Wall clock time and date at job start Sat Apr 11 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00576 * 2 1 4 4 H 1.48493 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46653 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.46863 * 59.99687 * 3 2 1 7 7 C 1.38814 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00405 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99980 * 174.41871 * 9 7 2 11 11 C 1.52998 * 109.53960 * 62.15715 * 10 9 7 12 12 N 1.46496 * 109.47581 * 54.85561 * 11 10 9 13 13 C 1.34779 * 120.00518 * 176.57520 * 12 11 10 14 14 O 1.21282 * 119.99598 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00067 * 179.97438 * 13 12 11 16 16 H 1.08992 * 108.56763 * 297.93379 * 15 13 12 17 17 C 1.51774 * 108.61424 * 55.73778 * 15 13 12 18 18 C 1.53037 * 110.87111 * 188.11826 * 17 15 13 19 19 N 1.47190 * 108.64620 * 273.52648 * 18 17 15 20 20 C 1.33367 * 120.43018 * 71.98896 * 19 18 17 21 21 O 1.21275 * 119.89835 * 179.65703 * 20 19 18 22 22 C 1.51425 * 120.21325 * 359.67969 * 20 19 18 23 23 C 1.51794 * 108.61185 * 179.97438 * 15 13 12 24 24 C 1.53178 * 109.54402 * 301.88881 * 10 9 7 25 25 C 1.53090 * 109.16288 * 297.11261 * 24 10 9 26 26 O 1.42897 * 109.41462 * 302.39149 * 25 24 10 27 27 C 1.42900 * 114.09927 * 61.15840 * 26 25 24 28 28 C 1.53087 * 109.41860 * 298.84175 * 27 26 25 29 29 H 0.96999 * 119.98979 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00016 * 354.15033 * 9 7 2 31 31 H 1.09003 * 109.47151 * 174.85337 * 11 10 9 32 32 H 1.09000 * 109.47367 * 294.85345 * 11 10 9 33 33 H 0.97003 * 119.99752 * 356.57140 * 12 11 10 34 34 H 1.08997 * 109.19962 * 308.47302 * 17 15 13 35 35 H 1.09000 * 109.20083 * 67.75772 * 17 15 13 36 36 H 1.09003 * 109.61657 * 153.77865 * 18 17 15 37 37 H 1.08999 * 109.74649 * 33.35656 * 18 17 15 38 38 H 0.96992 * 119.78369 * 251.97071 * 19 18 17 39 39 H 1.09004 * 109.63619 * 169.08004 * 22 20 19 40 40 H 1.08997 * 109.63645 * 48.48252 * 22 20 19 41 41 H 1.08999 * 109.22742 * 292.39276 * 23 15 13 42 42 H 1.09003 * 109.22186 * 51.74613 * 23 15 13 43 43 H 1.09003 * 109.51975 * 57.01859 * 24 10 9 44 44 H 1.09003 * 109.51813 * 177.20684 * 24 10 9 45 45 H 1.09004 * 109.47682 * 182.41027 * 25 24 10 46 46 H 1.09000 * 109.49214 * 62.38346 * 25 24 10 47 47 H 1.09002 * 109.48791 * 178.85538 * 27 26 25 48 48 H 1.09000 * 109.48884 * 58.82971 * 27 26 25 49 49 H 1.09002 * 109.52304 * 297.70103 * 28 27 26 50 50 H 1.08993 * 109.58016 * 177.54275 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0527 -3.6540 -0.1212 11 6 2.9964 -3.8198 1.0716 12 7 2.2348 -3.7001 2.3173 13 6 2.8493 -3.8814 3.5030 14 8 4.0328 -4.1442 3.5387 15 6 2.0658 -3.7577 4.7844 16 1 1.6820 -2.7404 4.8597 17 6 0.8885 -4.7138 4.7266 18 6 -0.0546 -4.4895 5.9108 19 7 0.4243 -5.2871 7.0514 20 6 1.5294 -4.9314 7.7079 21 8 1.9118 -5.5921 8.6502 22 6 2.3079 -3.7049 7.2807 23 6 3.0030 -4.0102 5.9515 24 6 2.8622 -3.6558 -1.4216 25 6 1.9025 -3.5675 -2.6111 26 8 0.9834 -4.6606 -2.5621 27 6 0.1660 -4.6835 -1.3901 28 6 1.0558 -4.8167 -0.1515 29 1 -0.4848 0.8401 0.0004 30 1 0.3593 -2.3902 0.0876 31 1 3.4687 -4.8012 1.0275 32 1 3.7631 -3.0457 1.0387 33 1 1.2881 -3.4903 2.2887 34 1 0.3416 -4.5532 3.7976 35 1 1.2576 -5.7390 4.7516 36 1 -1.0624 -4.8054 5.6410 37 1 -0.0624 -3.4334 6.1805 38 1 -0.0672 -6.0763 7.3276 39 1 3.0544 -3.4630 8.0373 40 1 1.6260 -2.8642 7.1530 41 1 3.3158 -5.0543 5.9413 42 1 3.8811 -3.3722 5.8512 43 1 3.5357 -2.7988 -1.4326 44 1 3.4416 -4.5767 -1.4886 45 1 2.4705 -3.6116 -3.5404 46 1 1.3523 -2.6276 -2.5656 47 1 -0.5171 -5.5315 -1.4397 48 1 -0.4070 -3.7584 -1.3282 49 1 1.5988 -5.7609 -0.1929 50 1 0.4384 -4.7906 0.7463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733471688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:26 Heat of formation + Delta-G solvation = -144.634522 kcal Electronic energy + Delta-G solvation = -31517.009302 eV Core-core repulsion = 27349.660787 eV Total energy + Delta-G solvation = -4167.348515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63495 -40.86073 -40.11661 -37.58711 -37.20087 -35.11907 -34.78508 -33.85763 -32.12901 -31.95341 -30.92162 -28.78342 -27.49174 -25.91724 -25.04691 -24.41737 -23.60390 -22.46621 -20.95432 -20.59995 -20.07617 -19.10319 -18.61448 -18.12843 -17.46437 -17.16950 -16.98807 -16.70984 -16.31102 -16.25760 -15.89570 -15.70120 -15.36676 -15.33699 -14.98137 -14.79857 -14.52789 -14.34675 -14.12919 -13.68058 -13.58912 -13.44537 -13.23653 -13.12663 -12.91775 -12.86160 -12.79054 -12.65805 -12.43366 -12.19000 -12.07087 -11.88784 -11.73448 -11.67392 -11.38436 -11.11494 -10.99918 -10.85350 -10.75792 -10.30348 -10.10170 -9.85976 -8.94716 -7.89067 -5.14716 1.45554 1.51607 1.55688 1.61478 1.74557 2.34436 2.41263 2.58691 3.09899 3.44301 3.50461 3.61024 3.73492 3.77645 3.82551 3.91024 4.01506 4.17780 4.20440 4.26056 4.32550 4.42467 4.49984 4.50366 4.51126 4.63330 4.68024 4.74555 4.79900 4.83551 4.86181 4.91565 5.00346 5.04193 5.06592 5.12215 5.20515 5.24281 5.24979 5.30046 5.37088 5.61573 5.66948 5.91680 6.27450 6.33288 6.39316 6.72130 7.25306 7.37335 7.43595 8.11012 8.39424 9.32793 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.003525 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.126700 B = 7941.774494 C = 9147.366803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.054 4.054 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.298 1.298 7 C -0.212 4.212 8 H 0.062 0.938 9 N -0.710 5.710 10 C 0.189 3.811 11 C 0.125 3.875 12 N -0.694 5.694 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.101 4.101 16 H 0.118 0.882 17 C -0.129 4.129 18 C 0.110 3.890 19 N -0.712 5.712 20 C 0.515 3.485 21 O -0.608 6.608 22 C -0.131 4.131 23 C -0.086 4.086 24 C -0.151 4.151 25 C 0.076 3.924 26 O -0.399 6.399 27 C 0.063 3.937 28 C -0.141 4.141 29 H 0.248 0.752 30 H 0.379 0.621 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.409 0.591 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.405 0.595 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.036 0.964 47 H 0.112 0.888 48 H 0.039 0.961 49 H 0.084 0.916 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -10.039 6.454 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.247 4.247 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.225 1.225 7 C -0.344 4.344 8 H 0.080 0.920 9 N -0.351 5.351 10 C 0.098 3.902 11 C -0.002 4.002 12 N -0.344 5.344 13 C 0.293 3.707 14 O -0.477 6.477 15 C -0.122 4.122 16 H 0.136 0.864 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.363 5.363 20 C 0.302 3.698 21 O -0.490 6.490 22 C -0.171 4.171 23 C -0.124 4.124 24 C -0.191 4.191 25 C -0.001 4.001 26 O -0.318 6.318 27 C -0.013 4.013 28 C -0.179 4.179 29 H 0.057 0.943 30 H 0.213 0.787 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.246 0.754 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.242 0.758 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.130 0.870 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.839 -10.381 6.679 12.666 hybrid contribution 0.029 1.437 0.061 1.438 sum -2.809 -8.944 6.740 11.546 Atomic orbital electron populations 1.69734 1.05677 1.25375 1.59736 1.25093 0.95901 0.99358 1.04338 0.85528 0.78219 0.82328 0.76352 1.20455 1.22837 1.22521 1.19187 0.90712 0.84765 1.39783 0.91967 1.42471 1.05827 0.99798 1.87049 1.19983 0.91787 0.86833 0.91600 1.21608 0.94483 0.99332 0.84738 1.45739 1.13947 1.69826 1.04912 1.21217 0.87515 0.75607 0.86337 1.90654 1.17960 1.50927 1.88192 1.21063 0.96362 1.03920 0.90815 0.86420 1.21851 0.94940 0.98987 1.01035 1.22029 0.98628 0.97425 0.83259 1.45987 1.26395 1.30808 1.33077 1.20941 0.81032 0.86776 0.81023 1.90720 1.69869 1.57030 1.31415 1.21982 1.00581 0.96230 0.98318 1.20895 0.97943 1.02182 0.91382 1.22430 0.98748 1.01742 0.96230 1.22345 0.90651 0.88986 0.98086 1.87799 1.52513 1.49069 1.42451 1.22605 0.92490 1.01943 0.84296 1.22298 0.98421 0.97801 0.99407 0.94300 0.78659 0.92104 0.94930 0.75357 0.88282 0.91459 0.85637 0.88566 0.75798 0.88369 0.86195 0.93085 0.90855 0.92260 0.90702 0.88627 0.94524 0.87047 0.94256 0.89698 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -50.66 13.07 21.65 0.28 -50.38 16 2 C -0.05 -2.70 5.50 84.86 0.47 -2.23 16 3 Si 0.94 42.88 29.55 68.60 2.03 44.90 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.21 -9.92 8.67 84.03 0.73 -9.19 16 8 H 0.06 3.01 6.78 -2.91 -0.02 2.99 16 9 N -0.71 -27.70 3.61 -302.79 -1.09 -28.79 16 10 C 0.19 5.91 0.41 3.72 0.00 5.91 16 11 C 0.13 4.03 4.37 86.38 0.38 4.41 16 12 N -0.69 -19.68 4.93 -463.06 -2.28 -21.96 16 13 C 0.51 14.74 7.14 87.66 0.63 15.37 16 14 O -0.60 -22.51 15.75 -3.03 -0.05 -22.56 16 15 C -0.10 -1.99 2.05 -12.34 -0.03 -2.01 16 16 H 0.12 1.99 7.88 -2.39 -0.02 1.97 16 17 C -0.13 -1.75 4.94 30.20 0.15 -1.60 16 18 C 0.11 0.97 6.46 86.26 0.56 1.53 16 19 N -0.71 -10.15 5.27 -462.54 -2.44 -12.59 16 20 C 0.51 11.19 7.06 88.11 0.62 11.82 16 21 O -0.61 -19.17 17.92 -3.01 -0.05 -19.22 16 22 C -0.13 -2.34 5.58 30.10 0.17 -2.17 16 23 C -0.09 -1.87 4.31 30.22 0.13 -1.74 16 24 C -0.15 -4.81 4.79 30.68 0.15 -4.66 16 25 C 0.08 2.46 6.68 72.01 0.48 2.94 16 26 O -0.40 -12.45 10.76 -148.98 -1.60 -14.05 16 27 C 0.06 1.70 6.67 72.01 0.48 2.18 16 28 C -0.14 -3.52 4.79 30.68 0.15 -3.37 16 29 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 30 H 0.38 15.81 6.82 -92.71 -0.63 15.18 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 1.26 7.47 -2.39 -0.02 1.24 16 33 H 0.41 10.49 6.41 -92.71 -0.59 9.90 16 34 H 0.10 1.12 6.96 -2.39 -0.02 1.10 16 35 H 0.07 1.08 8.05 -2.39 -0.02 1.07 16 36 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 0.68 6.72 -2.39 -0.02 0.66 16 38 H 0.41 5.01 8.91 -92.71 -0.83 4.18 16 39 H 0.10 1.81 8.13 -2.38 -0.02 1.79 16 40 H 0.12 1.45 6.77 -2.39 -0.02 1.44 16 41 H 0.05 1.32 7.86 -2.39 -0.02 1.30 16 42 H 0.07 1.82 7.75 -2.39 -0.02 1.80 16 43 H 0.06 2.09 7.20 -2.39 -0.02 2.07 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 45 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 46 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 47 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.04 1.23 7.15 -2.39 -0.02 1.22 16 49 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.09 1.86 7.37 -2.39 -0.02 1.84 16 Total: -1.00 -69.47 384.74 -1.22 -70.69 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.07 Total: 36.78 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 5.06 Total: 17.18 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -5.53 Total: -113.72 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -1.71 Total: -55.84 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.47 -1.22 -70.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.942 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds