Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 110.27363 * 2 1 4 4 C 1.34777 * 119.99786 * 300.70489 * 3 2 1 5 5 O 1.21284 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00218 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09000 * 110.28285 * 304.36501 * 7 6 4 9 9 C 1.55503 * 110.36774 * 182.25172 * 7 6 4 10 10 C 1.55305 * 100.69731 * 204.61167 * 9 7 6 11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7 12 12 O 1.43232 * 107.59109 * 338.54226 * 11 10 9 13 13 C 1.54597 * 110.31008 * 237.91069 * 2 1 3 14 14 C 1.54936 * 102.92026 * 219.02586 * 13 2 1 15 15 N 1.48526 * 103.23136 * 37.41349 * 14 13 2 16 16 C 1.46901 * 111.00218 * 200.28098 * 15 14 13 17 17 C 1.50702 * 109.46785 * 290.12367 * 16 15 14 18 18 O 1.21285 * 119.99964 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99726 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00070 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99696 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99852 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99774 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00298 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47228 * 90.00562 * 24 22 20 26 26 H 1.48499 * 109.47396 * 210.00306 * 24 22 20 27 27 H 1.48495 * 109.47517 * 330.00179 * 24 22 20 28 28 C 1.48125 * 105.86337 * 320.82985 * 15 14 13 29 29 H 1.08992 * 109.47367 * 59.30164 * 1 2 3 30 30 H 1.08999 * 109.46954 * 179.30449 * 1 2 3 31 31 H 1.09008 * 109.46874 * 299.29747 * 1 2 3 32 32 H 0.96996 * 120.00534 * 120.70197 * 3 2 1 33 33 H 1.09004 * 109.46993 * 60.00108 * 6 4 3 34 34 H 1.08997 * 109.47152 * 300.00147 * 6 4 3 35 35 H 1.09007 * 111.32681 * 86.73766 * 9 7 6 36 36 H 1.08995 * 111.14910 * 322.41529 * 9 7 6 37 37 H 1.09002 * 110.85041 * 275.83884 * 10 9 7 38 38 H 1.09001 * 110.84389 * 152.42021 * 10 9 7 39 39 H 1.09009 * 109.82643 * 98.05629 * 11 10 9 40 40 H 1.08995 * 109.83122 * 219.02553 * 11 10 9 41 41 H 1.08999 * 110.72360 * 337.38247 * 13 2 1 42 42 H 1.09006 * 110.72193 * 100.49029 * 13 2 1 43 43 H 1.09003 * 110.66315 * 155.85346 * 14 13 2 44 44 H 1.09007 * 110.66244 * 278.80797 * 14 13 2 45 45 H 1.09007 * 109.47064 * 50.12487 * 16 15 14 46 46 H 1.08995 * 109.46998 * 170.12414 * 16 15 14 47 47 H 0.97005 * 119.99948 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00283 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.94522 * 265.95022 * 28 15 14 50 50 H 1.09002 * 110.00061 * 144.58668 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.7120 2.2129 -1.0036 5 8 0.9992 1.8297 -1.9069 6 6 2.2337 3.6267 -1.0034 7 6 1.7201 4.3600 -2.2440 8 1 1.9939 3.8134 -3.1465 9 6 2.2923 5.8051 -2.2943 10 6 1.2117 6.5133 -3.1560 11 6 -0.0822 5.7873 -2.7291 12 8 0.2946 4.5224 -2.1728 13 6 2.0666 -0.7702 -1.2283 14 6 3.2871 -1.5321 -0.6535 15 7 2.8347 -1.9220 0.7065 16 6 3.9797 -2.2232 1.5760 17 6 4.6307 -3.5048 1.1233 18 8 4.1850 -4.1075 0.1699 19 7 5.7088 -3.9805 1.7774 20 6 6.3014 -5.1461 1.3653 21 1 5.9041 -5.6833 0.5169 22 6 7.4126 -5.6368 2.0399 23 7 7.9809 -6.7538 1.6446 24 14 8.0995 -4.7081 3.5079 25 1 7.4426 -5.1895 4.7497 26 1 9.5632 -4.9407 3.6001 27 1 7.8387 -3.2558 3.3410 28 6 2.0646 -0.7671 1.2236 29 1 -0.3634 0.5246 -0.8836 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.6080 1.6807 0.7222 33 1 3.3235 3.6119 -1.0158 34 1 1.8875 4.1416 -0.1072 35 1 3.2649 5.8294 -2.7859 36 1 2.3474 6.2411 -1.2969 37 1 1.4058 6.3674 -4.2186 38 1 1.1582 7.5751 -2.9153 39 1 -0.6081 6.3790 -1.9797 40 1 -0.7234 5.6334 -3.5970 41 1 1.3179 -1.4681 -1.6033 42 1 2.3745 -0.0788 -2.0128 43 1 3.5069 -2.4150 -1.2537 44 1 4.1579 -0.8786 -0.5995 45 1 4.7024 -1.4091 1.5202 46 1 3.6357 -2.3339 2.6043 47 1 6.0655 -3.4982 2.5397 48 1 8.7564 -7.0966 2.1157 49 1 2.7149 -0.1202 1.8124 50 1 1.2327 -1.1173 1.8348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733396451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = -132.035516 kcal Electronic energy + Delta-G solvation = -29947.608157 eV Core-core repulsion = 25780.805976 eV Total energy + Delta-G solvation = -4166.802181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59566 -40.57659 -40.01604 -38.88212 -36.09193 -35.43031 -33.76314 -33.56106 -32.88790 -32.03588 -30.72090 -29.00345 -27.60537 -26.81072 -25.25970 -23.28263 -22.65688 -22.35384 -21.29272 -21.24610 -20.53949 -20.13310 -18.26446 -17.86793 -17.61501 -17.32949 -16.82666 -16.55693 -16.41664 -16.13816 -15.94097 -15.76829 -15.32096 -15.04606 -14.83512 -14.68817 -14.41835 -14.20507 -14.10279 -14.04567 -13.65585 -13.52875 -13.28833 -13.00311 -12.92516 -12.88690 -12.59949 -12.43467 -12.36136 -12.34133 -12.12063 -12.08490 -11.98064 -11.96360 -11.82670 -11.66435 -11.47527 -10.57257 -10.42520 -10.38365 -10.22645 -10.01325 -9.32905 -8.39551 -6.00579 1.30644 1.37455 1.45966 1.78053 1.98693 2.16080 2.24798 2.69847 2.92834 3.15661 3.23544 3.46098 3.58887 3.69651 3.76205 3.93297 3.95612 4.02704 4.19448 4.21170 4.22641 4.29371 4.31160 4.39966 4.47737 4.52930 4.58258 4.66326 4.71632 4.80975 4.82173 4.85243 4.89101 4.92771 4.96588 5.03007 5.07775 5.09967 5.12610 5.29072 5.32553 5.53861 5.59468 5.86064 5.94153 6.04923 6.19056 6.61756 6.67583 6.90751 7.41064 7.42015 8.00583 8.78331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002017 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.102378 B =13877.974943 C =14425.061055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 N -0.713 5.713 4 C 0.508 3.492 5 O -0.565 6.565 6 C -0.135 4.135 7 C 0.088 3.912 8 H 0.053 0.947 9 C -0.143 4.143 10 C -0.153 4.153 11 C 0.039 3.961 12 O -0.400 6.400 13 C -0.113 4.113 14 C 0.045 3.955 15 N -0.516 5.516 16 C 0.046 3.954 17 C 0.450 3.550 18 O -0.609 6.609 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.968 3.032 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.228 1.228 28 C 0.042 3.958 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.414 0.586 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.126 0.874 47 H 0.390 0.610 48 H 0.278 0.722 49 H 0.083 0.917 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.380 33.711 1.932 35.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.086 3.914 3 N -0.368 5.368 4 C 0.296 3.704 5 O -0.443 6.443 6 C -0.174 4.174 7 C 0.030 3.970 8 H 0.071 0.929 9 C -0.181 4.181 10 C -0.190 4.190 11 C -0.038 4.038 12 O -0.320 6.320 13 C -0.152 4.152 14 C -0.082 4.082 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.238 3.762 18 O -0.492 6.492 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.070 0.930 22 C -0.217 4.217 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.151 1.151 28 C -0.086 4.086 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.252 0.748 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.500 32.256 0.746 34.253 hybrid contribution 1.411 0.220 0.385 1.479 sum -10.089 32.476 1.130 34.026 Atomic orbital electron populations 1.22069 0.93364 1.02426 1.02738 1.20932 0.94493 0.81488 0.94526 1.46149 1.52881 1.11087 1.26639 1.21141 0.79801 0.88284 0.81177 1.90709 1.38066 1.78141 1.37402 1.21945 1.03887 0.90853 1.00728 1.22881 0.80808 0.96445 0.96838 0.92899 1.23418 0.99734 0.92688 1.02223 1.23119 0.93591 1.01521 1.00806 1.23277 0.97781 0.84487 0.98209 1.88520 1.23054 1.37477 1.82913 1.22713 0.96950 0.98033 0.97526 1.23115 0.96442 0.97999 0.90676 1.64467 1.20816 1.36816 1.01942 1.22056 0.93213 0.93991 0.99232 1.20937 0.81660 0.88852 0.84780 1.90546 1.65225 1.62341 1.31129 1.42009 1.28034 1.22796 1.30589 1.18979 1.11454 1.00348 1.14847 0.92992 1.26162 0.96232 0.97193 1.02073 1.69816 1.22879 1.22268 1.42798 0.85329 0.78279 0.80085 0.77572 1.18121 1.20186 1.15147 1.23292 0.99080 0.90684 0.95536 0.92581 0.91746 0.91045 0.74842 0.84744 0.86148 0.88225 0.88528 0.90631 0.88054 0.90539 0.92299 0.91723 0.91281 0.92700 0.93365 0.89705 0.85594 0.77444 0.91214 0.89857 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.14 71.98 0.59 -2.72 16 2 C 0.17 3.68 0.94 4.48 0.00 3.69 16 3 N -0.71 -11.40 5.15 -418.95 -2.16 -13.56 16 4 C 0.51 10.05 6.92 87.66 0.61 10.66 16 5 O -0.57 -16.71 12.40 8.32 0.10 -16.60 16 6 C -0.13 -1.54 5.46 29.85 0.16 -1.37 16 7 C 0.09 1.36 2.93 31.45 0.09 1.45 16 8 H 0.05 1.05 8.00 -2.39 -0.02 1.03 16 9 C -0.14 -1.12 6.61 32.25 0.21 -0.91 16 10 C -0.15 -1.31 7.00 31.86 0.22 -1.09 16 11 C 0.04 0.55 7.80 72.45 0.56 1.11 16 12 O -0.40 -8.53 10.41 -137.62 -1.43 -9.96 16 13 C -0.11 -3.21 5.83 31.80 0.19 -3.02 16 14 C 0.05 1.45 5.86 86.65 0.51 1.96 16 15 N -0.52 -15.40 4.96 -886.95 -4.40 -19.79 16 16 C 0.05 1.36 5.19 85.56 0.44 1.81 16 17 C 0.45 20.28 7.58 87.66 0.66 20.95 16 18 O -0.61 -34.26 14.42 -3.04 -0.04 -34.31 16 19 N -0.59 -27.67 5.09 -307.00 -1.56 -29.24 16 20 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 21 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 22 C -0.02 -1.02 5.50 84.92 0.47 -0.56 16 23 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 24 Si 0.97 38.24 27.74 68.60 1.90 40.14 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 28 C 0.04 0.82 6.16 86.40 0.53 1.35 16 29 H 0.06 1.55 6.17 -2.39 -0.01 1.53 16 30 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.41 3.62 8.09 -92.71 -0.75 2.87 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.10 0.46 8.07 -2.39 -0.02 0.44 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 2.03 7.86 -2.39 -0.02 2.02 16 42 H 0.07 2.05 6.68 -2.38 -0.02 2.04 16 43 H 0.05 2.26 6.91 -2.39 -0.02 2.25 16 44 H 0.05 1.40 7.86 -2.38 -0.02 1.38 16 45 H 0.09 1.96 7.90 -2.38 -0.02 1.94 16 46 H 0.13 2.89 8.11 -2.39 -0.02 2.87 16 47 H 0.39 14.79 5.76 -92.70 -0.53 14.26 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.08 1.08 7.10 -2.39 -0.02 1.06 16 50 H 0.10 1.86 7.68 -2.39 -0.02 1.84 16 Total: -1.00 -87.75 392.11 -1.56 -89.31 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.39 Total: 35.56 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.11 Total: 14.93 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -7.81 Total: -119.07 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -1.37 Total: -60.87 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -87.75 -1.56 -89.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733396451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.724 kcal (2) G-P(sol) polarization free energy of solvation -87.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds