Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 110.27363 * 2 1 4 4 C 1.34777 * 119.99786 * 300.70489 * 3 2 1 5 5 O 1.21284 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00218 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09000 * 110.28285 * 304.36501 * 7 6 4 9 9 C 1.55503 * 110.36774 * 182.25172 * 7 6 4 10 10 C 1.55305 * 100.69731 * 204.61167 * 9 7 6 11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7 12 12 O 1.43232 * 107.59109 * 338.54226 * 11 10 9 13 13 C 1.54597 * 110.31008 * 237.91069 * 2 1 3 14 14 C 1.54936 * 102.92026 * 219.02586 * 13 2 1 15 15 N 1.48526 * 103.23136 * 37.41349 * 14 13 2 16 16 C 1.46901 * 111.00218 * 200.28098 * 15 14 13 17 17 C 1.50702 * 109.46785 * 290.12367 * 16 15 14 18 18 O 1.21285 * 119.99964 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99726 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00070 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99696 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99852 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99774 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00298 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47228 * 90.00562 * 24 22 20 26 26 H 1.48499 * 109.47396 * 210.00306 * 24 22 20 27 27 H 1.48495 * 109.47517 * 330.00179 * 24 22 20 28 28 C 1.48125 * 105.86337 * 320.82985 * 15 14 13 29 29 H 1.08992 * 109.47367 * 59.30164 * 1 2 3 30 30 H 1.08999 * 109.46954 * 179.30449 * 1 2 3 31 31 H 1.09008 * 109.46874 * 299.29747 * 1 2 3 32 32 H 0.96996 * 120.00534 * 120.70197 * 3 2 1 33 33 H 1.09004 * 109.46993 * 60.00108 * 6 4 3 34 34 H 1.08997 * 109.47152 * 300.00147 * 6 4 3 35 35 H 1.09007 * 111.32681 * 86.73766 * 9 7 6 36 36 H 1.08995 * 111.14910 * 322.41529 * 9 7 6 37 37 H 1.09002 * 110.85041 * 275.83884 * 10 9 7 38 38 H 1.09001 * 110.84389 * 152.42021 * 10 9 7 39 39 H 1.09009 * 109.82643 * 98.05629 * 11 10 9 40 40 H 1.08995 * 109.83122 * 219.02553 * 11 10 9 41 41 H 1.08999 * 110.72360 * 337.38247 * 13 2 1 42 42 H 1.09006 * 110.72193 * 100.49029 * 13 2 1 43 43 H 1.09003 * 110.66315 * 155.85346 * 14 13 2 44 44 H 1.09007 * 110.66244 * 278.80797 * 14 13 2 45 45 H 1.09007 * 109.47064 * 50.12487 * 16 15 14 46 46 H 1.08995 * 109.46998 * 170.12414 * 16 15 14 47 47 H 0.97005 * 119.99948 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00283 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.94522 * 265.95022 * 28 15 14 50 50 H 1.09002 * 110.00061 * 144.58668 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.7120 2.2129 -1.0036 5 8 0.9992 1.8297 -1.9069 6 6 2.2337 3.6267 -1.0034 7 6 1.7201 4.3600 -2.2440 8 1 1.9939 3.8134 -3.1465 9 6 2.2923 5.8051 -2.2943 10 6 1.2117 6.5133 -3.1560 11 6 -0.0822 5.7873 -2.7291 12 8 0.2946 4.5224 -2.1728 13 6 2.0666 -0.7702 -1.2283 14 6 3.2871 -1.5321 -0.6535 15 7 2.8347 -1.9220 0.7065 16 6 3.9797 -2.2232 1.5760 17 6 4.6307 -3.5048 1.1233 18 8 4.1850 -4.1075 0.1699 19 7 5.7088 -3.9805 1.7774 20 6 6.3014 -5.1461 1.3653 21 1 5.9041 -5.6833 0.5169 22 6 7.4126 -5.6368 2.0399 23 7 7.9809 -6.7538 1.6446 24 14 8.0995 -4.7081 3.5079 25 1 7.4426 -5.1895 4.7497 26 1 9.5632 -4.9407 3.6001 27 1 7.8387 -3.2558 3.3410 28 6 2.0646 -0.7671 1.2236 29 1 -0.3634 0.5246 -0.8836 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.6080 1.6807 0.7222 33 1 3.3235 3.6119 -1.0158 34 1 1.8875 4.1416 -0.1072 35 1 3.2649 5.8294 -2.7859 36 1 2.3474 6.2411 -1.2969 37 1 1.4058 6.3674 -4.2186 38 1 1.1582 7.5751 -2.9153 39 1 -0.6081 6.3790 -1.9797 40 1 -0.7234 5.6334 -3.5970 41 1 1.3179 -1.4681 -1.6033 42 1 2.3745 -0.0788 -2.0128 43 1 3.5069 -2.4150 -1.2537 44 1 4.1579 -0.8786 -0.5995 45 1 4.7024 -1.4091 1.5202 46 1 3.6357 -2.3339 2.6043 47 1 6.0655 -3.4982 2.5397 48 1 8.7564 -7.0966 2.1157 49 1 2.7149 -0.1202 1.8124 50 1 1.2327 -1.1173 1.8348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733396451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = -102.808690 kcal Electronic energy + Delta-G solvation = -29946.340787 eV Core-core repulsion = 25780.805976 eV Total energy + Delta-G solvation = -4165.534810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68737 -39.69301 -38.69591 -37.61365 -34.62121 -33.82777 -32.88247 -32.28659 -31.68468 -31.14750 -29.63116 -27.65191 -27.01828 -25.33323 -23.74691 -22.52895 -21.99065 -21.44675 -20.47227 -19.63255 -19.29893 -18.31306 -17.52413 -17.01797 -16.49191 -16.14326 -15.88024 -15.51088 -15.18855 -14.79340 -14.78286 -14.66642 -14.31332 -13.92541 -13.59129 -13.44528 -13.24436 -13.09402 -13.06121 -12.75851 -12.56765 -12.33032 -12.18791 -12.11754 -12.08710 -11.72659 -11.61961 -11.55633 -11.34135 -11.26178 -11.24332 -11.07670 -10.86709 -10.75851 -10.59952 -9.97019 -9.79317 -9.69480 -9.54962 -9.13209 -8.59709 -8.17644 -8.06972 -6.30079 -3.81393 2.56078 2.94418 3.01318 3.06263 3.14398 3.44910 3.75063 4.01561 4.03184 4.10641 4.25269 4.36209 4.46488 4.61280 4.69444 4.71238 4.78931 4.86026 4.93920 4.99057 5.09347 5.19658 5.21348 5.25990 5.30309 5.34586 5.43795 5.44953 5.48446 5.56198 5.59543 5.69774 5.70217 5.73996 5.81514 5.88425 5.94941 6.02669 6.23082 6.28730 6.43304 6.51278 6.75190 7.07862 7.09292 7.38773 7.59437 8.15591 8.15684 8.61485 8.96619 9.43510 9.85029 10.83169 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002017 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.102378 B =13877.974943 C =14425.061055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 N -0.726 5.726 4 C 0.515 3.485 5 O -0.519 6.519 6 C -0.143 4.143 7 C 0.098 3.902 8 H 0.079 0.921 9 C -0.154 4.154 10 C -0.157 4.157 11 C 0.049 3.951 12 O -0.365 6.365 13 C -0.120 4.120 14 C 0.039 3.961 15 N -0.488 5.488 16 C 0.034 3.966 17 C 0.454 3.546 18 O -0.557 6.557 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 C 0.035 3.965 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.396 0.604 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.047 0.953 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 29.185 -1.892 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.079 3.921 3 N -0.379 5.379 4 C 0.301 3.699 5 O -0.394 6.394 6 C -0.183 4.183 7 C 0.040 3.960 8 H 0.097 0.903 9 C -0.191 4.191 10 C -0.194 4.194 11 C -0.028 4.028 12 O -0.284 6.284 13 C -0.158 4.158 14 C -0.088 4.088 15 N -0.212 5.212 16 C -0.098 4.098 17 C 0.240 3.760 18 O -0.438 6.438 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.094 4.094 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.230 0.770 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.410 27.683 -3.105 30.496 hybrid contribution 1.808 1.721 1.747 3.047 sum -10.602 29.403 -1.358 31.286 Atomic orbital electron populations 1.22152 0.93238 1.02860 1.02958 1.21145 0.94646 0.80463 0.95815 1.46308 1.53016 1.12304 1.26262 1.20423 0.80636 0.86931 0.81917 1.90714 1.35949 1.77089 1.35601 1.21893 1.02307 0.93672 1.00462 1.22768 0.81451 0.94570 0.97181 0.90309 1.23434 0.99453 0.95102 1.01155 1.23110 0.94833 1.00654 1.00816 1.23112 0.96542 0.85008 0.98153 1.88554 1.21415 1.35791 1.82647 1.22849 0.98060 0.98435 0.96502 1.23334 0.95281 0.99711 0.90477 1.64591 1.20555 1.33965 1.02089 1.22111 0.92539 0.97186 0.97966 1.19584 0.82753 0.87454 0.86247 1.90552 1.64041 1.60289 1.28895 1.42203 1.27546 1.23882 1.29650 1.19425 1.09973 0.98245 1.15536 0.86275 1.25035 0.96704 0.96306 0.98197 1.69622 1.22099 1.19911 1.40597 0.86670 0.79688 0.79679 0.83300 1.19622 1.20237 1.19629 1.23265 0.98738 0.91699 0.95650 0.90262 0.91212 0.92968 0.77005 0.87747 0.88328 0.89650 0.90187 0.90451 0.90070 0.91554 0.91506 0.89832 0.90480 0.87992 0.94560 0.93286 0.89194 0.79807 0.91653 0.93531 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.14 37.16 0.30 -1.50 16 2 C 0.17 1.92 0.94 -130.46 -0.12 1.80 16 3 N -0.73 -6.90 5.15 -46.35 -0.24 -7.13 16 4 C 0.51 5.51 6.92 -10.98 -0.08 5.43 16 5 O -0.52 -7.55 12.40 -6.33 -0.08 -7.62 16 6 C -0.14 -1.02 5.46 -27.88 -0.15 -1.17 16 7 C 0.10 0.82 2.93 -25.40 -0.07 0.74 16 8 H 0.08 0.76 8.00 -51.93 -0.42 0.34 16 9 C -0.15 -0.81 6.61 -24.18 -0.16 -0.97 16 10 C -0.16 -0.82 7.00 -24.78 -0.17 -0.99 16 11 C 0.05 0.36 7.80 37.88 0.30 0.65 16 12 O -0.36 -3.94 10.41 -47.11 -0.49 -4.43 16 13 C -0.12 -1.67 5.83 -24.87 -0.15 -1.81 16 14 C 0.04 0.63 5.86 -1.90 -0.01 0.62 16 15 N -0.49 -7.77 4.96 -231.70 -1.15 -8.92 16 16 C 0.03 0.56 5.19 -4.97 -0.03 0.53 16 17 C 0.45 10.31 7.58 -10.99 -0.08 10.22 16 18 O -0.56 -14.93 14.42 5.55 0.08 -14.85 16 19 N -0.59 -14.08 5.09 -10.97 -0.06 -14.14 16 20 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 C 0.04 0.41 6.16 -2.63 -0.02 0.40 16 29 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 30 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.40 2.70 8.09 -40.82 -0.33 2.37 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 42 H 0.08 1.11 6.68 -51.93 -0.35 0.76 16 43 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 44 H 0.04 0.55 7.86 -51.92 -0.41 0.14 16 45 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 46 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 47 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.05 0.45 7.10 -51.93 -0.37 0.08 16 50 H 0.09 1.02 7.68 -51.93 -0.40 0.63 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -35.58 392.11 -8.86 -44.43 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.20 Total: 10.98 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.69 Total: 6.24 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.67 Total: -55.22 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.49 Total: -26.90 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.58 -8.86 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733396451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.376 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds