Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00391 * 2 1 4 4 H 1.48503 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47116 * 300.00066 * 3 2 1 6 6 H 1.48496 * 109.47197 * 60.00160 * 3 2 1 7 7 C 1.38822 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99430 * 201.19189 * 7 2 1 9 9 N 1.36929 * 119.99987 * 21.18765 * 7 2 1 10 10 C 1.46498 * 120.00041 * 36.88913 * 9 7 2 11 11 C 1.53002 * 109.47098 * 89.99773 * 10 9 7 12 12 N 1.46506 * 109.46658 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99396 * 179.97438 * 12 11 10 14 14 O 1.21275 * 120.00457 * 0.02562 * 13 12 11 15 15 C 1.50710 * 119.99796 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47057 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46613 * 179.97438 * 16 15 13 18 18 H 1.09001 * 110.33096 * 55.79929 * 17 16 15 19 19 C 1.54487 * 110.36882 * 178.16238 * 17 16 15 20 20 C 1.54511 * 104.06081 * 142.81190 * 19 17 16 21 21 C 1.54478 * 104.06284 * 359.97438 * 20 19 17 22 22 H 1.09000 * 110.46434 * 94.90475 * 21 20 19 23 23 C 1.50698 * 110.37362 * 217.19128 * 21 20 19 24 24 N 1.34781 * 119.99816 * 291.83575 * 23 21 20 25 25 O 1.21273 * 120.00313 * 111.83733 * 23 21 20 26 26 O 1.44421 * 110.37573 * 293.54082 * 17 16 15 27 27 C 1.46503 * 119.99983 * 216.88174 * 9 7 2 28 28 C 1.52996 * 117.49981 * 14.48305 * 27 9 7 29 29 C 1.52991 * 117.50073 * 305.82137 * 27 9 7 30 30 H 0.97006 * 119.99780 * 354.82440 * 1 2 3 31 31 H 1.09002 * 109.47199 * 329.99448 * 10 9 7 32 32 H 1.09009 * 109.46960 * 209.99618 * 10 9 7 33 33 H 1.08995 * 109.47054 * 60.00378 * 11 10 9 34 34 H 1.08997 * 109.47475 * 299.99598 * 11 10 9 35 35 H 0.96998 * 120.00751 * 359.97438 * 12 11 10 36 36 H 1.08993 * 109.47006 * 60.00024 * 15 13 12 37 37 H 1.08997 * 109.46694 * 300.00366 * 15 13 12 38 38 H 1.08999 * 109.46985 * 299.99825 * 16 15 13 39 39 H 1.09002 * 109.47361 * 59.99829 * 16 15 13 40 40 H 1.08995 * 110.50916 * 261.45722 * 19 17 16 41 41 H 1.08995 * 110.50953 * 24.16962 * 19 17 16 42 42 H 1.09003 * 110.51058 * 241.35632 * 20 19 17 43 43 H 1.08991 * 110.51015 * 118.64737 * 20 19 17 44 44 H 0.96994 * 119.99925 * 0.02562 * 24 23 21 45 45 H 0.97000 * 120.00197 * 179.97438 * 24 23 21 46 46 H 1.08999 * 115.54635 * 160.15102 * 27 9 7 47 47 H 1.09005 * 117.49557 * 359.97438 * 28 27 9 48 48 H 1.08995 * 117.50385 * 145.01297 * 28 27 9 49 49 H 1.09004 * 117.50134 * 214.97798 * 29 27 9 50 50 H 1.09007 * 117.50267 * 359.97373 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0353 -1.2341 0.3376 9 7 1.3949 -2.3478 -0.4296 10 6 0.4551 -2.2980 -1.5523 11 6 1.2135 -2.5194 -2.8626 12 7 0.2735 -2.4702 -3.9852 13 6 0.7197 -2.6400 -5.2456 14 8 1.8992 -2.8341 -5.4504 15 6 -0.2471 -2.5889 -6.4006 16 6 0.5114 -2.8104 -7.7108 17 6 -0.4703 -2.7590 -8.8831 18 1 -1.0205 -1.8180 -8.8755 19 6 0.2809 -2.9347 -10.2216 20 6 -0.6817 -3.7815 -11.0840 21 6 -1.9002 -4.0178 -10.1644 22 1 -2.6714 -3.2713 -10.3543 23 6 -2.4520 -5.4049 -10.3708 24 7 -3.0500 -5.7258 -11.5352 25 8 -2.3581 -6.2323 -9.4891 26 8 -1.3838 -3.8761 -8.8234 27 6 1.6764 -3.6232 0.2339 28 6 2.3844 -3.5733 1.5893 29 6 3.1405 -4.0523 0.3475 30 1 -0.4850 0.8367 0.0758 31 1 -0.0326 -1.3234 -1.5750 32 1 -0.2969 -3.0779 -1.4316 33 1 1.7011 -3.4940 -2.8399 34 1 1.9654 -1.7396 -2.9834 35 1 -0.6700 -2.3154 -3.8215 36 1 -0.7350 -1.6145 -6.4230 37 1 -0.9988 -3.3689 -6.2799 38 1 1.2633 -2.0306 -7.8316 39 1 0.9990 -3.7850 -7.6880 40 1 0.4605 -1.9664 -10.6886 41 1 1.2204 -3.4647 -10.0655 42 1 -0.2179 -4.7302 -11.3543 43 1 -0.9778 -3.2318 -11.9774 44 1 -3.1248 -5.0642 -12.2405 45 1 -3.4049 -6.6187 -11.6683 46 1 0.9329 -4.4058 0.0830 47 1 2.6411 -2.5914 1.9871 48 1 2.1070 -4.3231 2.3300 49 1 3.3603 -5.1173 0.2719 50 1 3.8944 -3.3859 -0.0718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731880243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -111.101820 kcal Electronic energy + Delta-G solvation = -29124.832243 eV Core-core repulsion = 24958.937815 eV Total energy + Delta-G solvation = -4165.894428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32023 -40.66199 -39.40784 -38.85498 -36.32687 -34.97349 -34.91100 -34.48886 -32.96054 -32.65967 -30.36666 -29.03862 -26.62566 -25.72055 -23.60007 -22.97786 -22.87554 -22.02594 -21.71409 -21.48032 -21.20914 -18.68734 -18.46017 -17.92696 -17.80956 -17.36773 -17.30144 -16.91957 -16.77066 -16.28268 -16.14715 -15.75313 -15.73318 -15.31111 -14.87894 -14.76845 -14.61618 -14.37571 -14.11803 -13.86160 -13.70279 -13.20808 -13.03325 -12.94777 -12.72174 -12.70989 -12.62486 -12.38734 -12.19418 -12.06767 -11.98789 -11.92026 -11.80352 -11.64605 -11.41105 -11.07199 -11.00453 -10.82135 -10.72173 -10.64166 -10.47553 -10.01497 -8.48921 -7.89719 -5.49253 1.40284 1.45038 1.53890 1.54381 1.69413 2.20385 2.23610 2.47429 3.09031 3.11297 3.42188 3.47079 3.57991 3.74255 3.84687 3.94623 3.98054 4.13517 4.20820 4.27329 4.31213 4.35789 4.37006 4.47966 4.49766 4.57665 4.64810 4.68430 4.75901 4.82159 4.92092 4.93294 5.01148 5.03680 5.07282 5.13632 5.19977 5.28333 5.32998 5.46966 5.53327 5.64024 5.73199 5.77535 5.92401 6.42669 6.45248 6.64432 7.09947 7.31819 7.32272 7.78285 8.29282 9.07444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.001988 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.670503 B =14082.424989 C =14879.496024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.027 4.027 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.266 4.266 8 H 0.051 0.949 9 N -0.564 5.564 10 C 0.146 3.854 11 C 0.121 3.879 12 N -0.716 5.716 13 C 0.502 3.498 14 O -0.595 6.595 15 C -0.127 4.127 16 C -0.094 4.094 17 C 0.073 3.927 18 H 0.101 0.899 19 C -0.150 4.150 20 C -0.135 4.135 21 C 0.050 3.950 22 H 0.129 0.871 23 C 0.515 3.485 24 N -0.828 5.828 25 O -0.588 6.588 26 O -0.378 6.378 27 C 0.100 3.900 28 C -0.190 4.190 29 C -0.211 4.211 30 H 0.256 0.744 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.412 0.588 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.422 0.578 45 H 0.410 0.590 46 H 0.108 0.892 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 -4.769 -27.352 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.225 4.225 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.396 4.396 8 H 0.068 0.932 9 N -0.281 5.281 10 C 0.019 3.981 11 C -0.005 4.005 12 N -0.368 5.368 13 C 0.290 3.710 14 O -0.476 6.476 15 C -0.167 4.167 16 C -0.132 4.132 17 C 0.016 3.984 18 H 0.119 0.881 19 C -0.188 4.188 20 C -0.173 4.173 21 C -0.011 4.011 22 H 0.147 0.853 23 C 0.299 3.701 24 N -0.394 5.394 25 O -0.467 6.467 26 O -0.297 6.297 27 C -0.008 4.008 28 C -0.228 4.228 29 C -0.251 4.251 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.248 0.752 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.145 0.855 44 H 0.254 0.746 45 H 0.242 0.758 46 H 0.126 0.874 47 H 0.091 0.909 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.816 -5.254 -26.683 28.297 hybrid contribution 0.204 0.792 0.188 0.839 sum -7.612 -4.463 -26.496 27.926 Atomic orbital electron populations 1.69981 1.06369 1.26504 1.52499 1.25775 0.95887 1.01104 0.99760 0.85430 0.78676 0.80473 0.77217 1.20076 1.21250 1.21137 1.19042 0.94176 0.86067 1.40310 0.93153 1.43399 1.50333 1.02637 1.31713 1.20977 0.90929 1.02479 0.83703 1.21776 0.92716 0.98986 0.87051 1.46014 1.12469 1.72362 1.05913 1.21514 0.89547 0.74948 0.84943 1.90647 1.20017 1.51259 1.85671 1.21651 0.97647 1.06115 0.91269 1.21360 0.97120 1.02750 0.91967 1.23258 0.89916 0.90310 0.94935 0.88082 1.23023 0.99005 1.02354 0.94375 1.22932 0.93592 1.01505 0.99231 1.23120 0.98940 0.94225 0.84798 0.85324 1.20777 0.77130 0.89817 0.82350 1.43557 1.60544 1.18895 1.16400 1.90779 1.58736 1.52640 1.44569 1.89278 1.61170 1.52130 1.27137 1.21452 0.93109 0.89883 0.96400 1.23076 1.06242 1.01761 0.91748 1.23321 0.97921 1.00506 1.03382 0.93400 0.90048 0.93563 0.94161 0.95183 0.75152 0.86083 0.87836 0.89632 0.93123 0.87197 0.91532 0.91321 0.85469 0.74640 0.75802 0.87417 0.90854 0.87707 0.87778 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.83 11.40 21.65 0.25 -50.58 16 2 C -0.03 -1.48 4.97 84.86 0.42 -1.06 16 3 Si 0.95 44.50 29.61 68.60 2.03 46.53 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.27 -14.49 8.07 84.04 0.68 -13.81 16 8 H 0.05 2.83 7.16 -2.91 -0.02 2.81 16 9 N -0.56 -27.98 2.79 -678.04 -1.89 -29.87 16 10 C 0.15 6.63 5.45 86.38 0.47 7.10 16 11 C 0.12 5.19 6.00 86.38 0.52 5.71 16 12 N -0.72 -24.74 5.56 -463.04 -2.57 -27.31 16 13 C 0.50 17.23 7.83 87.66 0.69 17.92 16 14 O -0.59 -25.62 15.98 -3.01 -0.05 -25.66 16 15 C -0.13 -3.02 5.62 29.85 0.17 -2.86 16 16 C -0.09 -2.13 4.14 30.59 0.13 -2.00 16 17 C 0.07 1.16 3.28 31.10 0.10 1.27 16 18 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 19 C -0.15 -1.66 6.63 31.61 0.21 -1.45 16 20 C -0.13 -1.05 6.62 31.61 0.21 -0.84 16 21 C 0.05 0.65 3.71 30.35 0.11 0.76 16 22 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 23 C 0.51 8.96 7.34 87.66 0.64 9.61 16 24 N -0.83 -5.23 8.87 -173.54 -1.54 -6.77 16 25 O -0.59 -18.08 17.39 15.33 0.27 -17.82 16 26 O -0.38 -8.26 10.26 -130.64 -1.34 -9.60 16 27 C 0.10 4.28 6.61 44.99 0.30 4.58 16 28 C -0.19 -7.55 9.81 30.62 0.30 -7.25 16 29 C -0.21 -8.19 10.08 30.61 0.31 -7.88 16 30 H 0.26 13.76 8.32 -92.70 -0.77 12.98 16 31 H 0.08 4.13 5.45 -2.39 -0.01 4.11 16 32 H 0.05 1.93 8.04 -2.38 -0.02 1.91 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 11.76 8.47 -92.71 -0.79 10.97 16 36 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.42 7.91 -2.39 -0.02 2.41 16 38 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 39 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 42 H 0.07 0.71 7.86 -2.39 -0.02 0.69 16 43 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.42 -0.83 8.83 -92.71 -0.82 -1.65 16 45 H 0.41 2.26 8.93 -92.71 -0.83 1.43 16 46 H 0.11 4.16 8.10 -2.39 -0.02 4.14 16 47 H 0.07 3.31 6.95 -2.38 -0.02 3.29 16 48 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 49 H 0.10 3.39 8.14 -2.38 -0.02 3.38 16 50 H 0.06 2.79 7.98 -2.38 -0.02 2.77 16 Total: -1.00 -82.48 410.68 -1.06 -83.54 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -1.46 Total: 27.76 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.25 Total: 9.78 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -5.76 Total: -114.53 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -1.12 Total: -53.08 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -82.48 -1.06 -83.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731880243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.564 kcal (2) G-P(sol) polarization free energy of solvation -82.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds