Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00495 * 2 1 4 4 H 1.48490 * 109.47334 * 270.00096 * 3 2 1 5 5 H 1.48499 * 109.46834 * 30.00241 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99667 * 3 2 1 7 7 C 1.38819 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99987 * 174.80035 * 9 7 2 11 11 C 1.52998 * 109.54853 * 64.36038 * 10 9 7 12 12 N 1.46508 * 109.47000 * 54.46448 * 11 10 9 13 13 C 1.34777 * 119.99667 * 184.84241 * 12 11 10 14 14 O 1.21281 * 120.00314 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99315 * 180.02562 * 13 12 11 16 16 H 1.09003 * 108.56969 * 297.93497 * 15 13 12 17 17 C 1.51783 * 108.61264 * 180.02562 * 15 13 12 18 18 C 1.52989 * 110.88132 * 171.87496 * 17 15 13 19 19 N 1.47202 * 108.66171 * 86.47079 * 18 17 15 20 20 C 1.33376 * 120.42442 * 288.01667 * 19 18 17 21 21 O 1.21278 * 119.89089 * 180.30941 * 20 19 18 22 22 C 1.51424 * 120.21829 * 0.32914 * 20 19 18 23 23 C 1.51799 * 108.61821 * 55.73854 * 15 13 12 24 24 C 1.53183 * 109.54385 * 184.53955 * 10 9 7 25 25 C 1.53100 * 109.15716 * 63.06135 * 24 10 9 26 26 O 1.42906 * 109.48845 * 57.47209 * 25 24 10 27 27 C 1.42900 * 114.10117 * 298.89109 * 26 25 24 28 28 C 1.53092 * 109.41386 * 61.15435 * 27 26 25 29 29 H 0.97001 * 119.99726 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99896 * 354.79229 * 9 7 2 31 31 H 1.09000 * 109.47314 * 174.46560 * 11 10 9 32 32 H 1.08999 * 109.47020 * 294.46998 * 11 10 9 33 33 H 0.96997 * 119.99713 * 4.84413 * 12 11 10 34 34 H 1.08998 * 109.19610 * 292.23687 * 17 15 13 35 35 H 1.08998 * 109.19543 * 51.51606 * 17 15 13 36 36 H 1.09000 * 109.60480 * 206.21446 * 18 17 15 37 37 H 1.09000 * 109.60773 * 326.71665 * 18 17 15 38 38 H 0.96994 * 119.78977 * 108.04518 * 19 18 17 39 39 H 1.08997 * 109.63640 * 190.91126 * 22 20 19 40 40 H 1.09005 * 109.63541 * 311.30941 * 22 20 19 41 41 H 1.08998 * 109.22204 * 308.25018 * 23 15 13 42 42 H 1.08996 * 109.21938 * 67.60309 * 23 15 13 43 43 H 1.09001 * 109.52126 * 182.87567 * 24 10 9 44 44 H 1.08998 * 109.51827 * 303.06707 * 24 10 9 45 45 H 1.09004 * 109.40933 * 297.49803 * 25 24 10 46 46 H 1.08997 * 109.49311 * 177.51248 * 25 24 10 47 47 H 1.08997 * 109.48146 * 301.17587 * 27 26 25 48 48 H 1.08997 * 109.48916 * 181.14563 * 27 26 25 49 49 H 1.09002 * 109.52106 * 182.48365 * 28 27 26 50 50 H 1.08999 * 109.57367 * 62.32951 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0533 -3.6542 -0.1161 11 6 2.9493 -3.8433 1.1096 12 7 2.1416 -3.7324 2.3268 13 6 2.7363 -3.7680 3.5357 14 8 3.9401 -3.8922 3.6160 15 6 1.9053 -3.6545 4.7877 16 1 1.4075 -2.6848 4.7872 17 6 2.8290 -3.7237 5.9902 18 6 2.0682 -3.4136 7.2807 19 7 1.4652 -4.6589 7.7830 20 6 0.4222 -5.2050 7.1561 21 8 -0.0706 -6.2283 7.5815 22 6 -0.1483 -4.5519 5.9148 23 6 0.8449 -4.7405 4.7656 24 6 1.0552 -4.8128 -0.2047 25 6 0.2177 -4.6582 -1.4770 26 8 1.0817 -4.6177 -2.6146 27 6 2.0038 -3.5260 -2.6083 28 6 2.9146 -3.6363 -1.3827 29 1 -0.4850 0.8401 -0.0004 30 1 0.3585 -2.3898 0.0761 31 1 3.4149 -4.8281 1.0709 32 1 3.7231 -3.0755 1.1158 33 1 1.1788 -3.6334 2.2626 34 1 3.2555 -4.7245 6.0573 35 1 3.6340 -2.9995 5.8658 36 1 2.7578 -3.0152 8.0250 37 1 1.2845 -2.6839 7.0770 38 1 1.8284 -5.0849 8.5750 39 1 -1.0983 -5.0205 5.6581 40 1 -0.3022 -3.4885 6.0982 41 1 0.3090 -4.6995 3.8173 42 1 1.3258 -5.7136 4.8636 43 1 1.5967 -5.7582 -0.2393 44 1 0.4015 -4.7979 0.6674 45 1 -0.3557 -3.7328 -1.4230 46 1 -0.4643 -5.5035 -1.5685 47 1 1.4539 -2.5858 -2.5689 48 1 2.6087 -3.5557 -3.5145 49 1 3.5895 -2.7809 -1.3522 50 1 3.4956 -4.5567 -1.4411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733471689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -120.621084 kcal Electronic energy + Delta-G solvation = -31540.445549 eV Core-core repulsion = 27374.138336 eV Total energy + Delta-G solvation = -4166.307214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64587 -39.63990 -38.88899 -36.57080 -35.79015 -34.20717 -33.43240 -32.16949 -31.23785 -30.67872 -29.22125 -27.95557 -26.18497 -24.29191 -24.13445 -23.12110 -22.40766 -21.32263 -20.00269 -19.68023 -18.67030 -17.63874 -17.30438 -17.23982 -16.51082 -15.77571 -15.70480 -15.38218 -15.22322 -14.94724 -14.48507 -14.35840 -14.25133 -13.95937 -13.82723 -13.71876 -13.46621 -13.25927 -12.81165 -12.61522 -12.41898 -12.27729 -12.05931 -11.91403 -11.77445 -11.66543 -11.46127 -11.01718 -10.97603 -10.95210 -10.90192 -10.82001 -10.39645 -10.06868 -9.95890 -9.79594 -9.74043 -9.46737 -9.31397 -9.25774 -8.82707 -8.53119 -7.15603 -5.92674 -3.22905 2.49032 2.95921 3.11377 3.33196 3.40541 3.41175 3.53559 4.26644 4.35831 4.45672 4.48206 4.57388 4.65384 4.94242 5.03288 5.12279 5.15773 5.19598 5.21462 5.31599 5.36166 5.44456 5.48153 5.49521 5.52016 5.61271 5.75240 5.77294 5.78961 5.96253 5.97574 6.04133 6.07850 6.12310 6.18510 6.27543 6.38384 6.50891 6.53113 6.59210 6.68849 6.75412 6.94488 7.04817 7.59251 7.69839 7.94209 8.06021 8.24330 8.59612 9.37325 9.87573 10.24393 11.28964 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.003615 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.248194 B = 7744.040820 C = 8990.903190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.005 4.005 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.117 3.883 12 N -0.698 5.698 13 C 0.513 3.487 14 O -0.555 6.555 15 C -0.110 4.110 16 H 0.101 0.899 17 C -0.122 4.122 18 C 0.107 3.893 19 N -0.724 5.724 20 C 0.519 3.481 21 O -0.557 6.557 22 C -0.138 4.138 23 C -0.104 4.104 24 C -0.151 4.151 25 C 0.066 3.934 26 O -0.393 6.393 27 C 0.070 3.930 28 C -0.151 4.151 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.399 0.601 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -7.543 8.609 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.097 3.903 11 C -0.010 4.010 12 N -0.348 5.348 13 C 0.298 3.702 14 O -0.434 6.434 15 C -0.131 4.131 16 H 0.119 0.881 17 C -0.161 4.161 18 C -0.017 4.017 19 N -0.376 5.376 20 C 0.306 3.694 21 O -0.435 6.435 22 C -0.178 4.178 23 C -0.142 4.142 24 C -0.189 4.189 25 C -0.011 4.011 26 O -0.312 6.312 27 C -0.007 4.007 28 C -0.192 4.192 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.699 -8.034 8.514 11.828 hybrid contribution 0.040 1.345 0.475 1.427 sum 1.740 -6.689 8.989 11.339 Atomic orbital electron populations 1.69635 1.05002 1.25773 1.57307 1.24673 0.95385 0.97470 1.02608 0.86296 0.78822 0.84114 0.77598 1.21691 1.21858 1.20806 1.19053 0.90961 0.83652 1.42986 0.91249 1.42451 1.05965 0.99402 1.87538 1.19832 0.91399 0.87362 0.91732 1.21846 0.94570 0.99937 0.84631 1.45748 1.11423 1.72404 1.05238 1.20411 0.88353 0.76466 0.84954 1.90659 1.14880 1.50519 1.87315 1.21025 0.96647 1.01483 0.93936 0.88102 1.21628 0.98018 1.04442 0.91978 1.21854 0.97712 0.85772 0.96355 1.46005 1.33157 1.27215 1.31251 1.20626 0.79523 0.84276 0.85013 1.90747 1.60664 1.24799 1.67319 1.21991 1.00320 1.02808 0.92674 1.21215 0.95450 0.98981 0.98560 1.22355 0.99118 0.98719 0.98728 1.22454 0.91867 1.01628 0.85134 1.87798 1.50163 1.50106 1.43146 1.22450 0.90983 0.90312 0.96916 1.22434 0.98929 1.01537 0.96262 0.93468 0.78102 0.93165 0.91439 0.76392 0.90596 0.89264 0.89104 0.90189 0.76531 0.88000 0.88773 0.89810 0.90990 0.91238 0.91385 0.92176 0.90089 0.91183 0.90417 0.90457 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.99 13.06 55.49 0.72 -24.26 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -5.60 8.69 -15.06 -0.13 -5.73 16 8 H 0.07 1.68 6.78 -52.49 -0.36 1.33 16 9 N -0.71 -14.43 3.69 -47.06 -0.17 -14.61 16 10 C 0.19 3.15 0.41 -131.63 -0.05 3.10 16 11 C 0.12 1.96 4.40 -4.04 -0.02 1.94 16 12 N -0.70 -10.69 4.96 -60.29 -0.30 -10.99 16 13 C 0.51 7.85 7.14 -10.99 -0.08 7.77 16 14 O -0.55 -10.41 15.74 5.56 0.09 -10.32 16 15 C -0.11 -1.21 2.05 -93.00 -0.19 -1.40 16 16 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 17 C -0.12 -1.21 4.39 -27.35 -0.12 -1.33 16 18 C 0.11 0.76 6.47 -3.66 -0.02 0.73 16 19 N -0.72 -6.27 5.27 -59.89 -0.32 -6.59 16 20 C 0.52 5.90 7.07 -11.25 -0.08 5.82 16 21 O -0.56 -8.68 17.92 5.56 0.10 -8.58 16 22 C -0.14 -1.26 5.56 -27.50 -0.15 -1.42 16 23 C -0.10 -1.02 4.87 -27.31 -0.13 -1.16 16 24 C -0.15 -2.16 4.79 -26.59 -0.13 -2.29 16 25 C 0.07 1.00 6.67 37.21 0.25 1.25 16 26 O -0.39 -6.67 10.77 -35.23 -0.38 -7.05 16 27 C 0.07 1.19 6.68 37.21 0.25 1.43 16 28 C -0.15 -2.52 4.75 -26.59 -0.13 -2.65 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.38 8.39 6.90 -40.82 -0.28 8.11 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.32 7.61 -51.93 -0.40 0.93 16 33 H 0.40 5.74 6.31 -40.82 -0.26 5.48 16 34 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.09 0.97 7.74 -51.93 -0.40 0.57 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.50 6.71 -51.93 -0.35 0.15 16 38 H 0.40 3.05 8.91 -40.82 -0.36 2.68 16 39 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 40 H 0.09 0.70 6.79 -51.93 -0.35 0.35 16 41 H 0.08 0.78 6.97 -51.93 -0.36 0.41 16 42 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.89 7.22 -51.93 -0.37 0.51 16 45 H 0.06 1.02 7.20 -51.93 -0.37 0.64 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 1.38 7.75 -51.93 -0.40 0.98 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.08 1.38 7.06 -51.93 -0.37 1.01 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -31.33 384.74 -8.28 -39.61 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -7.97 Total: 15.27 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.83 Total: 5.85 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.06 Total: -56.44 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.19 Total: -25.95 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.33 -8.28 -39.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.015 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds