Wall clock time and date at job start Sat Apr 11 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00576 * 2 1 4 4 H 1.48493 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46653 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.46863 * 59.99687 * 3 2 1 7 7 C 1.38814 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00405 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99980 * 174.41871 * 9 7 2 11 11 C 1.52998 * 109.53960 * 62.15715 * 10 9 7 12 12 N 1.46496 * 109.47581 * 54.85561 * 11 10 9 13 13 C 1.34779 * 120.00518 * 176.57520 * 12 11 10 14 14 O 1.21282 * 119.99598 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00067 * 179.97438 * 13 12 11 16 16 H 1.08992 * 108.56763 * 297.93379 * 15 13 12 17 17 C 1.51774 * 108.61424 * 55.73778 * 15 13 12 18 18 C 1.53037 * 110.87111 * 188.11826 * 17 15 13 19 19 N 1.47190 * 108.64620 * 273.52648 * 18 17 15 20 20 C 1.33367 * 120.43018 * 71.98896 * 19 18 17 21 21 O 1.21275 * 119.89835 * 179.65703 * 20 19 18 22 22 C 1.51425 * 120.21325 * 359.67969 * 20 19 18 23 23 C 1.51794 * 108.61185 * 179.97438 * 15 13 12 24 24 C 1.53178 * 109.54402 * 301.88881 * 10 9 7 25 25 C 1.53090 * 109.16288 * 297.11261 * 24 10 9 26 26 O 1.42897 * 109.41462 * 302.39149 * 25 24 10 27 27 C 1.42900 * 114.09927 * 61.15840 * 26 25 24 28 28 C 1.53087 * 109.41860 * 298.84175 * 27 26 25 29 29 H 0.96999 * 119.98979 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00016 * 354.15033 * 9 7 2 31 31 H 1.09003 * 109.47151 * 174.85337 * 11 10 9 32 32 H 1.09000 * 109.47367 * 294.85345 * 11 10 9 33 33 H 0.97003 * 119.99752 * 356.57140 * 12 11 10 34 34 H 1.08997 * 109.19962 * 308.47302 * 17 15 13 35 35 H 1.09000 * 109.20083 * 67.75772 * 17 15 13 36 36 H 1.09003 * 109.61657 * 153.77865 * 18 17 15 37 37 H 1.08999 * 109.74649 * 33.35656 * 18 17 15 38 38 H 0.96992 * 119.78369 * 251.97071 * 19 18 17 39 39 H 1.09004 * 109.63619 * 169.08004 * 22 20 19 40 40 H 1.08997 * 109.63645 * 48.48252 * 22 20 19 41 41 H 1.08999 * 109.22742 * 292.39276 * 23 15 13 42 42 H 1.09003 * 109.22186 * 51.74613 * 23 15 13 43 43 H 1.09003 * 109.51975 * 57.01859 * 24 10 9 44 44 H 1.09003 * 109.51813 * 177.20684 * 24 10 9 45 45 H 1.09004 * 109.47682 * 182.41027 * 25 24 10 46 46 H 1.09000 * 109.49214 * 62.38346 * 25 24 10 47 47 H 1.09002 * 109.48791 * 178.85538 * 27 26 25 48 48 H 1.09000 * 109.48884 * 58.82971 * 27 26 25 49 49 H 1.09002 * 109.52304 * 297.70103 * 28 27 26 50 50 H 1.08993 * 109.58016 * 177.54275 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0527 -3.6540 -0.1212 11 6 2.9964 -3.8198 1.0716 12 7 2.2348 -3.7001 2.3173 13 6 2.8493 -3.8814 3.5030 14 8 4.0328 -4.1442 3.5387 15 6 2.0658 -3.7577 4.7844 16 1 1.6820 -2.7404 4.8597 17 6 0.8885 -4.7138 4.7266 18 6 -0.0546 -4.4895 5.9108 19 7 0.4243 -5.2871 7.0514 20 6 1.5294 -4.9314 7.7079 21 8 1.9118 -5.5921 8.6502 22 6 2.3079 -3.7049 7.2807 23 6 3.0030 -4.0102 5.9515 24 6 2.8622 -3.6558 -1.4216 25 6 1.9025 -3.5675 -2.6111 26 8 0.9834 -4.6606 -2.5621 27 6 0.1660 -4.6835 -1.3901 28 6 1.0558 -4.8167 -0.1515 29 1 -0.4848 0.8401 0.0004 30 1 0.3593 -2.3902 0.0876 31 1 3.4687 -4.8012 1.0275 32 1 3.7631 -3.0457 1.0387 33 1 1.2881 -3.4903 2.2887 34 1 0.3416 -4.5532 3.7976 35 1 1.2576 -5.7390 4.7516 36 1 -1.0624 -4.8054 5.6410 37 1 -0.0624 -3.4334 6.1805 38 1 -0.0672 -6.0763 7.3276 39 1 3.0544 -3.4630 8.0373 40 1 1.6260 -2.8642 7.1530 41 1 3.3158 -5.0543 5.9413 42 1 3.8811 -3.3722 5.8512 43 1 3.5357 -2.7988 -1.4326 44 1 3.4416 -4.5767 -1.4886 45 1 2.4705 -3.6116 -3.5404 46 1 1.3523 -2.6276 -2.5656 47 1 -0.5171 -5.5315 -1.4397 48 1 -0.4070 -3.7584 -1.3282 49 1 1.5988 -5.7609 -0.1929 50 1 0.4384 -4.7906 0.7463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733471688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:27 Heat of formation + Delta-G solvation = -121.011165 kcal Electronic energy + Delta-G solvation = -31515.984916 eV Core-core repulsion = 27349.660787 eV Total energy + Delta-G solvation = -4166.324129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65311 -39.65840 -38.90226 -36.59514 -35.86255 -33.92542 -33.59608 -32.31896 -31.24195 -30.69720 -29.25172 -27.77346 -26.40418 -24.27400 -24.09566 -23.12600 -22.41410 -21.40640 -20.00587 -19.63723 -18.69183 -17.69905 -17.32079 -17.23933 -16.49037 -15.78421 -15.70552 -15.42247 -15.21172 -14.97553 -14.59550 -14.37396 -14.15145 -13.97250 -13.90756 -13.69917 -13.49296 -13.20804 -12.87339 -12.69823 -12.48047 -12.24466 -12.06686 -11.87392 -11.78059 -11.62736 -11.50114 -11.03154 -10.99923 -10.97063 -10.89413 -10.83825 -10.39577 -10.08452 -9.92043 -9.83612 -9.76997 -9.59390 -9.29107 -9.24602 -8.84992 -8.54108 -7.18435 -5.95434 -3.25951 2.50079 2.93693 3.09862 3.31468 3.40225 3.40543 3.52507 4.30042 4.33433 4.43718 4.49237 4.50190 4.61896 4.96471 5.06367 5.10218 5.14884 5.17742 5.21333 5.29597 5.34559 5.35505 5.45596 5.49180 5.56837 5.59208 5.69133 5.72750 5.81933 5.94867 6.00094 6.02318 6.05426 6.13038 6.16738 6.25882 6.36338 6.48646 6.51061 6.58564 6.67291 6.73399 6.93252 7.03760 7.58012 7.67449 7.93784 8.06230 8.21798 8.58373 9.34876 9.84615 10.21502 11.26159 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.003525 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.126700 B = 7941.774494 C = 9147.366803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.005 4.005 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.189 3.811 11 C 0.117 3.883 12 N -0.699 5.699 13 C 0.511 3.489 14 O -0.554 6.554 15 C -0.109 4.109 16 H 0.101 0.899 17 C -0.134 4.134 18 C 0.109 3.891 19 N -0.725 5.725 20 C 0.519 3.481 21 O -0.557 6.557 22 C -0.139 4.139 23 C -0.092 4.092 24 C -0.152 4.152 25 C 0.070 3.930 26 O -0.393 6.393 27 C 0.066 3.934 28 C -0.150 4.150 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.399 0.601 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -9.003 6.313 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.009 4.009 12 N -0.349 5.349 13 C 0.296 3.704 14 O -0.433 6.433 15 C -0.130 4.130 16 H 0.119 0.881 17 C -0.173 4.173 18 C -0.015 4.015 19 N -0.377 5.377 20 C 0.306 3.694 21 O -0.435 6.435 22 C -0.180 4.180 23 C -0.131 4.131 24 C -0.193 4.193 25 C -0.007 4.007 26 O -0.312 6.312 27 C -0.011 4.011 28 C -0.188 4.188 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.238 0.762 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.235 0.765 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.421 -9.325 6.568 11.494 hybrid contribution -0.463 1.193 0.175 1.292 sum -1.883 -8.132 6.742 10.730 Atomic orbital electron populations 1.69650 1.05004 1.25687 1.57333 1.24681 0.95396 0.97499 1.02534 0.86223 0.79017 0.84368 0.77207 1.20568 1.21868 1.21928 1.19107 0.91023 0.83615 1.42968 0.91156 1.42486 1.06111 0.99478 1.87423 1.19828 0.91313 0.87313 0.91813 1.21808 0.95036 1.00106 0.83956 1.45778 1.13799 1.70043 1.05317 1.20444 0.87769 0.76941 0.85226 1.90670 1.15913 1.49130 1.87565 1.21017 0.96186 1.02111 0.93725 0.88138 1.21852 0.95713 1.00411 0.99323 1.21810 0.97862 0.96748 0.85081 1.45980 1.27555 1.30751 1.33425 1.20660 0.80445 0.86772 0.81495 1.90743 1.68316 1.55446 1.28989 1.22036 1.00312 0.95988 0.99621 1.21014 0.98046 1.03834 0.90171 1.22451 0.98936 1.01544 0.96336 1.22452 0.90842 0.90254 0.97107 1.87798 1.52435 1.49608 1.41374 1.22457 0.92388 1.01624 0.84645 1.22341 0.98946 0.98699 0.98827 0.93507 0.78110 0.92829 0.91725 0.76194 0.89674 0.90523 0.88903 0.89984 0.76509 0.88183 0.89005 0.91015 0.89379 0.90449 0.92669 0.90395 0.91218 0.90123 0.92188 0.91286 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.62 13.07 55.49 0.73 -23.89 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.90 20.73 29.55 -169.99 -5.02 15.70 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.24 -5.54 8.67 -15.06 -0.13 -5.67 16 8 H 0.07 1.69 6.78 -52.49 -0.36 1.34 16 9 N -0.71 -14.17 3.61 -47.06 -0.17 -14.34 16 10 C 0.19 3.10 0.41 -131.63 -0.05 3.05 16 11 C 0.12 1.95 4.37 -4.04 -0.02 1.93 16 12 N -0.70 -10.46 4.93 -60.30 -0.30 -10.76 16 13 C 0.51 7.71 7.14 -10.98 -0.08 7.63 16 14 O -0.55 -10.43 15.75 5.56 0.09 -10.34 16 15 C -0.11 -1.19 2.05 -93.01 -0.19 -1.38 16 16 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 17 C -0.13 -1.12 4.94 -27.33 -0.14 -1.25 16 18 C 0.11 0.70 6.46 -3.65 -0.02 0.68 16 19 N -0.72 -6.08 5.27 -59.88 -0.32 -6.39 16 20 C 0.52 5.98 7.06 -11.26 -0.08 5.90 16 21 O -0.56 -8.78 17.92 5.56 0.10 -8.68 16 22 C -0.14 -1.35 5.58 -27.49 -0.15 -1.50 16 23 C -0.09 -1.04 4.31 -27.31 -0.12 -1.16 16 24 C -0.15 -2.51 4.79 -26.59 -0.13 -2.63 16 25 C 0.07 1.17 6.68 37.20 0.25 1.42 16 26 O -0.39 -6.55 10.76 -35.23 -0.38 -6.93 16 27 C 0.07 0.97 6.67 37.20 0.25 1.22 16 28 C -0.15 -2.09 4.79 -26.59 -0.13 -2.22 16 29 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.38 8.19 6.82 -40.82 -0.28 7.91 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.25 7.47 -51.93 -0.39 0.86 16 33 H 0.40 5.65 6.41 -40.82 -0.26 5.39 16 34 H 0.08 0.65 6.96 -51.93 -0.36 0.29 16 35 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.49 6.72 -51.93 -0.35 0.14 16 38 H 0.40 2.94 8.91 -40.82 -0.36 2.57 16 39 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 40 H 0.09 0.70 6.77 -51.93 -0.35 0.35 16 41 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 42 H 0.09 1.08 7.75 -51.93 -0.40 0.68 16 43 H 0.08 1.37 7.20 -51.93 -0.37 1.00 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.36 7.75 -51.93 -0.40 0.95 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.99 7.15 -51.93 -0.37 0.62 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.85 7.37 -51.93 -0.38 0.47 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -31.16 384.74 -8.28 -39.45 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -7.97 Total: 14.60 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.83 Total: 5.79 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.06 Total: -55.39 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.19 Total: -25.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.16 -8.28 -39.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.566 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds