 C 1.50698 * 110.46533 * 217.14293 * 24 23 22 27 27 N 1.34773 * 120.00275 * 291.88719 * 26 24 23 28 28 O 1.21290 * 120.00146 * 111.88968 * 26 24 23 29 29 O 1.44423 * 104.80156 * 336.01945 * 24 23 22 30 30 C 1.47428 * 108.70128 * 0.70441 * 15 14 13 31 31 H 0.96995 * 120.00512 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00786 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.46784 * 60.00304 * 10 9 7 34 34 H 1.08990 * 109.47330 * 299.99898 * 10 9 7 35 35 H 1.08998 * 110.72432 * 324.76997 * 13 11 10 36 36 H 1.09002 * 110.72095 * 87.87304 * 13 11 10 37 37 H 1.08994 * 109.99169 * 263.04548 * 14 13 11 38 38 H 1.09007 * 109.77253 * 141.88588 * 14 13 11 39 39 H 1.09005 * 109.47235 * 59.99526 * 18 16 15 40 40 H 1.09004 * 109.47005 * 299.99762 * 18 16 15 41 41 H 1.09005 * 109.47600 * 59.99976 * 19 18 16 42 42 H 1.09004 * 109.47547 * 299.99684 * 19 18 16 43 43 H 1.08996 * 110.51209 * 261.50459 * 22 20 19 44 44 H 1.09006 * 110.50965 * 24.21172 * 22 20 19 45 45 H 1.09006 * 110.50783 * 241.35215 * 23 22 20 46 46 H 1.08992 * 110.51043 * 118.64729 * 23 22 20 47 47 H 0.97003 * 119.99608 * 0.02562 * 27 26 24 48 48 H 0.97001 * 120.00261 * 180.02562 * 27 26 24 49 49 H 1.08999 * 110.36768 * 94.93814 * 30 15 14 50 50 H 1.08999 * 110.36409 * 217.26111 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0017 11 6 1.0643 -4.8196 -0.0008 12 1 0.3250 -4.6996 -0.7927 13 6 0.3781 -4.9648 1.3832 14 6 -0.0012 -6.4601 1.4234 15 7 0.8825 -7.1603 0.4798 16 6 0.8559 -8.4806 0.2106 17 8 1.6319 -8.9512 -0.5938 18 6 -0.1383 -9.3721 0.9091 19 6 0.0413 -10.8127 0.4263 20 6 -0.9677 -11.7179 1.1360 21 1 -1.9796 -11.3358 1.0012 22 6 -0.8637 -13.1643 0.6034 23 6 -1.0930 -14.0422 1.8540 24 6 -1.3077 -13.0224 2.9943 25 1 -2.3717 -12.8400 3.1449 26 6 -0.6757 -13.5173 4.2697 27 7 -1.1865 -14.5924 4.9020 28 8 0.2927 -12.9481 4.7273 29 8 -0.6503 -11.8188 2.5415 30 6 1.7985 -6.1778 -0.1279 31 1 -0.4850 0.8400 0.0004 32 1 0.3558 -2.3881 -0.0005 33 1 2.6857 -3.7147 0.8879 34 1 2.6843 -3.7140 -0.8921 35 1 1.0728 -4.7178 2.1859 36 1 -0.5126 -4.3391 1.4396 37 1 -1.0409 -6.5890 1.1230 38 1 0.1471 -6.8512 2.4300 39 1 -1.1501 -9.0364 0.6814 40 1 0.0261 -9.3261 1.9856 41 1 1.0530 -11.1487 0.6537 42 1 -0.1235 -10.8584 -0.6502 43 1 -1.6358 -13.3531 -0.1425 44 1 0.1260 -13.3469 0.1847 45 1 -0.2166 -14.6589 2.0536 46 1 -1.9783 -14.6650 1.7264 47 1 -1.9607 -15.0478 4.5358 48 1 -0.7799 -14.9107 5.7231 49 1 2.7422 -6.1514 0.4169 50 1 1.9716 -6.4187 -1.1768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731667553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -146.783552 kcal Electronic energy + Delta-G solvation = -28928.446376 eV Core-core repulsion = 24761.004673 eV Total energy + Delta-G solvation = -4167.441704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37661 -41.04609 -39.48301 -38.84476 -36.44090 -34.92078 -34.55210 -33.87910 -32.93500 -31.89906 -30.42621 -29.81554 -27.36552 -25.96105 -24.42771 -23.86957 -22.99756 -22.00466 -21.47711 -21.39411 -20.08188 -19.14950 -18.67340 -18.17079 -17.88433 -17.54566 -17.28545 -16.86176 -16.46309 -16.26417 -15.85509 -15.57378 -15.36370 -15.27984 -14.94390 -14.84595 -14.63593 -14.33151 -14.22931 -13.97209 -13.84430 -13.60641 -13.02594 -13.00556 -12.93852 -12.76012 -12.70230 -12.61635 -12.23019 -12.11295 -12.01166 -11.94275 -11.78729 -11.68452 -11.63675 -11.61239 -11.06993 -10.92833 -10.90387 -10.72184 -10.64375 -9.68882 -8.99146 -7.94758 -5.23206 1.48543 1.49792 1.53860 1.58240 1.59617 1.95918 2.20587 2.56651 3.09142 3.32506 3.39586 3.54362 3.64918 3.71460 3.78201 3.87609 3.92967 3.97337 4.12279 4.20185 4.25046 4.30386 4.33611 4.40420 4.46525 4.53501 4.58792 4.64246 4.67392 4.73131 4.80087 4.83682 4.92427 5.01173 5.03001 5.05376 5.07508 5.13209 5.23242 5.25488 5.30800 5.39832 5.50742 5.77395 5.92248 6.27599 6.45221 6.51154 7.10573 7.32112 7.34772 8.09046 8.34190 9.28526 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.001627 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.451923 B =17205.014935 C =17705.264278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.740 5.740 10 C 0.164 3.836 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.118 4.118 14 C 0.105 3.895 15 N -0.619 5.619 16 C 0.521 3.479 17 O -0.590 6.590 18 C -0.124 4.124 19 C -0.094 4.094 20 C 0.072 3.928 21 H 0.102 0.898 22 C -0.150 4.150 23 C -0.136 4.136 24 C 0.051 3.949 25 H 0.129 0.871 26 C 0.514 3.486 27 N -0.828 5.828 28 O -0.589 6.589 29 O -0.378 6.378 30 C 0.117 3.883 31 H 0.252 0.748 32 H 0.376 0.624 33 H 0.025 0.975 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.126 0.874 47 H 0.422 0.578 48 H 0.410 0.590 49 H 0.068 0.932 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.287 -35.474 6.160 37.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.383 5.383 10 C 0.037 3.963 11 C -0.115 4.115 12 H 0.097 0.903 13 C -0.156 4.156 14 C -0.017 4.017 15 N -0.353 5.353 16 C 0.312 3.688 17 O -0.471 6.471 18 C -0.164 4.164 19 C -0.132 4.132 20 C 0.015 3.985 21 H 0.119 0.881 22 C -0.187 4.187 23 C -0.174 4.174 24 C -0.010 4.010 25 H 0.147 0.853 26 C 0.299 3.701 27 N -0.394 5.394 28 O -0.468 6.468 29 O -0.297 6.297 30 C -0.006 4.006 31 H 0.061 0.939 32 H 0.209 0.791 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.144 0.856 47 H 0.254 0.746 48 H 0.242 0.758 49 H 0.086 0.914 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.997 -35.087 6.011 36.975 hybrid contribution 0.274 0.956 0.059 0.996 sum -9.723 -34.131 6.071 36.004 Atomic orbital electron populations 1.69797 1.06457 1.26093 1.59357 1.25523 0.96417 1.00927 1.03584 0.85159 0.77715 0.79601 0.77387 1.21504 1.22006 1.19628 1.19625 0.91508 0.85424 1.41432 0.90861 1.42455 1.05665 1.00796 1.89410 1.20650 0.93411 0.84402 0.97828 1.22340 0.97696 0.92651 0.98785 0.90322 1.22604 1.01604 0.94978 0.96396 1.22222 0.94657 0.91423 0.93392 1.48678 1.36540 1.06811 1.43234 1.21091 0.84876 0.81064 0.81779 1.90666 1.44069 1.74568 1.37762 1.21640 0.99194 0.94035 1.01510 1.21370 0.99124 0.92304 1.00402 1.23272 0.99064 0.96084 0.80075 0.88077 1.23020 1.04066 0.93048 0.98593 1.22933 1.04755 0.97502 0.92160 1.23108 0.98417 0.87051 0.92439 0.85350 1.20794 0.83045 0.80441 0.85822 1.43571 1.35674 1.30881 1.29304 1.90783 1.29193 1.58645 1.68168 1.89290 1.73957 1.42018 1.24458 1.22070 0.93095 0.86860 0.98620 0.93949 0.79124 0.95698 0.96385 0.90850 0.89812 0.88961 0.89528 0.86077 0.88179 0.93122 0.89313 0.87174 0.91458 0.91387 0.85564 0.74639 0.75825 0.91408 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.60 13.06 21.65 0.28 -58.31 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -37.35 5.55 -343.45 -1.91 -39.26 16 10 C 0.16 6.56 5.72 86.38 0.49 7.06 16 11 C -0.10 -3.03 3.04 -9.40 -0.03 -3.06 16 12 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 13 C -0.12 -3.23 6.37 31.78 0.20 -3.02 16 14 C 0.10 2.26 6.48 86.73 0.56 2.82 16 15 N -0.62 -16.58 3.33 -811.80 -2.70 -19.28 16 16 C 0.52 14.45 7.85 87.66 0.69 15.14 16 17 O -0.59 -21.00 16.24 -3.03 -0.05 -21.05 16 18 C -0.12 -2.37 4.82 29.85 0.14 -2.23 16 19 C -0.09 -1.73 4.14 30.59 0.13 -1.60 16 20 C 0.07 0.91 3.26 31.10 0.10 1.01 16 21 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 22 C -0.15 -1.23 6.63 31.61 0.21 -1.02 16 23 C -0.14 -0.76 6.62 31.61 0.21 -0.55 16 24 C 0.05 0.54 3.70 30.35 0.11 0.66 16 25 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 26 C 0.51 8.04 7.35 87.66 0.64 8.68 16 27 N -0.83 -4.03 8.87 -173.53 -1.54 -5.57 16 28 O -0.59 -17.03 17.39 15.29 0.27 -16.77 16 29 O -0.38 -7.22 10.32 -130.63 -1.35 -8.57 16 30 C 0.12 3.50 6.38 86.86 0.55 4.06 16 31 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.38 19.86 7.67 -92.71 -0.71 19.15 16 33 H 0.03 1.00 7.97 -2.38 -0.02 0.98 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 2.10 7.92 -2.39 -0.02 2.08 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.10 1.96 7.96 -2.39 -0.02 1.95 16 41 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 42 H 0.09 1.55 8.10 -2.38 -0.02 1.53 16 43 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.77 7.88 -2.38 -0.02 0.76 16 45 H 0.07 0.57 7.87 -2.38 -0.02 0.55 16 46 H 0.13 -0.29 8.14 -2.39 -0.02 -0.30 16 47 H 0.42 -1.42 8.83 -92.71 -0.82 -2.24 16 48 H 0.41 1.73 8.93 -92.71 -0.83 0.90 16 49 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 50 H 0.07 2.14 8.04 -2.39 -0.02 2.12 16 Total: -1.00 -85.37 408.34 -1.04 -86.41 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -1.40 Total: 22.92 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.33 Total: 11.17 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.86 Total: -122.42 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.13 Total: -46.38 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -85.37 -1.04 -86.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731667553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.371 kcal (2) G-P(sol) polarization free energy of solvation -85.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds